Metagenome / Metatranscriptome Family F094067

Basic Information
Family ID	F094067
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	44 residues
Representative Sequence	MSDTPPVAGETGDERNNTRLYAGVIVVEVLVLAGIWLFQRYFGS
Number of Associated Samples	49
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.23 %
% of genes near scaffold ends (potentially truncated)	8.49 %
% of genes from short scaffolds (< 2000 bps)	83.02 %
Associated GOLD sequencing projects	41
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (76.415 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (38.679 % of family members)
Environment Ontology (ENVO)	Unclassified (38.679 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (45.283 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54. 1Ga0031656_100167813 2Ga0031656_100489832 3Ga0031656_101527121 4Ga0031653_101771902 5Ga0066602_101673791 6Ga0066599_1013414502 7Ga0062383_100765862 8Ga0062381_103224482 9Ga0074472_111855462 10Ga0079037_1000266922 11Ga0079037_1000440606 12Ga0079037_1001177592 13Ga0079037_1001407042 14Ga0079037_1006694081 15Ga0079037_1007651052 16Ga0079037_1008430252 17Ga0079037_1013300542 18Ga0079037_1014339191 19Ga0079037_1019077822 20Ga0105105_100440063 21Ga0105093_104263862 22Ga0105090_100917022 23Ga0105107_106480182 24Ga0102851_100286085 25Ga0102851_108294252 26Ga0102851_109485952 27Ga0102851_133380692 28Ga0115026_102705832 29Ga0113563_125001192 30Ga0113563_126741172 31Ga0115028_101509552 32Ga0115028_118488291 33Ga0173609_108825372 34Ga0210376_11006892 35Ga0209285_100219642 36Ga0209464_101770172 37Ga0209373_102709712 38Ga0209262_100737302 39Ga0209262_104835141 40Ga0209798_100753912 41Ga0209798_101579822 42Ga0209397_101351452 43Ga0209397_102561162 44Ga0209397_103354241 45Ga0209397_105622922 46Ga0209293_101017742 47Ga0209450_100009039 48Ga0209450_107147812 49Ga0208980_102128042 50Ga0209254_1000282010 51Ga0209254_101847162 52Ga0209254_102315652 53Ga0209254_102340952 54Ga0209254_108996372 55Ga0209668_100190592 56Ga0209668_100552592 57Ga0209253_100167601 58Ga0209253_101960111 59Ga0315290_109019201 60Ga0315278_105212822 61Ga0315292_103043762 62Ga0315292_103512262 63Ga0315283_109018992 64Ga0315276_101057362 65Ga0316604_108540091 66Ga0316605_100236904 67Ga0316605_100370852 68Ga0316605_102485842 69Ga0316605_103072102 70Ga0316605_104838172 71Ga0316605_105697482 72Ga0316605_105889132 73Ga0316605_108159641 74Ga0316605_119424501 75Ga0316603_108004492 76Ga0316603_117891641 77Ga0316603_121083092 78Ga0316603_121110882 79Ga0316619_118067272 80Ga0316622_1000195742 81Ga0316622_1001044554 82Ga0316622_1003674312 83Ga0316622_1004668291 84Ga0316622_1006191632 85Ga0316622_1018171832 86Ga0316622_1021977981 87Ga0316625_1003801392 88Ga0316625_1010080712 89Ga0316601_1000771302 90Ga0316601_1002421372 91Ga0316613_107448321 92Ga0316627_1007729122 93Ga0316627_1013221702 94Ga0316627_1017980642 95Ga0316627_1022537011 96Ga0316629_106463462 97Ga0316629_110817142 98Ga0316621_100446422 99Ga0316621_101510242 100Ga0316621_106478872 101Ga0316621_108034402 102Ga0316616_1018995612 103Ga0316616_1026690391 104Ga0316616_1030442122 105Ga0316617_1005474982 106Ga0373895_005579_1228_1362
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54. 1Ga0031656_100167813 2Ga0066599_1013414502 3Ga0062383_100765862 4Ga0074472_111855462 5Ga0079037_1000266922 6Ga0079037_1001177592 7Ga0079037_1001407042 8Ga0079037_1006694081 9Ga0079037_1008430252 10Ga0079037_1013300542 11Ga0079037_1019077822 12Ga0102851_108294252 13Ga0102851_109485952 14Ga0102851_133380692 15Ga0173609_108825372 16Ga0208980_102128042 17Ga0209668_100190592 18Ga0316622_1003674312 19Ga0316625_1003801392 20Ga0316601_1002421372 21Ga0316627_1017980642 22Ga0316616_1026690391
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44 1Ga0316622_1000195742 2Ga0062383_100765862 3Ga0062381_103224482 4Ga0079037_1000266922 5Ga0079037_1001177592 6Ga0079037_1001407042 7Ga0079037_1006694081 8Ga0079037_1008430252 9Ga0079037_1019077822 10Ga0105093_104263862 11Ga0105107_106480182 12Ga0102851_108294252 13Ga0102851_109485952 14Ga0115026_102705832 15Ga0113563_126741172 16Ga0115028_118488291 17Ga0173609_108825372 18Ga0210376_11006892 19Ga0209397_101351452 20Ga0209397_105622922 21Ga0209450_107147812 22Ga0208980_102128042 23Ga0209254_1000282010 24Ga0209254_102340952 25Ga0209254_108996372 26Ga0209668_100190592 27Ga0209253_100167601 28Ga0315283_109018992 29Ga0316605_100236904 30Ga0316605_100370852 31Ga0316605_103072102 32Ga0316605_105889132 33Ga0316605_119424501 34Ga0316603_121083092 35Ga0316619_118067272 36Ga0316622_1003674312 37Ga0316622_1004668291 38Ga0316622_1018171832 39Ga0316625_1010080712 40Ga0316601_1000771302 41Ga0316627_1013221702 42Ga0316629_110817142 43Ga0316616_1026690391 44Ga0316616_1030442122 45Ga0316617_1005474982
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.83% β-sheet: 0.00% Coil/Unstructured: 54.17%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00474	SSF	42.45
PF14698	ASL_C2	27.36
PF00582	Usp	12.26
PF01402	RHH_1	0.94
PF00206	Lyase_1	0.94
PF02446	Glyco_hydro_77	0.94
PF00326	Peptidase_S9	0.94
PF02129	Peptidase_S15	0.94
PF13358	DDE_3	0.94
PF00155	Aminotran_1_2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1640	4-alpha-glucanotransferase	Carbohydrate transport and metabolism [G]	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.42 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.42 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.42 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	41.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Unclassified	root	N/A	23.58 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	5.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.58 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.94 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	5.66 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium ADurb.BinA305	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.BinA305	0.94 %
Unclassified	root	N/A	23.58 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	5.66 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium ADurb.BinA305	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.BinA305	0.94 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	5.66 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium ADurb.BinA305	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.BinA305	0.94 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	4.72 %
Unclassified	root	N/A	23.58 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium ADurb.BinA305	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.BinA305	0.94 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	4.72 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.94 %
Unclassified	root	N/A	23.58 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003858\|Ga0031656_10016781	All Organisms → cellular organisms → Bacteria	3067	Open in IMG/M
3300003858\|Ga0031656_10048983	All Organisms → cellular organisms → Bacteria → Acidobacteria	1682	Open in IMG/M
3300003858\|Ga0031656_10152712	Not Available	808	Open in IMG/M
3300003859\|Ga0031653_10177190	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300004151\|Ga0066602_10167379	All Organisms → cellular organisms → Bacteria → Acidobacteria	944	Open in IMG/M
3300004282\|Ga0066599_101341450	Not Available	542	Open in IMG/M
3300004778\|Ga0062383_10076586	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300004808\|Ga0062381_10322448	Not Available	574	Open in IMG/M
3300005833\|Ga0074472_11185546	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300006224\|Ga0079037_100026692	All Organisms → cellular organisms → Bacteria	4194	Open in IMG/M

Showing 1 to 10 of 106 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	1.89%
Environmental	Environmental	98.11%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	59.43%
Bioremediation	Engineered → Bioremediation	0.94%
Terrestrial	Environmental → Terrestrial	38.68%
Wastewater	Engineered → Wastewater	0.94%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	56.60%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.94%
Marine	Environmental → Aquatic → Marine	1.89%
Metal	Engineered → Bioremediation → Metal	0.94%
Sediment	Environmental → Aquatic → Sediment	0.94%
Soil	Environmental → Terrestrial → Soil	38.68%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.94%
Lake	Environmental → Aquatic → Freshwater → Lake	5.66%
Lentic	Environmental → Aquatic → Freshwater → Lentic	14.15%
Mine Water	Engineered → Wastewater → Industrial Wastewater → Mine Water	0.94%
Pond	Environmental → Aquatic → Freshwater → Pond	4.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	12.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	38.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.81%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.94%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.94%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	14.15%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	5.66%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	4.72%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	38.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	19.81%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	12.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified	0.94%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.94%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	4.72%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	14.15%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.72%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	15.09%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	5.66%
Sediment	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment	0.94%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.94%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	38.68%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	7.55%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.94%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	4.72%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300003859	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR	Environmental	Open in IMG/M
3300004151	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M

Showing 1 to 10 of 49 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0031656_100167813	3300003858	Freshwater Lake Sediment	MSDTPPVAGEPVAERNNTRLYAGVIVVQVIVVAGIWFFQRYFGS*
Ga0031656_100489832	3300003858	Freshwater Lake Sediment	MSDTPLVAGEPVAERNNTRLYAGVIVVEVIVVAGIWFFQRYFGT*
Ga0031656_101527121	3300003858	Freshwater Lake Sediment	MSDTPLVAGEPVAERNNTLMYAGVLVVEVIVVAGIWFFQRYFGS*
Ga0031653_101771902	3300003859	Freshwater Lake Sediment	MSDTPPVAGEPVAERNNTRLYAGVIVVEVIVVAGIWLFQRYFGS*
Ga0066602_101673791	3300004151	Freshwater	MSDTPPVAGEPVAERNNTRLYAGVIVVEVIVVAGIWLFQRYFGT*
Ga0066599_1013414502	3300004282	Freshwater	MSETRVTASDAVEDRDNTRLYAGVILVEVIVVVGIWLIQRYFGS*
Ga0062383_100765862	3300004778	Wetland Sediment	VSGTSSSAGGITNERRNIRLYAGVLVVEVIVLVAIWLIQRYFGA*
Ga0062381_103224482	3300004808	Wetland Sediment	MSDAPFVAGEPVAERNNTRLYVGVIVVEVIVVLGIYLFQRYFGT*
Ga0074472_111855462	3300005833	Sediment (Intertidal)	MSDTPLVAGGTGEERSNTRLYAGVIVVEIIVVTAIWLFQ
Ga0079037_1000266922	3300006224	Freshwater Wetlands	MTDTLLQAGGAADEQAHTRRYVGVIVVEVLAVIGIWLVQRYFGS*
Ga0079037_1000440606	3300006224	Freshwater Wetlands	MSDTPPVAGETGDERDNTRLYAGVIAVEVLVLAGIWLFQRYFGA*
Ga0079037_1001177592	3300006224	Freshwater Wetlands	MSETSQIPAGTGDERDNTRLYAGVIAVEVVVLVAIWLFQRYFGS*
Ga0079037_1001407042	3300006224	Freshwater Wetlands	MSDTLPPAGDAADERDNTRRYVGVIVVEVVVLAGIWLFQRYFGS*
Ga0079037_1006694081	3300006224	Freshwater Wetlands	MSPTQRGGGEAIGERDNTRLYAGVIVTEVIVLVAMWLFQRYFGA*
Ga0079037_1007651052	3300006224	Freshwater Wetlands	MSDTPPVASETGDERNNTRLYAGVIVVEVLVLAGIWLFQRYFGA*
Ga0079037_1008430252	3300006224	Freshwater Wetlands	VTDMRLQAAEHPEERNNTRLYAGVILVEVVVLAGIWFFQRYFGP*
Ga0079037_1013300542	3300006224	Freshwater Wetlands	VKDAPVITGEPRAERDNARLYAGVIVIEVIVVVAIWLFQRYFGS*
Ga0079037_1014339191	3300006224	Freshwater Wetlands	MSDTPPVAGETGDERSNTRLYAGVIVVEVLVLAGIWLFQRYFGS*
Ga0079037_1019077822	3300006224	Freshwater Wetlands	MNSTPLAAGETGVERDNTRVYAGVIMIEVLVLAGIWLFQRYFGS*
Ga0105105_100440063	3300009009	Freshwater Sediment	MSETRVTAGDAGEERDNTILYAGVIVVEVIVVVGIWLFQRYFGS*
Ga0105093_104263862	3300009037	Freshwater Sediment	MSETRVTAGGTGDERDNTRLYAGVIVVEVIIVVGIWLFQRYFGS*
Ga0105090_100917022	3300009075	Freshwater Sediment	MSETRVTAGEAGDERDNTRLYAGVIVVEVIVVVGIWLFQRYFGS*
Ga0105107_106480182	3300009087	Freshwater Sediment	MSETRVPAGDAGEERDNTRLYAGVIVVEMIVVFGIWMFQQYFGS*
Ga0102851_100286085	3300009091	Freshwater Wetlands	MSDTPPVAGETGDERDNTRLYASVIAVEVLVLAGIWLFQRYFGA*
Ga0102851_108294252	3300009091	Freshwater Wetlands	MSDTSPAAGETRDERNNTRVYAGVIALEVVVVVAIWLFQRYFGT*
Ga0102851_109485952	3300009091	Freshwater Wetlands	MSGTSPGAGETTDDRRNVRLYAGVIVVEVVVLIAIWLFQRYFGS*
Ga0102851_133380692	3300009091	Freshwater Wetlands	MSETDVTAGGTVPERDNTRLYAGVLVVEALVLSAIWLFQRYFGS*
Ga0115026_102705832	3300009111	Wetland	MTGMSPSADETTNDRRNVRLYAGVLVVEVLVLSAIWLFQRYFGS*
Ga0113563_125001192	3300009167	Freshwater Wetlands	MSDTLPPAGDAADERDNTRRYVGVIVVEVVVLTGIWLFQRYFGS*
Ga0113563_126741172	3300009167	Freshwater Wetlands	MSDTQQSAGEAMEDRDNTRLYAGVIVVEVVVLVAIWLFQRYFGS*
Ga0115028_101509552	3300009179	Wetland	MSGTSPGAGETTNDRRNVRLYAGVLVVEVLVLSAIWLFQRYFGS*
Ga0115028_118488291	3300009179	Wetland	MSETALTTSGRAGDEQDNTRLYVGVIVVEVLVLAGIWLFQRYFGS*
Ga0173609_108825372	3300013315	Sediment	MSDTRATGGGTRDERDSTRLYAGVIVVECVVLVAIWLFQRYFGSSS*
Ga0210376_11006892	3300022385	Estuarine	MTETPLNAGETTDQRHNVRLYAGVLVVEAVVLAAIWLFQRYFGA
Ga0209285_100219642	3300027726	Freshwater Sediment	MSETRVTAGDAGEERDNTILYAGVIVVEVIVVVGIWLFQRYFGS
Ga0209464_101770172	3300027778	Wetland Sediment	MSDAPFVAGEPVAERNNTRLYVGVIVVEVIVVLGIYLFQRYFGT
Ga0209373_102709712	3300027796	Freshwater	MSDTPPVAGEPVAERNNTRLYAGVIVVEVIVVAGIWLFQRYFGT
Ga0209262_100737302	3300027841	Freshwater	MSETRVTAGDAGEERDNTRLYAGVIVVEVIVVVGIWLFQRYFGS
Ga0209262_104835141	3300027841	Freshwater	SQERRPMSDTPPVAGEPVAERNNTRLYAGVIVVEVIVVAGIWFFQRYFGT
Ga0209798_100753912	3300027843	Wetland Sediment	MSDTPLVAGENGDERSNTRLYAGVIVVEVIVVTAIWLFQRYFGT
Ga0209798_101579822	3300027843	Wetland Sediment	VSGTSSSAGGITNERRNIRLYAGVLVVEVIVLVAIWLIQRYFGA
Ga0209397_101351452	3300027871	Wetland	MSETDVTAGGTVPERDNTRLYAGVLVVEALVLSAIWLFQRYFGS
Ga0209397_102561162	3300027871	Wetland	MSDTPPVAGETGDERDNTRLYASVIAVEVLVLAGIWLFQRYFGA
Ga0209397_103354241	3300027871	Wetland	MTDTLLQAGGAADEQAHTRRYVGVIVVEVLAVIGIWLVQRYFGS
Ga0209397_105622922	3300027871	Wetland	MSDTRVTAGDTGAERDNTRLYAGVIAVEAVVLVAIWLFQRYFGS
Ga0209293_101017742	3300027877	Wetland	MSDTPPVASETGDERNNTRLYAGVIVVEVLVLAGIWLFQRYFGA
Ga0209450_100009039	3300027885	Freshwater Lake Sediment	MSETRATAGGAGEERDNTRLYAGVIVVEVIVVVGIWLFQRYFGS
Ga0209450_107147812	3300027885	Freshwater Lake Sediment	MSDTRAAAGGTREERDNTRLYAGVIVVEVVVLVAIWLFQRYFGA
Ga0208980_102128042	3300027887	Wetland	MTGTSPAAGESGKAPDHVRLYAGVIVVEVIVLACIWMIQRYFGS
Ga0209254_1000282010	3300027897	Freshwater Lake Sediment	MSETRVTASDAVEERDNTRLYAGVILVEVIVVVGIWLIQRYFGS
Ga0209254_101847162	3300027897	Freshwater Lake Sediment	MSDTPLVAGEPVAERNNTLMYAGVLVVEVIVVAGIWFFQRYFGS
Ga0209254_102315652	3300027897	Freshwater Lake Sediment	MSDTPPVAGEPVAERNNTRLYAGVIVVQVIVVAGIWFFQRYFGS
Ga0209254_102340952	3300027897	Freshwater Lake Sediment	MSDTPLVAGEPVAERNNTRLYAGVIVVEVIVVAGIWFFQRYFGT
Ga0209254_108996372	3300027897	Freshwater Lake Sediment	MSETRVTATEAGEERDNTRLYAGVIVVQVIVVVGIWLFQRYFGS
Ga0209668_100190592	3300027899	Freshwater Lake Sediment	MSDIPLTAGEAANERDNTRLYAGVIVVEVIVLAAIWIFQRYFGL
Ga0209668_100552592	3300027899	Freshwater Lake Sediment	MSDTPPVAGEPVAERNNTRLYAGVIVVEVIVVAGIWLFQRYFGS
Ga0209253_100167601	3300027900	Freshwater Lake Sediment	MSDTPLVAGGTGDERSNTRLYAGVIVVEVIVVTAIWLFQRYFGT
Ga0209253_101960111	3300027900	Freshwater Lake Sediment	MSDTPPVAGEPVAERNNTRLYAGVIVVEVIVVAGIWLFQRYFG
Ga0315290_109019201	3300031834	Sediment	QERRPMSDTPLVAGEPVAERNNTRMYAGVIVVEVIVVAGIWLFQRYFGS
Ga0315278_105212822	3300031997	Sediment	MSDTPLVAGEPVAERNNTRMYAGVIVVEVIVVAGIWFFQRYFGS
Ga0315292_103043762	3300032143	Sediment	MSDTPIVAGEPVAERNNTRLYAGVIVVEVIVVAGIWFFQRYFGS
Ga0315292_103512262	3300032143	Sediment	MSDTPLVAGEPVAERNNTRMYAGVIVVEVIVVAGIWFFQRYFGT
Ga0315283_109018992	3300032164	Sediment	MSELPLVAGEPVAERNNTLMYAGVLVVEVIVVAGIWFFQRYFGS
Ga0315276_101057362	3300032177	Sediment	MSDTPIVAGEPVAERNNTRLYAGVIVVEVIVVAGIWFFQRYFGT
Ga0316604_108540091	3300033406	Soil	MSGTSPGAGETTNDRRNVRLYAGVIVVEVVVLIAIWLFQRYFGS
Ga0316605_100236904	3300033408	Soil	VSGTSPHAGGTADERYNARWYVGVIVVEVLVLAGIWLVQRYFGS
Ga0316605_100370852	3300033408	Soil	VSGTPSSAGSATNERRNVRLYAGVIVVEVVVLVAIWLFQRYFGT
Ga0316605_102485842	3300033408	Soil	MTGMSPSADETTNDRRNVRLYAGVLVVEVLVLSAIWLFQRYFGS
Ga0316605_103072102	3300033408	Soil	MSETQRSAGETVTERDNTRLYAGAIVVEAVVLAAIWLFQRYFGS
Ga0316605_104838172	3300033408	Soil	MSETAPTTSGRAGDEQDNTRLYVGVIVVEVLVLAGIWLFQRYFGS
Ga0316605_105697482	3300033408	Soil	MSETSQIPAGTGDERDNTRLYAGVIAVEVVVLVAIWLFQRYFGS
Ga0316605_105889132	3300033408	Soil	VSGTSPSDGETTNDRRNVRLYAGVLVVEVLVLSAIWLFQRYFGA
Ga0316605_108159641	3300033408	Soil	MSETSQIPAGTGDERDNTRLYAGVIAVEVVVLTAIWLFQRYFGS
Ga0316605_119424501	3300033408	Soil	MSDTRVTAGVTGEERNNTRLYAGVIVVEVVVLVAIWLFQRYFGS
Ga0316603_108004492	3300033413	Soil	MSDTPPVAGETGDERDNTRLYAGVIAVEVLVLAGIWLFQRYFGA
Ga0316603_117891641	3300033413	Soil	VKDAPVITGEPRAERDNARLYAGVIVIEVIVVVAIW
Ga0316603_121083092	3300033413	Soil	MNETSPSAGETGNERRNVRLYAGVLAVEALVLSAIWLFQRYFGS
Ga0316603_121110882	3300033413	Soil	MSETSPSAGETGNERRNVRLYAGVIAVEALVLSAIWLFQRYFGS
Ga0316619_118067272	3300033414	Soil	VKDAPVITGEPRAERDNTRLYAGVIVIEVIVVVAIWLFQRYFGS
Ga0316622_1000195742	3300033416	Soil	MSDTPPVAGETGDERNNTRLYAGVIVVEVLVLAGIWLFQRYFGS
Ga0316622_1001044554	3300033416	Soil	MSDTLPPAGDAADERDNTRRYVGVIVVEVVVLAGIWLFQRYFGS
Ga0316622_1003674312	3300033416	Soil	MSETPLQAGGALDERNNTRMYLGVIVVEVLVLVAIWWFQRHFGS
Ga0316622_1004668291	3300033416	Soil	MSETLLHAGGAADERDNTRRYVGVIVVEVVVLVGIWLFQRYFGS
Ga0316622_1006191632	3300033416	Soil	VKDAPVITGEPRAERDNARLYAGVIVIEVIVVVAIWLFQRYFGS
Ga0316622_1018171832	3300033416	Soil	MTDTSPPAGGTASELAHTRRYVGVIVVEVLVLIGIWLVQRYFGS
Ga0316622_1021977981	3300033416	Soil	VTDIRLKAAEHPEERNNTRLYAGVILVEVVVLAGIWFFQRYFGP
Ga0316625_1003801392	3300033418	Soil	MNETPRRAGEAAAERDNARLYAGVVAAEVVVLVAIWIFQRYFGA
Ga0316625_1010080712	3300033418	Soil	MNDTPLLGGEPVAERNNTRMYAGVIVVEVIVVAGIWLFQRYFGT
Ga0316601_1000771302	3300033419	Soil	MSVAQRSGGEAVTDRDNTRLYAGVIVVEAVVLVAIWLFQRYFGS
Ga0316601_1002421372	3300033419	Soil	AAAKERGTVSGTSPHAGGTADERYNARWYVGVIVVEVLVLAGIWLVQRYFGS
Ga0316613_107448321	3300033434	Soil	MSKTSQSPAGTGDERDNTRLYAGVIAVEVVVLTAIWLFQRYFGS
Ga0316627_1007729122	3300033482	Soil	MNETSPSAGETGNERRNVRLYAGVLVVEALVLSAIWLFQRYFGS
Ga0316627_1013221702	3300033482	Soil	MSETAPSAGGTENERRNVRLYGGVIVVEVVVLVAIWLFQRYFGS
Ga0316627_1017980642	3300033482	Soil	MSETALTTSGRAGDEQDNTRLYVGVIVVEVLVLAGIWLVQRYFGS
Ga0316627_1022537011	3300033482	Soil	VKDAPVITGEPRAERDNTRLYAGVIVIEVIVVVAIW
Ga0316629_106463462	3300033483	Soil	MSGTSPGAGETTNDRRNVRLYAGVLVVEVLVLSAIWLFQRYFGS
Ga0316629_110817142	3300033483	Soil	MSETGVTTGGTVPERNNTRLYAGVIVVEVVVLVAIWLLQRYFGS
Ga0316621_100446422	3300033488	Soil	MSDTLPPAGDAADERDNTRRYVGVIVVEVVVLVGIWLFQRYFGS
Ga0316621_101510242	3300033488	Soil	PMSDTPPVAGETGDERDNTRLYASVIAVEVLVLAGIWLFQRYFGA
Ga0316621_106478872	3300033488	Soil	MSDTSPAAGETRDERNNTRVYAGVIALEVVVVVAIWLFQRYF
Ga0316621_108034402	3300033488	Soil	MNETPRRAGEAVAERDNTRLYAGVVAAEVVVLVAIWLFQRYFGA
Ga0316616_1018995612	3300033521	Soil	MSDTLPPAGDAADERDNTRRYIGVIVVEVVVLAGIWLFQRYFGS
Ga0316616_1026690391	3300033521	Soil	VTPEPVPAGEPAADRDNTRLYVGVIVLEILVLAGIWLFQRYFGS
Ga0316616_1030442122	3300033521	Soil	MSEPQRGAGEAIAERDNSRLYAGVIAVEVVVLVAIWLFQRYFGA
Ga0316617_1005474982	3300033557	Soil	MNETPRRAGEAAAVRDNARLYAGVVAAEVVVLVAIWLFQRYFGA
Ga0373895_005579_1228_1362	3300034075	Sediment Slurry	MSDTPLVAGEPVADRNNTRMYAGVIVVEVIVVAGIWLFQRYFGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094067

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences