Metagenome Family F094035

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094035
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	42 residues
Representative Sequence	RIGDLRSHMDSRFDDMRATWHSELRRVEEVLDARLKHLEER
Number of Associated Samples	88
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.81 %
% of genes near scaffold ends (potentially truncated)	83.02 %
% of genes from short scaffolds (< 2000 bps)	84.91 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.849 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (9.434 % of family members)
Environment Ontology (ENVO)	Unclassified (50.943 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.660 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.52% β-sheet: 0.00% Coil/Unstructured: 43.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01715	IPPT	5.71
PF12706	Lactamase_B_2	4.76
PF00312	Ribosomal_S15	4.76
PF01266	DAO	3.81
PF13483	Lactamase_B_3	2.86
PF00578	AhpC-TSA	2.86
PF01138	RNase_PH	2.86
PF00300	His_Phos_1	1.90
PF13544	Obsolete Pfam Family	1.90
PF08241	Methyltransf_11	1.90
PF00069	Pkinase	1.90
PF01381	HTH_3	1.90
PF00436	SSB	1.90
PF14559	TPR_19	1.90
PF14534	DUF4440	1.90
PF01040	UbiA	1.90
PF01169	UPF0016	0.95
PF00109	ketoacyl-synt	0.95
PF03989	DNA_gyraseA_C	0.95
PF03571	Peptidase_M49	0.95
PF02321	OEP	0.95
PF02687	FtsX	0.95
PF07690	MFS_1	0.95
PF04366	Ysc84	0.95
PF13231	PMT_2	0.95
PF01663	Phosphodiest	0.95
PF00083	Sugar_tr	0.95
PF01425	Amidase	0.95
PF01906	YbjQ_1	0.95
PF06439	3keto-disac_hyd	0.95
PF00717	Peptidase_S24	0.95
PF07929	PRiA4_ORF3	0.95
PF11799	IMS_C	0.95
PF08668	HDOD	0.95
PF00266	Aminotran_5	0.95
PF07075	DUF1343	0.95
PF03481	Sua5_C	0.95
PF08003	Methyltransf_9	0.95
PF07811	TadE	0.95
PF03726	PNPase	0.95
PF13432	TPR_16	0.95
PF00579	tRNA-synt_1b	0.95
PF01144	CoA_trans	0.95
PF01804	Penicil_amidase	0.95
PF00106	adh_short	0.95
PF12847	Methyltransf_18	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.62
COG0324	tRNA A37 N6-isopentenylltransferase MiaA	Translation, ribosomal structure and biogenesis [J]	5.71
COG0184	Ribosomal protein S15P/S13E	Translation, ribosomal structure and biogenesis [J]	4.76
COG1185	Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	Translation, ribosomal structure and biogenesis [J]	3.81
COG0689	Ribonuclease PH	Translation, ribosomal structure and biogenesis [J]	2.86
COG2123	Exosome complex RNA-binding protein Rrp42, RNase PH superfamily	Intracellular trafficking, secretion, and vesicular transport [U]	2.86
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	1.90
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	1.90
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.90
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	0.95
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.95
COG3876	Exo-beta-N-acetylmuramidase YbbC/NamZ, DUF1343 family	Cell wall/membrane/envelope biogenesis [M]	0.95
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.95
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.95
COG2119	Putative Ca2+/H+ antiporter, TMEM165/GDT1 family	General function prediction only [R]	0.95
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	0.95
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	0.95
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.95
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	0.95
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.95
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.85 %
Unclassified	root	N/A	14.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.85 %
Unclassified	root	N/A	14.15 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.85 %
Unclassified	root	N/A	14.15 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	62.26 %
Unclassified	root	N/A	14.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	24.53 %
Unclassified	root	N/A	14.15 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.15 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	10.38 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.15 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.43 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	2.83 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.15 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	2.83 %
Candidatus Sulfotelmatomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.94 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.94 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.94 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.94 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.15 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2.83 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.94 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.94 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.94 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.94 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.15 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2.83 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.94 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.94 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.94 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.94 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005330\|Ga0070690_100712604	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	771	Open in IMG/M
3300005334\|Ga0068869_100295085	All Organisms → cellular organisms → Bacteria	1307	Open in IMG/M
3300005334\|Ga0068869_101191563	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	669	Open in IMG/M
3300005336\|Ga0070680_100521718	All Organisms → cellular organisms → Bacteria → Acidobacteria	1017	Open in IMG/M
3300005354\|Ga0070675_101672837	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300005355\|Ga0070671_101653435	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300005434\|Ga0070709_11670057	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300005458\|Ga0070681_11740306	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300005458\|Ga0070681_11740306	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300005542\|Ga0070732_10645965	Not Available	643	Open in IMG/M
3300005544\|Ga0070686_100848612	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	739	Open in IMG/M
3300005564\|Ga0070664_100126430	All Organisms → cellular organisms → Bacteria	2243	Open in IMG/M
3300005564\|Ga0070664_102002255	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300005614\|Ga0068856_100051851	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4045	Open in IMG/M
3300005618\|Ga0068864_100011438	All Organisms → cellular organisms → Bacteria	7331	Open in IMG/M
3300005836\|Ga0074470_11457115	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300005843\|Ga0068860_101601218	All Organisms → cellular organisms → Bacteria → Acidobacteria	673	Open in IMG/M
3300006050\|Ga0075028_100373543	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M
3300006102\|Ga0075015_100047451	All Organisms → cellular organisms → Bacteria	2020	Open in IMG/M
3300006237\|Ga0097621_100412864	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300006354\|Ga0075021_10060109	All Organisms → cellular organisms → Bacteria	2211	Open in IMG/M
3300006881\|Ga0068865_101011469	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	728	Open in IMG/M
3300007265\|Ga0099794_10791614	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	507	Open in IMG/M
3300009038\|Ga0099829_11695254	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	520	Open in IMG/M
3300009174\|Ga0105241_12221388	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300009176\|Ga0105242_10356212	All Organisms → cellular organisms → Bacteria → Acidobacteria	1353	Open in IMG/M
3300009176\|Ga0105242_11082759	Not Available	814	Open in IMG/M
3300009176\|Ga0105242_11957406	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300009176\|Ga0105242_12101895	Not Available	608	Open in IMG/M
3300009177\|Ga0105248_10040582	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5217	Open in IMG/M
3300009177\|Ga0105248_10543081	All Organisms → cellular organisms → Bacteria → Acidobacteria	1311	Open in IMG/M
3300009524\|Ga0116225_1064120	All Organisms → cellular organisms → Bacteria → Acidobacteria	1742	Open in IMG/M
3300009545\|Ga0105237_11529417	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300009545\|Ga0105237_11684449	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	641	Open in IMG/M
3300009551\|Ga0105238_10042569	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4598	Open in IMG/M
3300010371\|Ga0134125_11485551	Not Available	738	Open in IMG/M
3300010373\|Ga0134128_10079423	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	3747	Open in IMG/M
3300010397\|Ga0134124_12852946	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300010401\|Ga0134121_11664571	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300011270\|Ga0137391_10620878	Not Available	904	Open in IMG/M
3300011271\|Ga0137393_10802345	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300011271\|Ga0137393_11193485	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	646	Open in IMG/M
3300012210\|Ga0137378_10913518	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300012917\|Ga0137395_10940757	Not Available	623	Open in IMG/M
3300012971\|Ga0126369_12267595	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300013296\|Ga0157374_12250967	Not Available	572	Open in IMG/M
3300014325\|Ga0163163_10402315	All Organisms → cellular organisms → Bacteria → Acidobacteria	1427	Open in IMG/M
3300014501\|Ga0182024_10543983	All Organisms → cellular organisms → Bacteria → Acidobacteria	1467	Open in IMG/M
3300014501\|Ga0182024_12727098	Not Available	528	Open in IMG/M
3300014968\|Ga0157379_10264871	All Organisms → cellular organisms → Bacteria → Acidobacteria	1562	Open in IMG/M
3300017972\|Ga0187781_10304354	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300018047\|Ga0187859_10429006	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	728	Open in IMG/M
3300018062\|Ga0187784_10219004	All Organisms → cellular organisms → Bacteria	1552	Open in IMG/M
3300021168\|Ga0210406_10534557	All Organisms → cellular organisms → Bacteria → Acidobacteria	923	Open in IMG/M
3300021170\|Ga0210400_10002568	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	16682	Open in IMG/M
3300021181\|Ga0210388_10239624	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1591	Open in IMG/M
3300021405\|Ga0210387_10657159	All Organisms → cellular organisms → Bacteria → Acidobacteria	930	Open in IMG/M
3300021432\|Ga0210384_10019085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6653	Open in IMG/M
3300021432\|Ga0210384_11141595	Not Available	683	Open in IMG/M
3300021477\|Ga0210398_10456592	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1041	Open in IMG/M
3300021559\|Ga0210409_10614758	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300021559\|Ga0210409_10620464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	950	Open in IMG/M
3300021559\|Ga0210409_11719593	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300025506\|Ga0208937_1145325	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300025899\|Ga0207642_10742582	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300025913\|Ga0207695_10871623	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300025914\|Ga0207671_10346298	All Organisms → cellular organisms → Bacteria → Acidobacteria	1178	Open in IMG/M
3300025916\|Ga0207663_11727010	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	503	Open in IMG/M
3300025924\|Ga0207694_10052757	Not Available	3152	Open in IMG/M
3300025934\|Ga0207686_10244522	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1307	Open in IMG/M
3300025934\|Ga0207686_10518573	All Organisms → cellular organisms → Bacteria → Acidobacteria	927	Open in IMG/M
3300025934\|Ga0207686_10666616	Not Available	824	Open in IMG/M
3300025937\|Ga0207669_10918876	All Organisms → cellular organisms → Bacteria → Acidobacteria	732	Open in IMG/M
3300025938\|Ga0207704_10927600	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300025942\|Ga0207689_11535895	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300025944\|Ga0207661_11368172	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300025945\|Ga0207679_10106034	All Organisms → cellular organisms → Bacteria → Acidobacteria	2208	Open in IMG/M
3300025949\|Ga0207667_10635797	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300026035\|Ga0207703_10957501	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300026088\|Ga0207641_11204747	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	757	Open in IMG/M
3300026088\|Ga0207641_12244932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	546	Open in IMG/M
3300026089\|Ga0207648_10647748	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300026095\|Ga0207676_10027250	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	4255	Open in IMG/M
3300026095\|Ga0207676_11733408	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	623	Open in IMG/M
3300027641\|Ga0208827_1040799	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1602	Open in IMG/M
3300027754\|Ga0209596_1156736	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1008	Open in IMG/M
3300027765\|Ga0209073_10089730	All Organisms → cellular organisms → Bacteria → Acidobacteria	1071	Open in IMG/M
3300027826\|Ga0209060_10010975	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5343	Open in IMG/M
3300028381\|Ga0268264_11671256	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300029908\|Ga0311341_10845983	Not Available	504	Open in IMG/M
3300030045\|Ga0302282_1337526	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300030520\|Ga0311372_12762382	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300031057\|Ga0170834_109872709	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300031057\|Ga0170834_112455542	Not Available	1125	Open in IMG/M
3300031234\|Ga0302325_11149332	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300031236\|Ga0302324_101365986	All Organisms → cellular organisms → Bacteria → Acidobacteria	930	Open in IMG/M
3300031525\|Ga0302326_11145001	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1076	Open in IMG/M
3300031715\|Ga0307476_11109260	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300031754\|Ga0307475_11287180	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300032180\|Ga0307471_101931124	All Organisms → cellular organisms → Bacteria → Acidobacteria	739	Open in IMG/M
3300032421\|Ga0310812_10200173	All Organisms → cellular organisms → Bacteria → Acidobacteria	866	Open in IMG/M
3300032805\|Ga0335078_10540366	Not Available	1486	Open in IMG/M
3300032954\|Ga0335083_10258935	All Organisms → cellular organisms → Bacteria → Acidobacteria	1551	Open in IMG/M
3300033412\|Ga0310810_10095418	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3553	Open in IMG/M
3300033475\|Ga0310811_10360561	All Organisms → cellular organisms → Bacteria	1622	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.43%
Host-Associated	Host-Associated	40.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.83%
Plants	Host-Associated → Plants	40.57%
Aquatic	Environmental → Aquatic	6.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.04%
Peat	Environmental → Terrestrial → Peat	5.66%
Sediment	Environmental → Aquatic → Sediment	3.77%
Freshwater	Environmental → Aquatic → Freshwater	2.83%
Roots	Host-Associated → Plants → Roots	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.04%
Loam	Environmental → Terrestrial → Soil → Loam	8.49%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.66%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.66%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.89%
Lake	Environmental → Aquatic → Freshwater → Lake	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.49%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.60%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.77%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.89%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.94%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025506	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029908	II_Bog_E1 coassembly	Environmental	Open in IMG/M
3300030045	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070690_1007126041	3300005330	Switchgrass Rhizosphere	NARLSDLRAHMDSRFDDMKDMWRGELRRVEEVLDARLKHLEERTS*
Ga0068869_1002950853	3300005334	Miscanthus Rhizosphere	LVNNARLSDLRSHLDVRFEEMKDLWRSELHRVEEVLDARLKHLEER*
Ga0068869_1011915631	3300005334	Miscanthus Rhizosphere	LIGILINNARLSDLRAHMDSRFDDMKDMWRGELRRVEEVLDARLKHLEERTS*
Ga0070680_1005217182	3300005336	Corn Rhizosphere	MNSRINDLRSHMDSRFEEMRATWHSELRRVEEVLDARLKHLEER*
Ga0070675_1016728372	3300005354	Miscanthus Rhizosphere	GDNNTRIAELRTHMDNRFDDMKDMWRSELHRVEEVLDARLRHLEER*
Ga0070671_1016534351	3300005355	Switchgrass Rhizosphere	NTRIGETNIRIGELRSHMDVRFEEMKDLWRSELHRVEEVIDARLKHIER*
Ga0070709_116700571	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	ETNSRIGELRSHMDARFEEMKDLWRSELHRVEEVIDARLRHIEGR*
Ga0070681_117403062	3300005458	Corn Rhizosphere	MNSRINDLRSHMDSCFDEMRATWHSELRRVEEVLDARLKHLEER*
Ga0070681_117403063	3300005458	Corn Rhizosphere	NNSRLSDLRSHMDSRFDDMRATWHSELRRVEEVLDARLKHLEER*
Ga0070732_106459651	3300005542	Surface Soil	SRMADIRVHFDQRIDEVKETWRSELRRVEEVLDARLNHLEERLR*
Ga0070686_1008486121	3300005544	Switchgrass Rhizosphere	LSDLRAHMDSRFDDMKDMWRGELRRVEEVLDARLKHLEERTS*
Ga0070664_1001264303	3300005564	Corn Rhizosphere	SRIGDLRSHIDSRFDEMRSTWQSELRRVEEVLDARLKHLEER*
Ga0070664_1020022551	3300005564	Corn Rhizosphere	RLGDLRSHMDSRFDDMRTHWQSELRRVEEVLDARLRHLEEH*
Ga0068856_1000518511	3300005614	Corn Rhizosphere	GDLRSHIDSRFDEMRSTWQSELRRVEEVLDARLKHLEER*
Ga0068864_1000114386	3300005618	Switchgrass Rhizosphere	LAKQTGRIGNNDAKIGELRSHMDVRFEEMKDLWRSELHRVEEVIDARLKHIER*
Ga0074470_114571151	3300005836	Sediment (Intertidal)	THMDARFDEMRDTWRAELRRIEETIDARLKRLEQS*
Ga0068860_1016012181	3300005843	Switchgrass Rhizosphere	HMDSRFDDIRATWHSELRRVEGVLDARLKHLEER*
Ga0075028_1003735431	3300006050	Watersheds	LRSHMDVPFEEMKDPWRSELHRVREVIVARLKHIKGR*
Ga0075015_1000474511	3300006102	Watersheds	MHMNARFDAVNQRLNDLRDLWSTELHRVEEVLDARLKHLEER*
Ga0097621_1004128641	3300006237	Miscanthus Rhizosphere	RIDDLRSNVDTRIDDLRSHMDSRFDEMRSTWTSELRRVKEVLDARLKHLEER*
Ga0075021_100601091	3300006354	Watersheds	LMHMNARFDAVNQRLNDLRDLWSTELHRVEEVLDARLKHLEER*
Ga0068865_1010114693	3300006881	Miscanthus Rhizosphere	AHMDSRFDDMKDMWRGELRRVEEVLDARLKHLEERTS*
Ga0099794_107916143	3300007265	Vadose Zone Soil	RLAEIDRGLNARIDDLRSHMDARFDDMRTTWQSELRRVEEVLDAA*
Ga0099829_116952542	3300009038	Vadose Zone Soil	MDSRFEDIKDTWRAELRRVEEVIDARLKHLEERG*
Ga0105241_122213881	3300009174	Corn Rhizosphere	RLSDLKSHVDSRFDDMKDMSRSELHRVEEVLDARLKHLEERT*
Ga0105242_103562124	3300009176	Miscanthus Rhizosphere	GDVNSRIDDLRGHMDSRFDEMRATWHSELRRVEEVLDARLKHLEER*
Ga0105242_110827592	3300009176	Miscanthus Rhizosphere	GDLNARVGETNARIAELRSHMDSRFEEMKDLWRSELHRVEEVIDARLRHIEGR*
Ga0105242_119574062	3300009176	Miscanthus Rhizosphere	ADGAHMDSRFDDMRATWHSELRRVEEVLDARLKHLEER*
Ga0105242_121018951	3300009176	Miscanthus Rhizosphere	ELRSHMDGRFDEMRATWQAELHRVEEVLDARLKHLEER*
Ga0105248_100405828	3300009177	Switchgrass Rhizosphere	TRIGETNTRIGELRSHMDVRFEEMKDLWRSELHRVEEVIDARLKHIER*
Ga0105248_105430814	3300009177	Switchgrass Rhizosphere	GDLRSHMDSRFDDMRTHWQSELRRVEEVLDARLRHLEEH*
Ga0116225_10641201	3300009524	Peatlands Soil	IDDFRLHVDSRFSATDALFTERLRRVEEVMDARLKHLEES*
Ga0105237_115294171	3300009545	Corn Rhizosphere	RIGDLRSHMDSRFDDMRATWHSELRRVEEVLDARLKHLEER*
Ga0105237_116844491	3300009545	Corn Rhizosphere	NSRLSDLKSHVDSRFDDMKDMWRSELHRVEEVLDARLKHMEERR*
Ga0105238_100425691	3300009551	Corn Rhizosphere	MNSRINDLRSHMDSRFDEMRATWHSELRRVEEVLDARLKHLEER*
Ga0134125_114855511	3300010371	Terrestrial Soil	MDRKMDHRFDDMKDMWRSELHRVEEVLDARLKHLEERA*
Ga0134128_100794232	3300010373	Terrestrial Soil	VAETNTRIGELRSHMDVRFEEMKDLWRSELHRVEEVIDARLKHIEER*
Ga0134124_128529462	3300010397	Terrestrial Soil	ACGPMDSRFDDMRATWHSELRRVEEVLDARLKHLEER*
Ga0134121_116645711	3300010401	Terrestrial Soil	TNTRIGETNIRIGELRSHMDVRFEEMKGLWRSELHRVEEVIDARLKHIER*
Ga0137391_106208781	3300011270	Vadose Zone Soil	NSRLTHLRIHVDRRFDELRDLWRAELRRVGGVIDARLKHLQDRV*
Ga0137393_108023451	3300011271	Vadose Zone Soil	IGELRSHMDARFDDMRETWRSELHRVEEVIDARLKHLEER*
Ga0137393_111934854	3300011271	Vadose Zone Soil	RSHMDVRFDDMRTTWQSELQRVEEVLDARLKHLEAR*
Ga0137378_109135181	3300012210	Vadose Zone Soil	RFSRIDQQFADSREMWRSELRRVEEVLDARLKHLEER*
Ga0137395_109407572	3300012917	Vadose Zone Soil	DHRFDDMRDMWRSELHRVEEVLDARLKHLEEGFR*
Ga0126369_122675951	3300012971	Tropical Forest Soil	INNARLSDLRSHIDHRFDDMKDLWRSELHRVEEVLDARLKHLEER*
Ga0157374_122509671	3300013296	Miscanthus Rhizosphere	NDRGSHMDSRFDEMRAAWHSELRRVEEVLDARLKHLEER*
Ga0163163_104023151	3300014325	Switchgrass Rhizosphere	DVNSRIDDLRGHMDSRFDEMRATWHSELRRVEEVLDARLKHLEER*
Ga0182024_105439831	3300014501	Permafrost	DSRINDLRSHMDSRFDEMRSTWTSELRRVGEILDARLKHLEER*
Ga0182024_127270983	3300014501	Permafrost	HMDNRFDDMKETWRAELQRVEGVLDARLKHFEDS*
Ga0157379_102648711	3300014968	Switchgrass Rhizosphere	DDLRSHMDSRFDEMRSAWTSELRRVKEVLDARLKHLEER*
Ga0187781_103043541	3300017972	Tropical Peatland	ARFADLSSHIDARFDDMRSTWKSELHRVEEVLDARLKHLEER
Ga0187859_104290062	3300018047	Peatland	LVGILVNNSRLNDLRGHMDARFADMRETWRSDLRRVEEVLDARLKHLEAR
Ga0187784_102190044	3300018062	Tropical Peatland	SHIDARFDDMRSTWKSELHRVEEVLDARLKHLEER
Ga0210406_105345571	3300021168	Soil	MDKKMDQRFIDAKDMWRSELHRVEEVLDARLKHLEER
Ga0210400_1000256810	3300021170	Soil	MNGRLGDVNARLGDLRHHIDSQFDEVGRRFDDMKDVWRSELHRVEEMLDAKLKHLEERA
Ga0210388_102396243	3300021181	Soil	MNSRLDDLRSHMDARFDGLKDMWRSELHRVEEVLDARLRHLEER
Ga0210387_106571593	3300021405	Soil	LTRLSDLGSHMDIRFNEMRDLWRSELYRVEQVIDARLKHLE
Ga0210384_100190853	3300021432	Soil	LINNSRLTGLRVHVDGRFDEMRDLWRAELRRVEEVIDARLKHLEERG
Ga0210384_111415952	3300021432	Soil	GELRSDMNARFAEMRDASRADLRRVEEVIDARLKHLEER
Ga0210398_104565921	3300021477	Soil	LSERMEPDDMRDLWRAELRRVEEVLDARLKHLEERG
Ga0210409_106147583	3300021559	Soil	AHMDTRFDDMRDTWRSELHRVEEVLDARLRHLAERG
Ga0210409_106204641	3300021559	Soil	TELRSHMDARFDDMRVTWQAALRRVEEVLDARLKHLEER
Ga0210409_117195931	3300021559	Soil	RFNAMDVRFEEVKDLWRSELHRVEEVLDARLKHLEER
Ga0208937_11453252	3300025506	Peatland	ARIAELRGHMDIRFDEMRDLWRSELYRVEQAIDARLKHLEERG
Ga0207642_107425821	3300025899	Miscanthus Rhizosphere	RNHVDSRFDDMKDMWRSELHRVEEVLDARLKHLEERI
Ga0207707_105761213	3300025912	Corn Rhizosphere	RIGELRSHMDVRFEEMKDLWRSELHRVEEVIDARLKHIER
Ga0207695_108716231	3300025913	Corn Rhizosphere	IGDLRSHIDSRFDEIRSTWQSELRRVEEVLDARLKHLEER
Ga0207671_103462981	3300025914	Corn Rhizosphere	IGELRSHMDVRFEEMKDLWRSELHRVEEVIDARLKHIEH
Ga0207663_117270102	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	DLRSHMDSRFDEMRSTWTSELRRVEEVLDARLKHLEER
Ga0207694_100527571	3300025924	Corn Rhizosphere	SHVDSRFDDMKDMSRSELHRVEEVLDARLKHLEERT
Ga0207686_102445223	3300025934	Miscanthus Rhizosphere	GETNARIGELRSHMDSRFEEMKDLWRSELHRVEEVIDARLRHIEGR
Ga0207686_105185732	3300025934	Miscanthus Rhizosphere	LRSHLDVRFEEMKDLWRSELHRVGEVLDARLKHLEER
Ga0207686_106666161	3300025934	Miscanthus Rhizosphere	INNSRLSDLRSHMDVRLDELKEMWRSELHRVEEVLDARLKHLEER
Ga0207669_109188762	3300025937	Miscanthus Rhizosphere	ISELRTHMDVRFEEMKDLWRSELHRVEEVIDARLKHIER
Ga0207704_109276003	3300025938	Miscanthus Rhizosphere	LRAHMDSRFDDMKDMWRGELRRVEEVLDARLKHLEERTS
Ga0207689_115358952	3300025942	Miscanthus Rhizosphere	ILVNNARLSDLRSHLDVRFEEMKDLWRSELHRVEEVLDARLKHLEER
Ga0207661_113681721	3300025944	Corn Rhizosphere	DSRIGDLRSHMDFRFDEMRTTWKSELRRVEEVLDARLKHLEER
Ga0207679_101060343	3300025945	Corn Rhizosphere	SRIGDLRSHIDSRFDEMRSTWQSELRRVEEVLDARLKHLEER
Ga0207667_106357971	3300025949	Corn Rhizosphere	MNSRINDLRSHMDSRFEEMRATWHSELRRVEEVLD
Ga0207703_109575011	3300026035	Switchgrass Rhizosphere	INNARLSDLRAHMDSRFDDMKDMWRGELRRVEEVLDARLKHLEERTS
Ga0207641_112047472	3300026088	Switchgrass Rhizosphere	NGRIGELRSHFDHRFDDLKETWRSELRRVEEVLDARLSHLEERLR
Ga0207641_122449321	3300026088	Switchgrass Rhizosphere	MNSRINDLRSHMDSCFDEMRATWHSELRRVEEVLDARLKHL
Ga0207648_106477481	3300026089	Miscanthus Rhizosphere	MQAEMNRRFDESKDLWRSELHRVEEILDARLKHLEER
Ga0207676_100272502	3300026095	Switchgrass Rhizosphere	LAKQTGRIGNNDAKIGELRSHMDVRFEEMKDLWRSELHRVEEVIDARLKHIER
Ga0207676_117334082	3300026095	Switchgrass Rhizosphere	FDHRFDDLKETWRSELRRVEEVLDARLSHLEERLR
Ga0208827_10407991	3300027641	Peatlands Soil	DDLRSHMDTRFSATDALFTERLRRVEEVLDARLKHLEES
Ga0209596_11567363	3300027754	Freshwater Lake	AHMDHRFDDTRDMWRTELHRVEEILDARLKHIEERR
Ga0209073_100897302	3300027765	Agricultural Soil	MNSRINDLRSHMDSCFDEMRATWHSELRRVEEVLDARLKHLEER
Ga0209060_100109751	3300027826	Surface Soil	NSPLSDVNTRITELRSHLDDRFNVVDRRFEEMKDMWRSELRRVEEVLDARLRHLEER
Ga0268264_116712561	3300028381	Switchgrass Rhizosphere	TDLRSHMDSRFDDIRATWHSELRRVEGVLDARLKHLEER
Ga0311341_108459831	3300029908	Bog	SRLNDMNGRISDLRSHMDTRFDDMRVMWQSELHRVEEVLDARLRHLEEN
Ga0302282_13375261	3300030045	Fen	FKGIDAPLDGMNQRFDDLRDLWRAELHRVEEVLGARLKHLEER
Ga0311372_127623821	3300030520	Palsa	LNDLRRHMDARFDDMRETWRSELRRVEEVIDARLKRLEAR
Ga0170834_1098727093	3300031057	Forest Soil	MDRGLNARIDDLRSHMDTRFDDMRATWQSELRRVEGVLDARLKHLEAR
Ga0170834_1124555422	3300031057	Forest Soil	HVDGRFDEMRDLWRAELRRVEEVIDARLKHLEDRG
Ga0302325_111493322	3300031234	Palsa	RLNDLRSHIDARFDEMRETWRAELRRVEEVLDARLKHIEKD
Ga0302324_1013659862	3300031236	Palsa	RLGAAIKESRDHMDTRFNEIRDLWRSELYRVEQVFDARLKHLEERGR
Ga0302326_111450012	3300031525	Palsa	RSHMDNRFDDARDSWRAELRRVEEVIDARLKHIEDR
Ga0307476_111092601	3300031715	Hardwood Forest Soil	LGDLSSSLNARFGDLRAHMDVRFEEMKDLWRSELHRVEEVIDARLKHIEER
Ga0307475_112871801	3300031754	Hardwood Forest Soil	ELRSHMDSRFDDIRATWQAELRRVEEVLDARLKHLEER
Ga0307471_1019311242	3300032180	Hardwood Forest Soil	TDLRSHMDSLFDDMRATWHSELRRVEEVLDARLKHLEER
Ga0310812_102001731	3300032421	Soil	INDLRSHMDSCFDEMRATWHSELRRVEEVLDARLKHLEER
Ga0335078_105403662	3300032805	Soil	LDLQRRMDQRFDEMKELWQSELRRVEEILDARLKHIEER
Ga0335083_102589353	3300032954	Soil	MDARIDDLRTDLKDTWRAELRRVEEVLDARLKHLEER
Ga0310810_100954181	3300033412	Soil	MNSRINDLRSHMDSRFDEMRATWHSELRRVEEVLDARLKHLEER
Ga0310811_103605611	3300033475	Soil	VNSRINDLRSHMDSRFDEMRATWHSELRRVEEVLDARLKHLEER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094035

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences