Metagenome Family F094024

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094024
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	68 residues
Representative Sequence	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQA
Number of Associated Samples	73
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	48.08 %
% of genes near scaffold ends (potentially truncated)	83.96 %
% of genes from short scaffolds (< 2000 bps)	93.40 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (16.038 % of family members)
Environment Ontology (ENVO)	Unclassified (68.868 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (82.075 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.60% β-sheet: 20.43% Coil/Unstructured: 70.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00990	GGDEF	35.85
PF12244	DUF3606	8.49
PF07589	PEP-CTERM	3.77
PF01161	PBP	2.83
PF01381	HTH_3	0.94
PF07238	PilZ	0.94
PF02586	SRAP	0.94
PF01527	HTH_Tnp_1	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	2.83
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.34 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	34.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.89 %
uncultured bacterium CSL12	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	32.08 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.94 %
uncultured bacterium CSL12	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	32.08 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
uncultured bacterium CSL12	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	32.08 %
Xanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
uncultured bacterium CSL12	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001976\|JGI24752J21851_1066171	Not Available	503	Open in IMG/M
3300004114\|Ga0062593_100133411	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300004156\|Ga0062589_100476906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1043	Open in IMG/M
3300004157\|Ga0062590_100661227	Not Available	932	Open in IMG/M
3300004479\|Ga0062595_102513404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	514	Open in IMG/M
3300005093\|Ga0062594_101562852	Not Available	681	Open in IMG/M
3300005093\|Ga0062594_101998252	Not Available	619	Open in IMG/M
3300005295\|Ga0065707_10815295	Not Available	594	Open in IMG/M
3300005328\|Ga0070676_10571782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	811	Open in IMG/M
3300005329\|Ga0070683_101435454	Not Available	663	Open in IMG/M
3300005331\|Ga0070670_100265321	Not Available	1497	Open in IMG/M
3300005331\|Ga0070670_100329623	Not Available	1339	Open in IMG/M
3300005331\|Ga0070670_101808135	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300005333\|Ga0070677_10054957	All Organisms → cellular organisms → Bacteria → Proteobacteria	1623	Open in IMG/M
3300005333\|Ga0070677_10797328	Not Available	539	Open in IMG/M
3300005335\|Ga0070666_10322232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1102	Open in IMG/M
3300005354\|Ga0070675_100841493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	839	Open in IMG/M
3300005354\|Ga0070675_101400197	Not Available	645	Open in IMG/M
3300005355\|Ga0070671_100083427	All Organisms → cellular organisms → Bacteria	2672	Open in IMG/M
3300005355\|Ga0070671_100633594	Not Available	925	Open in IMG/M
3300005355\|Ga0070671_100987833	All Organisms → cellular organisms → Bacteria → Proteobacteria	737	Open in IMG/M
3300005356\|Ga0070674_100833776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	798	Open in IMG/M
3300005364\|Ga0070673_100840022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	849	Open in IMG/M
3300005364\|Ga0070673_102067222	Not Available	541	Open in IMG/M
3300005367\|Ga0070667_101380928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	661	Open in IMG/M
3300005457\|Ga0070662_101464548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	589	Open in IMG/M
3300005459\|Ga0068867_100136217	Not Available	1914	Open in IMG/M
3300005459\|Ga0068867_100420989	Not Available	1131	Open in IMG/M
3300005539\|Ga0068853_101218608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	727	Open in IMG/M
3300005543\|Ga0070672_101761564	Not Available	557	Open in IMG/M
3300005543\|Ga0070672_102071656	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300005549\|Ga0070704_100506021	Not Available	1049	Open in IMG/M
3300005577\|Ga0068857_100922983	Not Available	838	Open in IMG/M
3300005577\|Ga0068857_100942431	Not Available	829	Open in IMG/M
3300005618\|Ga0068864_101011900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	824	Open in IMG/M
3300005618\|Ga0068864_101764191	Not Available	624	Open in IMG/M
3300005719\|Ga0068861_102574514	Not Available	512	Open in IMG/M
3300005840\|Ga0068870_10341220	Not Available	958	Open in IMG/M
3300005840\|Ga0068870_11010377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	594	Open in IMG/M
3300005841\|Ga0068863_100748466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	973	Open in IMG/M
3300005842\|Ga0068858_102580901	Not Available	502	Open in IMG/M
3300005843\|Ga0068860_100522942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1186	Open in IMG/M
3300005843\|Ga0068860_101664621	Not Available	660	Open in IMG/M
3300006237\|Ga0097621_100886060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	830	Open in IMG/M
3300006880\|Ga0075429_101554288	Not Available	575	Open in IMG/M
3300006969\|Ga0075419_11346215	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300009098\|Ga0105245_10920180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	917	Open in IMG/M
3300009156\|Ga0111538_13458813	Not Available	548	Open in IMG/M
3300009177\|Ga0105248_10606679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1235	Open in IMG/M
3300009553\|Ga0105249_11171360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	839	Open in IMG/M
3300011119\|Ga0105246_12513245	Not Available	507	Open in IMG/M
3300012899\|Ga0157299_10288348	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300012907\|Ga0157283_10252611	Not Available	586	Open in IMG/M
3300012916\|Ga0157310_10015020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1931	Open in IMG/M
3300013296\|Ga0157374_11629626	Not Available	670	Open in IMG/M
3300013296\|Ga0157374_11692555	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300013297\|Ga0157378_10340102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1463	Open in IMG/M
3300013297\|Ga0157378_10776241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	983	Open in IMG/M
3300013297\|Ga0157378_11737270	Not Available	671	Open in IMG/M
3300013306\|Ga0163162_11223657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	852	Open in IMG/M
3300013306\|Ga0163162_12228829	Not Available	629	Open in IMG/M
3300013306\|Ga0163162_12676116	Not Available	574	Open in IMG/M
3300014325\|Ga0163163_10344578	Not Available	1546	Open in IMG/M
3300014326\|Ga0157380_10317571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1443	Open in IMG/M
3300014969\|Ga0157376_10269801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1598	Open in IMG/M
3300014969\|Ga0157376_11622100	Not Available	681	Open in IMG/M
3300014969\|Ga0157376_12056252	Not Available	609	Open in IMG/M
3300014969\|Ga0157376_12346517	Not Available	573	Open in IMG/M
3300015374\|Ga0132255_101651642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	971	Open in IMG/M
3300018073\|Ga0184624_10136655	Not Available	1070	Open in IMG/M
3300018083\|Ga0184628_10054532	Not Available	2021	Open in IMG/M
3300018083\|Ga0184628_10059565	All Organisms → cellular organisms → Bacteria → Proteobacteria	1934	Open in IMG/M
3300018476\|Ga0190274_10367759	Not Available	1377	Open in IMG/M
3300018476\|Ga0190274_11104500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	873	Open in IMG/M
3300018476\|Ga0190274_12264738	Not Available	640	Open in IMG/M
3300018476\|Ga0190274_12670476	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium CSL12	596	Open in IMG/M
3300022756\|Ga0222622_10015779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3731	Open in IMG/M
3300023067\|Ga0247743_1017857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	906	Open in IMG/M
3300023263\|Ga0247800_1026091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	975	Open in IMG/M
3300025893\|Ga0207682_10422437	Not Available	631	Open in IMG/M
3300025899\|Ga0207642_10069591	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
3300025901\|Ga0207688_10012014	All Organisms → cellular organisms → Bacteria → Proteobacteria	4713	Open in IMG/M
3300025908\|Ga0207643_10290165	Not Available	1016	Open in IMG/M
3300025923\|Ga0207681_10310550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1250	Open in IMG/M
3300025925\|Ga0207650_10283958	Not Available	1348	Open in IMG/M
3300025925\|Ga0207650_11312989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	616	Open in IMG/M
3300025926\|Ga0207659_11233582	Not Available	642	Open in IMG/M
3300025926\|Ga0207659_11666734	Not Available	543	Open in IMG/M
3300025940\|Ga0207691_10695606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	857	Open in IMG/M
3300025940\|Ga0207691_11392844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	576	Open in IMG/M
3300025960\|Ga0207651_10748891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	863	Open in IMG/M
3300025961\|Ga0207712_10219884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1518	Open in IMG/M
3300025986\|Ga0207658_11262419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	675	Open in IMG/M
3300025986\|Ga0207658_11591975	Not Available	597	Open in IMG/M
3300026075\|Ga0207708_10926412	Not Available	755	Open in IMG/M
3300026095\|Ga0207676_11078157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	793	Open in IMG/M
3300026095\|Ga0207676_11089757	Not Available	789	Open in IMG/M
3300026095\|Ga0207676_11411915	Not Available	692	Open in IMG/M
3300026121\|Ga0207683_10030084	All Organisms → cellular organisms → Bacteria → Proteobacteria	4704	Open in IMG/M
3300027880\|Ga0209481_10497493	Not Available	629	Open in IMG/M
3300028381\|Ga0268264_12657392	Not Available	505	Open in IMG/M
3300028587\|Ga0247828_11232762	Not Available	503	Open in IMG/M
3300030339\|Ga0311360_11088462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	630	Open in IMG/M
3300032017\|Ga0310899_10280222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	767	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	74.53%
Environmental	Environmental	25.47%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	74.53%
Terrestrial	Environmental → Terrestrial	21.70%
Aquatic	Environmental → Aquatic	3.77%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	47.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.47%
Soil	Environmental → Terrestrial → Soil	20.75%
Sediment	Environmental → Aquatic → Sediment	3.77%
Roots	Host-Associated → Plants → Roots	1.89%
Peat	Environmental → Terrestrial → Peat	0.94%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	29.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	23.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	17.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.77%
Loam	Environmental → Terrestrial → Soil → Loam	2.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	29.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	23.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.49%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	16.04%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	12.26%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	10.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.66%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.77%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023067	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24752J21851_10661712	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	IRWRVLLLRKAGRRIPWEILINEPGLIGRIRTHSCTYSDQKPYDVAVLNVSDSPIAGGIELLEPQLLMLGDQALRAE*
Ga0062593_1001334111	3300004114	Soil	MRKAGRRIPWETLVNEPGLVGTIRTHSCNYGSQGPYTVAVLRGESPTAAGIELIEPQLLMLGDQAL
Ga0062589_1004769062	3300004156	Soil	MRKAGRRIPWETLVNEPGLVGTIRTHSCNYGSQGPYTVAVLRGESPTAAGIELIEPQLLM
Ga0062590_1006612271	3300004157	Soil	VRFVAEAGRRIPWKTLIDEPGLIGTIRTHSCIYGDQEAYDVAVLNVSDSPIAEGIELIEL
Ga0062595_1025134042	3300004479	Soil	MRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAG
Ga0062594_1015628521	3300005093	Soil	MQHVGKIRWRVLLLRKAGRRIPWEILINEPGLIGRIRTHSCTYSDQKPYDVAVLNVSDSPIAGGIE
Ga0062594_1019982522	3300005093	Soil	MKWRVRFMRKTGRRIPWKILINEPGLIGTIRTHSCTYGDQEPYSVAVLNASDSPIADGIELIEPRRLML
Ga0065707_108152952	3300005295	Switchgrass Rhizosphere	MQHVGKIRWRVLLLRKAGRRIPWEILINEPGLIGRIRTHSCTYGDQKPYDVAVLNVSDSPIAGGIELLEPQLLMLGDQALILRGYEQLQN
Ga0070676_105717821	3300005328	Miscanthus Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMAAGIELIEPQLLMLGDQALVL
Ga0070683_1014354541	3300005329	Corn Rhizosphere	MQHVGKIRWRVLLLRKAGRRIPWEILINEPGLIGRIRTHSCTYSDQKPYDVAVLNVSDSPIAGGIELLEPQLL
Ga0070670_1002653211	3300005331	Switchgrass Rhizosphere	MRLMRKAGRRIPWKNLINEPGLIGTIRTRSCTYGDQEPYSVAVLNVSDSPIAEGIELLEPQLLMLGD
Ga0070670_1003296231	3300005331	Switchgrass Rhizosphere	MRKAGRRIPWKILINELELVGTIRTRSCNYGGQAPYSVAVLHASDSPIEEGIELREPQLLMLGGQALILRGYERLQND*
Ga0070670_1018081351	3300005331	Switchgrass Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGD
Ga0070677_100549573	3300005333	Miscanthus Rhizosphere	MRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQALVLRGYE
Ga0070677_107973281	3300005333	Miscanthus Rhizosphere	VLLLRKAGRRIPWEILINEPGLIGRIRTHSCTYGDQKPYDVAVLNVSDSPIAGGIELLEPQLLMLGDQALILRGYEQ
Ga0070666_103222321	3300005335	Switchgrass Rhizosphere	MRKAGRRIPWETLVNEPGLVGTIRTHSCNYGSQGPYTVAVLRGESPTAA
Ga0070675_1008414931	3300005354	Miscanthus Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQALVLRGY
Ga0070675_1014001972	3300005354	Miscanthus Rhizosphere	MRLMRKAGRRIPWKNLINEPGLIGTIRTRSCTYGDQEPYSVAVLNVSDSPIAEGIELLEP
Ga0070671_1000834271	3300005355	Switchgrass Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMAAGIELIEPQLLMLGDQALVLRGYERLKDDEGAFTV
Ga0070671_1006335942	3300005355	Switchgrass Rhizosphere	MKWRVRLMRKAGRRIPWKALINEPGLIGTIRTHSCTYGDQEPYSVAVLNVSDSPIAE
Ga0070671_1009878331	3300005355	Switchgrass Rhizosphere	VRFVAEAGRRIPWKTLIDEPGLIGTIRTHSCIYGDQEAYDVAVLNVSDSPIAEGIELIEP
Ga0070674_1008337762	3300005356	Miscanthus Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQL
Ga0070673_1008400222	3300005364	Switchgrass Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQAL
Ga0070673_1019575421	3300005364	Switchgrass Rhizosphere	LINEPGQVGTIRTHSCVYGDQEPYTVAVLNVSYSPIAEGIELLEPQLLMLGDRALILRE*
Ga0070673_1020672222	3300005364	Switchgrass Rhizosphere	MKWRVRFRRKAGRRIPWKVLINEPGLVGTIRTHSCTYGDQEPYSVAVLNVSDSPIAEGIELLEPER*
Ga0070667_1013809281	3300005367	Switchgrass Rhizosphere	MKWRVRLMRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQALVLRGYERL
Ga0070662_1014645482	3300005457	Corn Rhizosphere	MRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIEL
Ga0068867_1001362171	3300005459	Miscanthus Rhizosphere	MASAFYAEAGRRIPCRVLINEPGLIGSIRIHPRTYGDKVPSIVAVPNVSDSPIAERIELL
Ga0068867_1004209891	3300005459	Miscanthus Rhizosphere	SMGVAMKWRVRFMRKAGRRISWKILVNEPGLIGTIRTHSCTYGNQEPYNVAVLNVSDSRPRGSSS*
Ga0068853_1012186082	3300005539	Corn Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMAAGIELIEPQLLMLGDQALVLRGYERLKDDEGAFTVL
Ga0070672_1017615642	3300005543	Miscanthus Rhizosphere	GRRIPWKTLIDEPGLIGTIRTHSCTYGDQEAYDVAVLNVSDSPIAEGIELIEL*
Ga0070672_1020716561	3300005543	Miscanthus Rhizosphere	MWKAGRIPWKTLINEPGLIGTIRTHSCTYGGQSPYSVAVLHVSDSPIAEGREL
Ga0070704_1005060211	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VLLLRKAGRRIPWEILINEPGLIGRIRTHSCTYGDQKPYDVAVLNVSDSPIAGGIELLEPQLLMLGDQA
Ga0068857_1009229832	3300005577	Corn Rhizosphere	MKWRMRLMRKAGRRIPWKNLINEPGLIGTIRTRSCTYGDQEPYSVAVLNVSDSPIAEGIELLEPRLLMLGDQADTARL*
Ga0068857_1009424312	3300005577	Corn Rhizosphere	MASAFYAEAGRRVPWKVLINGPGLIGSIRIHPCTYGDKVPSIVAVPNVSDSPIAEGKELLEPQLL
Ga0068864_1010119002	3300005618	Switchgrass Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYPVAVLRGESPMSAGIELIEPQLLMLGDQALVLRGYE
Ga0068864_1017641912	3300005618	Switchgrass Rhizosphere	KWRVRLMRKAGRRIPWKILINELELVGTIRTRSCNYGGQAPYSVAVLHASDSPIEEGIELREPQLLMLGGQALILRGYERLQND*
Ga0068861_1025745142	3300005719	Switchgrass Rhizosphere	MKWRVRLMRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQALVLRGYE
Ga0068870_103412201	3300005840	Miscanthus Rhizosphere	MRKAGRRIPWKILINEPGQVGTIRTHSCTYGDQEPYSVAVLRASDSPIEEGIELLEPQLLMLGDQALILRGYERL
Ga0068870_110103772	3300005840	Miscanthus Rhizosphere	MRKAGRRIPWETLVNEPGLVGTIRTHSCNYGSQGPYTVAVLRGESPTAAGIELIEPQLLMLGDQALVLRGYERLK
Ga0068863_1007484661	3300005841	Switchgrass Rhizosphere	MRKAGRRVPWRILINEPGLIGTIRTHSCTYGDQEPYNVAVLNVSDSPIA
Ga0068858_1025809011	3300005842	Switchgrass Rhizosphere	MKWRVRLMRKAGRRIPWKILINEPGLVGTIRTHSCTYGDQEPYSVAVLNVSDSPIAEGIELLEPKLLMLSDQAANTARLRASAKR*
Ga0068860_1005229421	3300005843	Switchgrass Rhizosphere	MRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELI
Ga0068860_1016646212	3300005843	Switchgrass Rhizosphere	MRKAGRRISWKILVNEPGLIGTIRTHSCTYGNQEPYNVAVLNVSDSRPRGSSS*
Ga0097621_1008860602	3300006237	Miscanthus Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLM
Ga0075429_1015542882	3300006880	Populus Rhizosphere	MQHVGKIRWRVLLLRKAGRRIPWEILINEPGLIGRIRTHSCTYSDQKPYDVAVLNVSDSPIAGGIELLEPQLLMLGDQALI
Ga0075419_113462151	3300006969	Populus Rhizosphere	MKWRVRFMRKAGRRVPWRILINEPGLIGTIRTHSCTYADQEPYNVAVLNVSDSPIAEGIELLVM
Ga0105245_109201801	3300009098	Miscanthus Rhizosphere	MKWRVRLMRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLL
Ga0111538_134588132	3300009156	Populus Rhizosphere	MRKAGRRILWKILINEPGLIGTLRTHVWNYGNQGPYKVAVLIGNSTVALGIEL
Ga0105248_106066792	3300009177	Switchgrass Rhizosphere	MKWRVRLMRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMAAGIELIEPQLLMLGDQAL
Ga0105249_111713601	3300009553	Switchgrass Rhizosphere	MKWRVRLMRKAGRRIPWQILVYEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDHC
Ga0105246_125132451	3300011119	Miscanthus Rhizosphere	MKWRVRLMRKAGRRIPWESLVNEPGLVGTIRTHSCNYGSQGPYTVAVLRGESPTAAGIELIEPQLLMLGDQA
Ga0157299_102883481	3300012899	Soil	MKWRVRLMRKAGRRIPWETLVNEPGLVGTIRTHSCNYGSQGPYTVAVLRGESPTAAGIELIE
Ga0157283_102526111	3300012907	Soil	MMKWRLRLMRKAGRRIPWKALINEPGLIGTIRTHSCTYGDQEPYGVAVLNVSDSPIAGGIELLEPQLLMLGDQALILRGYEQLQNDDGPF
Ga0157297_105356791	3300012914	Soil	IRTHSCTYGDQKPYDVAVLNVSDSPIAGGIELLEPQLLMLGDQALILRGYEQLQNDD*
Ga0157310_100150201	3300012916	Soil	MQHVGKIRWRVLLLRKAGRRIPWEILINEPGLIGRIRTHSCTYGDQKPYDVAVLNVSDSPIAGGIELLEPQLLMLGDQALILR
Ga0157374_116296261	3300013296	Miscanthus Rhizosphere	MKWRVRFMRKAGHRIPWKVLINEPDLIGTIRTHSCTYGDKGPYNVAVLNVSVSAIAEGIELLKPRLLMLGDQALIL
Ga0157374_116925551	3300013296	Miscanthus Rhizosphere	MKWRVRFMRKAGRRVPWRILINEPGLIGTIRTHSCTYGDQEPYNVAVLNVSDSPIAEGIEPLEPQLL
Ga0157378_103401022	3300013297	Miscanthus Rhizosphere	MKWRVRLMRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQALVLRGYER
Ga0157378_107762412	3300013297	Miscanthus Rhizosphere	MKWRVRLMRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQALVLRGYER
Ga0157378_117372702	3300013297	Miscanthus Rhizosphere	MRKSGRRIPWKVLINEPGLIGTIRTHACTYGDQEPYNVAVLNVSDSPIAEGTELLEPQLLMLGDQALILRGYE
Ga0163162_112236572	3300013306	Switchgrass Rhizosphere	MKWRVRLMRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQAL
Ga0163162_122288292	3300013306	Switchgrass Rhizosphere	MMKWRMRLMRKAGRRIPWKNLINEPGLIGTIRTRSCTYGDQEPYSVAVLNVSDSPIAEGIELLEPRLLMLGDQADTARL*
Ga0163162_126761162	3300013306	Switchgrass Rhizosphere	MRKAGRRIPWKVLINEPGLVGTIRTHSCTYGDQEPYNVAVLNVSDSPIAEGIELLE
Ga0163163_103445782	3300014325	Switchgrass Rhizosphere	MKWRVRLMRKAGRRIPWKVLINEPGLIGTIRTHSCTYGDQEPYSVAVLNVSDSPIAEGIELLEPQLLMLGD
Ga0157380_103175711	3300014326	Switchgrass Rhizosphere	MKWRVRLMRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAG
Ga0157376_102698011	3300014969	Miscanthus Rhizosphere	MKWRVRLMRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQALVLR
Ga0157376_116221001	3300014969	Miscanthus Rhizosphere	MKWRMRLMRKAGRRIPWKNLINEPGLIGTIRTRSCTYGDQEPYSVAVLNVSDSPIAEGIELLEPRLLMLGDQADT
Ga0157376_120562521	3300014969	Miscanthus Rhizosphere	MRKAGRRIPWKVLINEPGLVGTIRTHSCTYGDQEPYNVAVLNVSDSPIAEGIELL
Ga0157376_123465171	3300014969	Miscanthus Rhizosphere	RIPWKILINEPGLIGTIRTHSCTYGDQEPYNVAVLNVSDSPFAEGVELLEPQLLMLGGQALILRGYPRERMRA*
Ga0132255_1016516422	3300015374	Arabidopsis Rhizosphere	MKWRVRLMRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMAAGLELIEPQLLMLGDQALVLRGYERLKDDE
Ga0184624_101366552	3300018073	Groundwater Sediment	MQHVGKIRWRVLLLRKAGRRIPWEILINEPGLIGRIRTHSCTYSDQKPYDVAVLNVSDSPIAGGIELLEPQLLMLGDQALILRGYEQLQ
Ga0184628_100545322	3300018083	Groundwater Sediment	MRTAGRRIPFKILINEPGLIGTIRTHSCNYGDQEPYSVAVLNISDSPIAEGIELLEPQLLMLG
Ga0184628_100595652	3300018083	Groundwater Sediment	VRFVAEAGRRIPWKTLIDEPGLIGTIRTHSCTYGDQEAYDVAVLNVSDSPIAEGIELIEL
Ga0190274_103677592	3300018476	Soil	MRKAGRLIPWRALINEPGLIGTIRTHSCTYGNQEPYSVAVLRASDSPIEERIELLEPQLLDTGDQALILRG
Ga0190274_111045002	3300018476	Soil	MKWRVRLMRKAGRRIPWETLVNEPGLVGTIRTHSCNYGSQGPYTVAVLRGESPTAAGIELIEPQLLMLG
Ga0190274_122647381	3300018476	Soil	FLQYSGHNEMASAFFAETGRRIPWKTLINEPGLIGTIRTHSCTYGDQEAYDVAVLNVNDSPIAEGIELIEL
Ga0190274_126704762	3300018476	Soil	MRLMRKAGRRIPWKNLINEPGLIGTIRTRSCTYGDQEPYSVAVLNVSDSPIAEGIELFEPQLLMLGGQRNKNPACAGFV
Ga0222622_100157796	3300022756	Groundwater Sediment	MKWRMRLMRKAGRRIPWKNLINEPGLIGTIRTRSCTYGDQEPYSVAVLNVSDSPIAEGIELLEPRLLMLGDQADTARL
Ga0247743_10178572	3300023067	Soil	MRKAGRRIPWETLVNEPGLVGTIRTHSCNYGSQGPYTVAVLRGESPTAAGIELIEPQLL
Ga0247800_10260912	3300023263	Soil	MRKAGRRIPWETLVNEPGLVGTIRTHSCNYGSQGPYTVAVLRGESPTAAGIELIEPQLLMLGDQALVL
Ga0207682_104224371	3300025893	Miscanthus Rhizosphere	MQHVGKIRWRVLLLRKAGRRIPWEILINEPGLIGRIRTHSCTYGDQKPYDVAVLNVSDSPIAGGIELLEPQLLMLGDQALILRGYEQ
Ga0207642_100695911	3300025899	Miscanthus Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQALVLRGYERLKDDEG
Ga0207688_100120148	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQALVLRGYE
Ga0207643_102901651	3300025908	Miscanthus Rhizosphere	MRKAGRRIPWKILINEPGLIGTIRTHSCTYGEQEPYSVAVLNVSDSPIA
Ga0207681_103105501	3300025923	Switchgrass Rhizosphere	MRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQALVLR
Ga0207650_102839581	3300025925	Switchgrass Rhizosphere	MRKAGRRIPWKILINELELVGTIRTRSCNYGGQAPYSVAVLHASDSPIEEGIELREPQLLMLGGQALILRGYERLQND
Ga0207650_113129892	3300025925	Switchgrass Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDHCHGLLNETVY
Ga0207659_112335822	3300025926	Miscanthus Rhizosphere	MRFVAEAGRRIPWKTLIDEPGLIGTIRTHSCTYGDQEAYDVAVLNVSDSPIAEGIELIEL
Ga0207659_116667341	3300025926	Miscanthus Rhizosphere	MKWRVRFMRKAGRRIPWKILVNEPGLIGTIRTHSCTYGDQEPYSVAVLNVSDNPI
Ga0207691_106956062	3300025940	Miscanthus Rhizosphere	MKWRVRLMRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQA
Ga0207691_113928442	3300025940	Miscanthus Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQA
Ga0207651_107488911	3300025960	Switchgrass Rhizosphere	MRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMAAGIELIEPQLLMLGDQALVLR
Ga0207712_102198843	3300025961	Switchgrass Rhizosphere	MRKAGRRIPWQILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDHC
Ga0207658_112624191	3300025986	Switchgrass Rhizosphere	MRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLMLGDQALVLRGYER
Ga0207658_115919751	3300025986	Switchgrass Rhizosphere	MRKTGRRIPWKILVNEPGLIGTIRTHSCTYGDQEPYSVAVLNVSDNPIAEGIELLE
Ga0207708_109264121	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRKAGRRISWKILVNEPGLIGTIRTHSCTYGNQEPYNVAVLNVSDSRPRGSSS
Ga0207676_110781571	3300026095	Switchgrass Rhizosphere	MRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQ
Ga0207676_110897571	3300026095	Switchgrass Rhizosphere	MKWRVRLMRKAGRRIPWKALINEPGLIGTIRTHSCTYGDQEPYSVAVLNVSDSPIAEGIELLEPQLLMLGDQ
Ga0207676_114119151	3300026095	Switchgrass Rhizosphere	RLMRKAGRRIPWKILINELELVGTIRTRSCNYGGQAPYSVAVLHASDSPIEEGIELREPQLLMLGGQALILRGYERLQND
Ga0207683_100300841	3300026121	Miscanthus Rhizosphere	MRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIELIEPQLLM
Ga0209481_104974932	3300027880	Populus Rhizosphere	MRRAGRRIPWKTLIDELGLVGTIRTHSSTYGDQEPYNVAVLNASDSPIAKEMELF
Ga0268264_126573922	3300028381	Switchgrass Rhizosphere	MKWRVRLMRKAGRRIPWEILVNEPGLIGTIRTHSCNYGSQGPYTVAVLRGESPMSAGIEL
Ga0247828_112327621	3300028587	Soil	MRKAGRRIPWETLVNEPGLVGTIRTHSCNYGSQGPYTVAVLRGESPTAAGIELIEPQLLMLGDQALV
Ga0311360_110884622	3300030339	Bog	MRKAGRRIPWKILVNEPGLVGTIRTHYCSYRDQERYKVAALMGDSPIAAGIELIEPQLVQLGDQ
Ga0310899_102802221	3300032017	Soil	MRKVGRRIPWKVLINEPGLVGTIRTHSCIYGDQEPYNVAVLNVSDSPIAEGIELLEPQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094024

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences