Metagenome Family F094066

Basic Information
Family ID	F094066
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	58 residues
Representative Sequence	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPAEGGEPHLHDHEREFKL
Number of Associated Samples	81
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.51 %
% of genes near scaffold ends (potentially truncated)	8.49 %
% of genes from short scaffolds (< 2000 bps)	67.92 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (92.453 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (16.981 % of family members)
Environment Ontology (ENVO)	Unclassified (23.585 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (38.679 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1Ga0031655_102790951 2Ga0055435_100937832 3Ga0055438_100718511 4Ga0055451_103017482 5Ga0055459_100474282 6Ga0071116_100154816 7Ga0068993_103431101 8Ga0068997_101133121 9Ga0068995_101366431 10Ga0066388_1001358651 11Ga0066388_1015154341 12Ga0066388_1077623361 13Ga0070731_103193782 14Ga0068860_1027218371 15Ga0075023_1005805012 16Ga0079037_1000451763 17Ga0079037_1003795182 18Ga0079037_1008379172 19Ga0079037_1012551111 20Ga0079037_1020615281 21Ga0073934_100440103 22Ga0099828_116236901 23Ga0102851_105947043 24Ga0102851_106230452 25Ga0113563_101257213 26Ga0113563_110905112 27Ga0118657_100001539 28Ga0118657_102995272 29Ga0126374_101103473 30Ga0136449_1001852803 31Ga0136449_1008971652 32Ga0136847_122330581 33Ga0136847_127767352 34Ga0134122_109740382 35Ga0134121_100185912 36Ga0137716_100049615 37Ga0137716_100636343 38Ga0137363_115639532 39Ga0137359_109226522 40Ga0153915_101831992 41Ga0153915_121054402 42Ga0167652_10001753 43Ga0187824_100396023 44Ga0187825_101506101 45Ga0187821_103278771 46Ga0187775_105267462 47Ga0187779_111337252 48Ga0187780_102666262 49Ga0187884_100009624 50Ga0187766_106236152 51Ga0187892_1000278412 52Ga0196976_10087953 53Ga0209172_100651812 54Ga0210132_10348082 55Ga0210094_10782171 56Ga0210075_10674902 57Ga0209117_10064053 58Ga0209726_103525372 59Ga0209514_101510432 60Ga0209579_103329212 61Ga0209397_104709232 62Ga0209293_103655212 63Ga0209253_108126731 64Ga0209048_100094889 65Ga0209415_100054135 66Ga0209583_106468572 67Ga0233417_105840742 68Ga0268264_119450191 69Ga0265330_100167314 70Ga0265330_100616863 71Ga0265329_101289982 72Ga0307440_12132431 73Ga0307424_12822531 74Ga0247727_105844012 75Ga0315535_10407892 76Ga0214473_100016069 77Ga0214473_114396492 78Ga0311301_110141671 79Ga0315281_100382365 80Ga0315268_100786422 81Ga0315268_102812982 82Ga0315268_103435862 83Ga0315268_110165452 84Ga0315271_112239922 85Ga0315286_101185062 86Ga0315286_103306852 87Ga0335085_108113312 88Ga0335085_108836162 89Ga0335085_116717151 90Ga0335082_1000358113 91Ga0335070_100495035 92Ga0335070_100546366 93Ga0335070_100775282 94Ga0335070_115584852 95Ga0335081_115340341 96Ga0335069_1000821115 97Ga0335069_100554547 98Ga0335084_104081303 99Ga0326728_100407024 100Ga0214472_106438462 101Ga0316605_119099971 102Ga0316619_118799272 103Ga0316622_1023031732 104Ga0316620_102530053 105Ga0316621_109894201 106Ga0316616_1000656963
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1Ga0031655_102790951 2Ga0066388_1001358651 3Ga0079037_1000451763 4Ga0113563_101257213 5Ga0137716_100049615 6Ga0137359_109226522 7Ga0187779_111337252 8Ga0196976_10087953 9Ga0307424_12822531
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1Ga0335070_100775282 2Ga0055438_100718511 3Ga0079037_1008379172 4Ga0113563_101257213 5Ga0118657_100001539 6Ga0126374_101103473 7Ga0136847_127767352 8Ga0134121_100185912 9Ga0137716_100049615 10Ga0137363_115639532 11Ga0137359_109226522 12Ga0187824_100396023 13Ga0196976_10087953 14Ga0209172_100651812 15Ga0210132_10348082 16Ga0209726_103525372 17Ga0209397_104709232 18Ga0209048_100094889 19Ga0307424_12822531 20Ga0214473_100016069 21Ga0214473_114396492 22Ga0315281_100382365 23Ga0315271_112239922 24Ga0335082_1000358113 25Ga0335081_115340341 26Ga0214472_106438462 27Ga0316605_119099971 28Ga0316620_102530053 29Ga0316621_109894201
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.08% β-sheet: 0.00% Coil/Unstructured: 60.92%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13193	AMP-binding_C	4.72
PF03706	LPG_synthase_TM	3.77
PF02954	HTH_8	2.83
PF13229	Beta_helix	2.83
PF00679	EFG_C	2.83
PF03144	GTP_EFTU_D2	2.83
PF01336	tRNA_anti-codon	1.89
PF00871	Acetate_kinase	1.89
PF12802	MarR_2	1.89
PF14234	DUF4336	1.89

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	3.77
COG0282	Acetate kinase	Energy production and conversion [C]	1.89
COG3426	Butyrate kinase	Energy production and conversion [C]	1.89
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG1838	Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain	Energy production and conversion [C]	0.94
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.94
COG2060	K+-transporting ATPase, KdpA subunit	Inorganic ion transport and metabolism [P]	0.94
COG2124	Cytochrome P450	Defense mechanisms [V]	0.94
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.94
COG2205	K+-sensing histidine kinase KdpD	Signal transduction mechanisms [T]	0.94

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.45 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.45 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.45 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	7.55 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	60.38 %

Name	Rank	Taxonomy	Distribution
bacterium HR30	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	60.38 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Unclassified	root	N/A	7.55 %

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300028043\|Ga0233417_10584074	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	530	Open in IMG/M
3300003852\|Ga0031655_10279095	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	625	Open in IMG/M
3300003994\|Ga0055435_10093783	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	785	Open in IMG/M
3300003995\|Ga0055438_10071851	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	935	Open in IMG/M
3300004004\|Ga0055451_10301748	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	659	Open in IMG/M
3300004027\|Ga0055459_10047428	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	1018	Open in IMG/M
3300005077\|Ga0071116_1001548	All Organisms → cellular organisms → Bacteria → Proteobacteria	34266	Open in IMG/M
3300005183\|Ga0068993_10343110	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	545	Open in IMG/M
3300005204\|Ga0068997_10113312	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	596	Open in IMG/M
3300005206\|Ga0068995_10136643	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	525	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.28%
Host-Associated	Host-Associated	4.72%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	51.89%
Plants	Host-Associated → Plants	4.72%
Terrestrial	Environmental → Terrestrial	43.40%

Habitat	Taxonomy	Distribution
Cave	Environmental → Terrestrial → Cave	1.89%
Freshwater	Environmental → Aquatic → Freshwater	32.08%
Marine	Environmental → Aquatic → Marine	14.15%
Peat	Environmental → Terrestrial → Peat	0.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.83%
Sediment	Environmental → Aquatic → Sediment	1.89%
Soil	Environmental → Terrestrial → Soil	40.57%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.77%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.89%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.83%
Lake	Environmental → Aquatic → Freshwater → Lake	10.38%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.83%
Loam	Environmental → Terrestrial → Soil → Loam	3.77%
Sand	Environmental → Terrestrial → Soil → Sand	0.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.89%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	15.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	20.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.15%
Wetlands	Environmental → Aquatic → Marine → Wetlands	11.32%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	1.89%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.77%
Neutral	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral	1.89%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.83%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	10.38%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.83%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	20.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.26%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	10.38%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	9.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.94%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.83%

Habitat	Taxonomy	Distribution
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.94%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.94%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	1.89%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	8.49%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.89%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	1.89%
Hot Spring Fe-Si Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Fe-Si Sediment	1.89%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.89%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	1.89%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	9.43%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.83%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.89%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	8.49%
Sinkhole	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	16.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.89%

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004004	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D2	Environmental	Open in IMG/M
3300004027	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLC_D2	Environmental	Open in IMG/M
3300005077	Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005204	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2	Environmental	Open in IMG/M
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0031655_102790951	3300003852	Freshwater Lake Sediment	MTTDEKLKLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPAELGEPHLHDHEREFKL*
Ga0055435_100937832	3300003994	Natural And Restored Wetlands	MTTDEKLKLAVSVARAAARSGEYRRLEKLIEVVFRKLNELAPSDSGEMHLQEHDRDFKL*
Ga0055438_100718511	3300003995	Natural And Restored Wetlands	MTTDEKLKLAVSVARAAAHSGEYRRLDKLIETVFRKLNELAPPESSEGPLHDHDREFKL*
Ga0055451_103017482	3300004004	Natural And Restored Wetlands	MTTDEKLRLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPAGGEGGPHDGEPEHEKEFKL*
Ga0055459_100474282	3300004027	Natural And Restored Wetlands	MTTDEKLKLAVSVARAAAQSGEYRRLDKLIEVVFRKLNELSPPELGEPHVHDHDREFKL*
Ga0071116_100154816	3300005077	Sinkhole	MTTDEKLKLAVSVARAAARSGEYRRLDTLIEVVFRKLNELAPPEAEPHDHDREFKL*
Ga0068993_103431101	3300005183	Natural And Restored Wetlands	EQRMTTDEKLKLAVSVARAAAQSGEYRRLDKLIELVFRKLNELSPPELAEPHVHDHDREFKL*
Ga0068997_101133121	3300005204	Natural And Restored Wetlands	MTTDEKLKLAVSVARAAARSGEYRRLEKLIEVVFRKLNELAPSDSSEIHLQDHDRDFKL*
Ga0068995_101366431	3300005206	Natural And Restored Wetlands	MTTDEKLKLAVSVARAAARSGEYRRLEKLIEVVFRKLNELAPSDSGDMHLQEHDRDFKL*
Ga0066388_1001358651	3300005332	Tropical Forest Soil	AVSVARAAARSGEYRRLDKLIEIVFRKLNELAPVELGEAHEHDRDFKL*
Ga0066388_1015154341	3300005332	Tropical Forest Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPVELGEAHEHERDFKL*
Ga0066388_1077623361	3300005332	Tropical Forest Soil	MTRDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPGDSADPHQQEHEREFKL*
Ga0070731_103193782	3300005538	Surface Soil	MTTDEKLKLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPSDTAEAHEHDREFKL*
Ga0068860_1027218371	3300005843	Switchgrass Rhizosphere	MTTDEKLKLAVSVARAAAQSGEYRRLDKLIEVVFRKLNELSPPELPESHVHDHDREFKL*
Ga0075023_1005805012	3300006041	Watersheds	MTTDEKLKLAVSVARAAARSGEYRRLEKLIEVVFRKLNELAPSESGEMHLQDHDRDFKL*
Ga0079037_1000451763	3300006224	Freshwater Wetlands	MAQEGCMTSDEKLKLAVSVARAAARSGEYRRLDTLIEMVFRKLNELAPPEPTELHEPEREFKL*
Ga0079037_1003795182	3300006224	Freshwater Wetlands	MTRDDKLKLAVSVARAAAASGEYRQLDKLIEIVFRKLNELAPAEGGEPHLHDHDREFKL*
Ga0079037_1008379172	3300006224	Freshwater Wetlands	KLAVSVARAAARSGEYRRLDTLIEVVFRKLNELAPSEPEIHDHERDFKL*
Ga0079037_1012551111	3300006224	Freshwater Wetlands	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELVPSEGAEPHIHDREF
Ga0079037_1020615281	3300006224	Freshwater Wetlands	MTTDEKLKLAVSVARAAARSGEYRQLDKLIEIVFRKLNELIPPESGEPHLHEHDREFKL*
Ga0073934_100440103	3300006865	Hot Spring Sediment	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELVPPDGGEAQLHEHDREFKL*
Ga0099828_116236901	3300009089	Vadose Zone Soil	MTTDDKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPPESAEPHVQEREFKL*
Ga0102851_105947043	3300009091	Freshwater Wetlands	MTSDEKLKLAVSVARAAARSGEYRRLDTLIEMVFRKLNELAPPEPTELHEPEREFKL*
Ga0102851_106230452	3300009091	Freshwater Wetlands	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELVPSEGAEPHIHDREFKL*
Ga0113563_101257213	3300009167	Freshwater Wetlands	MTTDDKLKLAVSVACAAAHSGEHRRLDTLIELVFRKLNELDPPEHSALHEADREFNL*
Ga0113563_110905112	3300009167	Freshwater Wetlands	MMTTDEKLKLAVSVARAAARSGEYRQLDKLIEIVFRKLNELIPPESGEPHLHEHDREFKL
Ga0118657_100001539	3300009506	Mangrove Sediment	MMTRDDKLKLAVSVARAAAGSGEYRQLDKLIEVVFRKLNELAPAEGGEPHLHDHDREFRL
Ga0118657_102995272	3300009506	Mangrove Sediment	MTTDEKLRLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPAGGESGPHDGEPEHEKEFKL*
Ga0126374_101103473	3300009792	Tropical Forest Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPVELGEAHEHDRDFKL*
Ga0136449_1001852803	3300010379	Peatlands Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPPEAGELHLQEHDREFKL*
Ga0136449_1008971652	3300010379	Peatlands Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELVPPEVESQLHEHEREFKL*
Ga0136847_122330581	3300010391	Freshwater Sediment	MTTDEKLKLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPPESSEGPLHDHDREFKL*
Ga0136847_127767352	3300010391	Freshwater Sediment	MTADEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPPDSAEIHLQEHEREFKL*
Ga0134122_109740382	3300010400	Terrestrial Soil	MTTDEKLKLAVSVARAAAQSGEYRRLDKLIEMVFRKLNELSPPEMAEPHVHDHDREFKL*
Ga0134121_100185912	3300010401	Terrestrial Soil	MTTDEKLKLAVSVARAAAHSGEYRRLDKLIEIVFRKLNQLAPSDSTETHEHDRDFKL*
Ga0137716_100049615	3300010938	Hot Spring Fe-Si Sediment	MGRRREAMTADEKLRLAVSVARAAAHSGEYRRLDKLIEIVYRKLNELAPPHTETTSEPERDFRL*
Ga0137716_100636343	3300010938	Hot Spring Fe-Si Sediment	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPADGEPHLRDQEREFKL*
Ga0137363_115639532	3300012202	Vadose Zone Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPPEAAAPHLHDGDHEFKL*
Ga0137359_109226522	3300012923	Vadose Zone Soil	MTTDEKLRLAVGVARAAAHSGEYRRLDKLIEIVFRKLNELNPIHHDGPEADREFRL*
Ga0153915_101831992	3300012931	Freshwater Wetlands	MTTDEKLRLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPSGGESGPHDGEPEHEKEFKL*
Ga0153915_121054402	3300012931	Freshwater Wetlands	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPAEGEPQLHEHEREFKL*
Ga0167652_10001753	3300015164	Glacier Forefield Soil	MTTDDKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPSDGPEPHLHDREFKL*
Ga0187824_100396023	3300017927	Freshwater Sediment	MTSDEKLRLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPTDRGDLPLHDHDHDRDFK
Ga0187825_101506101	3300017930	Freshwater Sediment	MTSDDKLKLAVSVARAAARSGEYRRLVKLIEIVFRKLNELAPTDRGDLPLHDHDHDRDFK
Ga0187821_103278771	3300017936	Freshwater Sediment	MTSDDKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELSPPEGGEPHLHEHDREFKL
Ga0187775_105267462	3300017939	Tropical Peatland	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPSDGGEPHDREFKL
Ga0187779_111337252	3300017959	Tropical Peatland	MTSDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPSESGDIHLQE
Ga0187780_102666262	3300017973	Tropical Peatland	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELVPPDAEAPLHDHEREFKL
Ga0187884_100009624	3300018009	Peatland	MTTDEKLKLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPAELGEPHLHDHEREFKL
Ga0187766_106236152	3300018058	Tropical Peatland	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPEGSEAHDRDRDFKL
Ga0187892_1000278412	3300019458	Bio-Ooze	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPSDEVHDREFKL
Ga0196976_10087953	3300020147	Soil	MTRDEKLRLAVSVARAAAHSGEYRRLDKLIDIVFRKLEQLSPEDDPRQQERDFKF
Ga0209172_100651812	3300025310	Hot Spring Sediment	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELVPPDGGEAQLHEHDREFKL
Ga0210132_10348082	3300025538	Natural And Restored Wetlands	MTTDEKLKLAVSVARAAAQSGEYRRLDKLIELVFRKLNELSPPELAEPHVHDHDREFKL
Ga0210094_10782171	3300025549	Natural And Restored Wetlands	MTTDEKLKLAVSVARAAAHSGEYRRLDKLIETVFRKLNELAPPESSEGPLHDHDREFKL
Ga0210075_10674902	3300025790	Natural And Restored Wetlands	MTTDEKLKLAVSVARAAAQSGEYRRLDKLIEVVFRKLNELSPPELGEPHVHDHDREFKL
Ga0209117_10064053	3300027645	Forest Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPSESTEPHLHDRDFKL
Ga0209726_103525372	3300027815	Groundwater	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEVIFRKLNELAPSDAGEPHLHEHEREFKL
Ga0209514_101510432	3300027819	Groundwater	MTTDEKLRLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPADLEGHDADRDFKM
Ga0209579_103329212	3300027869	Surface Soil	MTTDEKLKLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPSDTAEAHEHDREFKL
Ga0209397_104709232	3300027871	Wetland	MAQEGCMTSDEKLKLAVSVARAAARSGEYRRLDTLIEMVFRKLNELAPPEPTELHEPEREFKL
Ga0209293_103655212	3300027877	Wetland	MTRDDKLKLAVSVARAAAASGEYRQLDKLIEIVFRKLNELAPAEGGEPHLHDHDREFKL
Ga0209253_108126731	3300027900	Freshwater Lake Sediment	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELVPSEGAEPHIHDREFKL
Ga0209048_100094889	3300027902	Freshwater Lake Sediment	MTTDEKLKLAVSVARAAARSGEYRRLEKLIEIVFRKLNELAPSESSEMHLQDHDRDFKL
Ga0209415_100054135	3300027905	Peatlands Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPPEAGELHLQEHDREFKL
Ga0209583_106468572	3300027910	Watersheds	MTTDEKLKLAVSVARAAARSGEYRRLEKLIEVVFRKLNELAPSESGEMHLQDHDRDFKL
(restricted) Ga0233417_105840742	3300028043	Sediment	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIIFRKLNDLAPPEAGEPHLHEHDREFKL
Ga0268264_119450191	3300028381	Switchgrass Rhizosphere	MTTDEKLKLAVSVARAAAQSGEYRRLDKLIEVVFRKLNELSPPELPESHVHDHDREFKL
Ga0265330_100167314	3300031235	Rhizosphere	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELVPSDAGESHEHDRDFKL
Ga0265330_100616863	3300031235	Rhizosphere	MTTDEKLKLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPSDTADTHEHDREFKL
Ga0265329_101289982	3300031242	Rhizosphere	TDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELVPSDAGESHEHDRDFKL
Ga0307440_12132431	3300031367	Salt Marsh	MTTDEKLRLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPPRAEGEPDDGEPEHEREFKL
Ga0307424_12822531	3300031511	Salt Marsh	MTTDEKLRLAVSVARAAAHSGEYRRLDKLIDVIYRKLNQISPGDSSEAPQEQERDFRL
Ga0247727_105844012	3300031576	Biofilm	KLAVSVARAAARSGEYRRLDRLIEVVFRKLNELAPSEVGEIHLHEHEREFKL
Ga0315535_10407892	3300031699	Salt Marsh Sediment	MTTDEKLRLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPPGAEGEPHDGEPEHEREFKL
Ga0214473_100016069	3300031949	Soil	MTTDDRLRLAVSVARAAARSGEYRQLDKLIEIVFRKLNELVPPEGGEPHVHDREFKL
Ga0214473_114396492	3300031949	Soil	MTRDEKLQLAVSVARAAARSGEYRQLDKLIEIVFRKLNELVPPEGDEPHLHDHDREFKL
Ga0311301_110141671	3300032160	Peatlands Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELVPPEVESQLHEHEREFKL
Ga0315281_100382365	3300032163	Sediment	MTTDDKLKLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPPESEPHVHEHDREFKL
Ga0315268_100786422	3300032173	Sediment	MTTDEKLKLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELVPPESDLHVHDHDREFKL
Ga0315268_102812982	3300032173	Sediment	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPSEGSELHLHDHEREFKL
Ga0315268_103435862	3300032173	Sediment	MTTDEKLKLAVSVARAAAQSGEYRRLDKLIEIVFRKLNELAPPESEPHVHEHEREFKL
Ga0315268_110165452	3300032173	Sediment	MTVDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPSEGGDLHLHDHEREFKL
Ga0315271_112239922	3300032256	Sediment	VSVACAAARSGEYRRLDKLIEIVFRKLNQLAPPDSSEVPLHDHDREFKL
Ga0315286_101185062	3300032342	Sediment	MTTDDKLKLAVSVARAAAHSGEYRRLDKLIETVFRKLNELAPPESEPHVHEHDREFKL
Ga0315286_103306852	3300032342	Sediment	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPAEAGELHLHDHEKEFKL
Ga0335085_108113312	3300032770	Soil	MTTDEKLKLAVSVARAAARSGEYRRLEKLIEVVFRKLNELAPSEAGESPLQDHDRDFKL
Ga0335085_108836162	3300032770	Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELVPAEGAEPHLHEHDREFKL
Ga0335085_116717151	3300032770	Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPSDATESHEHDREFKL
Ga0335082_1000358113	3300032782	Soil	MTTDDKLRLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPSESSEHHLHEQEREFKL
Ga0335070_100495035	3300032829	Soil	MTTDEKLRLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPPETSEHDREFKL
Ga0335070_100546366	3300032829	Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELSPSESEPALHEHEREFKL
Ga0335070_100775282	3300032829	Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPAEGGEPHLHDHEREFKL
Ga0335070_115584852	3300032829	Soil	MTTDEKLRLAVSVARAAAHSGEYRRLDKLIEIVFHKLNELAPPESSELQEHDREFKL
Ga0335081_115340341	3300032892	Soil	MTTDEKLKLAVSVARAAAGSGEYRRLDKLIEVVFRKLNELAPADGGEARERDRDFKL
Ga0335069_1000821115	3300032893	Soil	MTSDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELSPDDSGEPHLHEHDREFKL
Ga0335069_100554547	3300032893	Soil	MTSDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPPESSEIHLQEHDRDFKL
Ga0335084_104081303	3300033004	Soil	MTTDEKLKLAVSVARAAARSGEYRRLEKLIEVVFRKLNELAPPDSGEIHLQDHDRDFKL
Ga0326728_100407024	3300033402	Peat Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPSEGGELHLHDHEREFKL
Ga0214472_106438462	3300033407	Soil	MTTDEKLKLAVSVARAAARSGEYRRLDKLIEIVFRKLNELAPSDTNDLPLQEHDREFKL
Ga0316605_119099971	3300033408	Soil	MTTDEKLKLAVSVARAAARSGEYRQLDKLIEIVFRKLNELIPPESGEPHLHEHDREFKL
Ga0316619_118799272	3300033414	Soil	LAVSVARAAARSGEYRRLDTLIEMVFRKLNELAPPEPTELHEPEREFKL
Ga0316622_1023031732	3300033416	Soil	MTSDEKLKLAVSVARAAARSGEYRRLDLLIEVVFRKLNELAPSEAAEPNVPEREFKL
Ga0316620_102530053	3300033480	Soil	MTTDEKLRLAVSVARAAAHSGEYRRLDKLIEIVFRKLNELAPSGGESGPHDGEPEHEKEFKL
Ga0316621_109894201	3300033488	Soil	MTSDEKLKLAVSVARAAARSGEYRRLDKLIEVVFRKLNELAPSEAAEPNVPEREFKL
Ga0316616_1000656963	3300033521	Soil	MTSDEKLKLAVSVARAAARSGEYRRLDTLIEMVFRKLNELAPPEPTELHEPEREFKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters