Metagenome / Metatranscriptome Family F094022

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094022
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	68 residues
Representative Sequence	MTESISSDRQDAKDDLREAGDDASRAADRTGDKLGDAAEHAKDGAEKVGHKVSDAIEDVIPGDSDGDGH
Number of Associated Samples	62
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	57.55 %
% of genes near scaffold ends (potentially truncated)	45.28 %
% of genes from short scaffolds (< 2000 bps)	99.06 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.642 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (36.792 % of family members)
Environment Ontology (ENVO)	Unclassified (43.396 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.774 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.67% β-sheet: 0.00% Coil/Unstructured: 44.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02597	ThiS	15.09
PF01594	AI-2E_transport	12.26
PF05974	DUF892	11.32
PF05552	TM_helix	8.49
PF01544	CorA	6.60
PF09954	DUF2188	0.94
PF05957	DUF883	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	15.09
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	15.09
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	12.26
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	11.32
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	8.49
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	8.49
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	6.60
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.64 %
Unclassified	root	N/A	27.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.64 %
Unclassified	root	N/A	27.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.64 %
Unclassified	root	N/A	27.36 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	34.91 %
Unclassified	root	N/A	27.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.09 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	33.96 %
Unclassified	root	N/A	27.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.36 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.92 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	2.83 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.94 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.36 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	16.98 %
Sterolibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae	2.83 %
Halieaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae	0.94 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.94 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.36 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	16.98 %
Methyloversatilis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis	2.83 %
Congregibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Congregibacter	0.94 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.94 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.36 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	16.98 %
Methyloversatilis universalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → Methyloversatilis universalis	2.83 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.94 %
Roseomonas arctica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas arctica	0.94 %
Congregibacter litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Congregibacter → Congregibacter litoralis	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.36 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	16.98 %
Methyloversatilis universalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → Methyloversatilis universalis	2.83 %
Novosphingobium sp. CF614	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. CF614	0.94 %
Roseomonas arctica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas arctica	0.94 %
Congregibacter litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Congregibacter → Congregibacter litoralis	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_101648539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2242	Open in IMG/M
3300000956\|JGI10216J12902_108844311	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300004114\|Ga0062593_102996555	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300005093\|Ga0062594_101408685	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300005337\|Ga0070682_102014907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → Methyloversatilis universalis	508	Open in IMG/M
3300005338\|Ga0068868_102227881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → Methyloversatilis universalis	522	Open in IMG/M
3300005347\|Ga0070668_100617114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	950	Open in IMG/M
3300005347\|Ga0070668_101599442	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300005355\|Ga0070671_100587849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	962	Open in IMG/M
3300005356\|Ga0070674_100830692	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300005455\|Ga0070663_101948043	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300005456\|Ga0070678_100403704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1188	Open in IMG/M
3300005456\|Ga0070678_102195873	Not Available	523	Open in IMG/M
3300005456\|Ga0070678_102241914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Congregibacter → Congregibacter litoralis	518	Open in IMG/M
3300005459\|Ga0068867_101134917	All Organisms → cellular organisms → Bacteria → Proteobacteria	715	Open in IMG/M
3300005543\|Ga0070672_101879966	Not Available	539	Open in IMG/M
3300005548\|Ga0070665_100679045	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300005548\|Ga0070665_100996585	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300005548\|Ga0070665_101893957	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300005548\|Ga0070665_102332495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	538	Open in IMG/M
3300005564\|Ga0070664_101596743	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300005578\|Ga0068854_102009477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Methyloversatilis → Methyloversatilis universalis	533	Open in IMG/M
3300006237\|Ga0097621_101090761	All Organisms → cellular organisms → Bacteria → Proteobacteria	749	Open in IMG/M
3300006358\|Ga0068871_100963646	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300006358\|Ga0068871_101131505	All Organisms → cellular organisms → Bacteria → Proteobacteria	733	Open in IMG/M
3300006881\|Ga0068865_101763644	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300009101\|Ga0105247_10938112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	671	Open in IMG/M
3300009177\|Ga0105248_11744865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	706	Open in IMG/M
3300009840\|Ga0126313_11295083	Not Available	602	Open in IMG/M
3300010110\|Ga0126316_1093449	Not Available	623	Open in IMG/M
3300010147\|Ga0126319_1519380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	809	Open in IMG/M
3300010154\|Ga0127503_10521834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	927	Open in IMG/M
3300010154\|Ga0127503_10929792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1151	Open in IMG/M
3300010154\|Ga0127503_11250007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	851	Open in IMG/M
3300010154\|Ga0127503_11264968	Not Available	532	Open in IMG/M
3300012212\|Ga0150985_105372677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	893	Open in IMG/M
3300012212\|Ga0150985_120942264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	919	Open in IMG/M
3300012469\|Ga0150984_103568854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
3300012469\|Ga0150984_113864481	All Organisms → cellular organisms → Bacteria → Proteobacteria	991	Open in IMG/M
3300012469\|Ga0150984_114210165	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300012903\|Ga0157289_10078092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	902	Open in IMG/M
3300012958\|Ga0164299_10389895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	891	Open in IMG/M
3300012984\|Ga0164309_11158617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	646	Open in IMG/M
3300012985\|Ga0164308_11802669	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300013308\|Ga0157375_11208787	Not Available	887	Open in IMG/M
3300014326\|Ga0157380_10502109	Not Available	1178	Open in IMG/M
3300014326\|Ga0157380_10692505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1023	Open in IMG/M
3300014326\|Ga0157380_12720254	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300014326\|Ga0157380_13099906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. CF614	530	Open in IMG/M
3300014326\|Ga0157380_13356526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300014968\|Ga0157379_10899716	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300014969\|Ga0157376_10643571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1060	Open in IMG/M
3300015371\|Ga0132258_13473793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1080	Open in IMG/M
3300015372\|Ga0132256_103805761	Not Available	507	Open in IMG/M
3300015373\|Ga0132257_103158904	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300017965\|Ga0190266_10302928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	834	Open in IMG/M
3300017965\|Ga0190266_10758302	Not Available	616	Open in IMG/M
3300017965\|Ga0190266_10826077	Not Available	598	Open in IMG/M
3300018073\|Ga0184624_10182766	Not Available	931	Open in IMG/M
3300018476\|Ga0190274_10549749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1168	Open in IMG/M
3300018476\|Ga0190274_11992723	Not Available	677	Open in IMG/M
3300018476\|Ga0190274_12186282	Not Available	650	Open in IMG/M
3300018476\|Ga0190274_12860954	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300019263\|Ga0184647_1496674	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300019361\|Ga0173482_10413961	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300019361\|Ga0173482_10581773	Not Available	559	Open in IMG/M
3300022906\|Ga0247766_1096470	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300023097\|Ga0247757_10080206	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300025899\|Ga0207642_10422909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	802	Open in IMG/M
3300025927\|Ga0207687_10673296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	876	Open in IMG/M
3300025931\|Ga0207644_11510990	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300025935\|Ga0207709_10917471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	713	Open in IMG/M
3300025938\|Ga0207704_10714535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	831	Open in IMG/M
3300026075\|Ga0207708_11340442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas arctica	627	Open in IMG/M
3300028379\|Ga0268266_10778217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	924	Open in IMG/M
3300028379\|Ga0268266_11046943	Not Available	790	Open in IMG/M
3300028379\|Ga0268266_11560842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
3300028379\|Ga0268266_11622994	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300030902\|Ga0308202_1090315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	620	Open in IMG/M
3300030902\|Ga0308202_1165445	Not Available	500	Open in IMG/M
3300030905\|Ga0308200_1026629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	964	Open in IMG/M
3300030905\|Ga0308200_1110063	Not Available	597	Open in IMG/M
3300030905\|Ga0308200_1114901	Not Available	588	Open in IMG/M
3300030993\|Ga0308190_1031609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	936	Open in IMG/M
3300031058\|Ga0308189_10160076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	781	Open in IMG/M
3300031058\|Ga0308189_10180946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	749	Open in IMG/M
3300031058\|Ga0308189_10257780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	662	Open in IMG/M
3300031058\|Ga0308189_10270964	Not Available	650	Open in IMG/M
3300031058\|Ga0308189_10288516	All Organisms → cellular organisms → Bacteria → Terrabacteria group	636	Open in IMG/M
3300031058\|Ga0308189_10297351	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300031058\|Ga0308189_10413029	Not Available	561	Open in IMG/M
3300031058\|Ga0308189_10529920	Not Available	511	Open in IMG/M
3300031091\|Ga0308201_10143463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300031091\|Ga0308201_10157821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	716	Open in IMG/M
3300031091\|Ga0308201_10195060	Not Available	666	Open in IMG/M
3300031091\|Ga0308201_10402732	Not Available	515	Open in IMG/M
3300031091\|Ga0308201_10416705	Not Available	508	Open in IMG/M
3300031092\|Ga0308204_10185048	Not Available	640	Open in IMG/M
3300031092\|Ga0308204_10212747	Not Available	609	Open in IMG/M
3300031093\|Ga0308197_10431471	Not Available	523	Open in IMG/M
3300031093\|Ga0308197_10461271	Not Available	512	Open in IMG/M
3300031093\|Ga0308197_10486514	Not Available	503	Open in IMG/M
3300031123\|Ga0308195_1015701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	882	Open in IMG/M
3300031421\|Ga0308194_10177937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	674	Open in IMG/M
3300031902\|Ga0302322_100362552	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300032174\|Ga0307470_11174170	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.72%
Host-Associated	Host-Associated	45.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.17%
Plants	Host-Associated → Plants	45.28%
Aquatic	Environmental → Aquatic	7.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.26%
Freshwater	Environmental → Aquatic → Freshwater	6.60%
Roots	Host-Associated → Plants → Roots	2.83%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.89%
Sediment	Environmental → Aquatic → Sediment	0.94%
Peat	Environmental → Terrestrial → Peat	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.32%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	5.66%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.77%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.83%
Loam	Environmental → Terrestrial → Soil → Loam	1.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.32%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	36.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	11.32%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	5.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	5.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010110	Soil microbial communities from Illinois, USA to study soil gas exchange rates - BV-IL-AGR metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022906	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L223-509R-6	Environmental	Open in IMG/M
3300023097	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L126-311R-4	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1016485392	3300000956	Soil	MTESIPSDRRTDVDDDLREAGDDASRAAERAGDKVGDAAEKVKDGAASMGNRVSDAVEDMIPGDSDQDGH*
JGI10216J12902_1088443111	3300000956	Soil	MTESIPSDRRTDVDDDLREAGDDLSRAADRAGDKVGDAAEKAKDGASSVGSKVSDAVEDMIPGDSDRDGH*
Ga0062593_1029965551	3300004114	Soil	MTESISSDRQDAKDDLREAGDDASRAADRTGDKLGDAAEHAKDGAEKVGHKLSDAIEEVI
Ga0062594_1014086852	3300005093	Soil	QLMTDSIPSDRRTDVDDDLREAGDDASRAADRAGDKVGDAAEKAKDGASSVGHKVSDAVEDMIPGDSDRDGH*
Ga0070682_1020149071	3300005337	Corn Rhizosphere	MTESISSDRQDTKDDLHEAGEDVSRAADRTGDKLGDAAEHAKDGAEKVGHKVSDAIEDVIPGDSDGDGH*
Ga0068868_1022278811	3300005338	Miscanthus Rhizosphere	MTESTAADRQDAKDDLHEAGDEAARAADRTGDKIGDAAEHAKDGAQKVGHKLSDAIEDVIPGDSDGDSH*
Ga0070668_1006171141	3300005347	Switchgrass Rhizosphere	DDLDEAGDDAARAADRAGDKVGDAADRAKDGAQDVGHKVSDAIEDVIPGDSDGDGH*
Ga0070668_1015994422	3300005347	Switchgrass Rhizosphere	ARDDLDDAGDEAARAADRAGDKVGDAADRAKDGAQNVGHKVSDAIEDVIPGDSDGDGH*
Ga0070671_1005878492	3300005355	Switchgrass Rhizosphere	MTESISSERQDAKDDLHEAGDDVSRAADRTGDKLGDAAESVKDDAEKVGHKLSDAIEDVIPGDSDGDGH*
Ga0070674_1008306922	3300005356	Miscanthus Rhizosphere	MTESISSDRQDAKDDLREAGDDASRAADRTGDKLGDAAEHAKDGAEKVGHKVSDAIEDVIPGDSDGDGH*
Ga0070663_1019480432	3300005455	Corn Rhizosphere	MTESIPSDRRTDVDDDLREASDDMSRAADRAGDKVGDAAEKAKDGASSVGHKVSDAVEDMIPGDSDRDGH*
Ga0070678_1004037041	3300005456	Miscanthus Rhizosphere	MTESISSDRQDAKDDLHEAGDDVSRAADRTGDKLGDAAEHAKDGAEKAGHKLSDAIEDVIPGDSDGDGH*
Ga0070678_1021958731	3300005456	Miscanthus Rhizosphere	MEDATQTRTEDDLRDAKDDAARAADRAGDKVGDAAERAKDDASSVGNKVSDAIEDMIPGDSDKDGH*
Ga0070678_1022419141	3300005456	Miscanthus Rhizosphere	MTESIPSDRRTDADDDLREASDDMSRAADRAGDKVGDAAEKAKDGASSVGHKVSDAVEDMIPGDSDRDGH*
Ga0068867_1011349172	3300005459	Miscanthus Rhizosphere	DDLRDAKDDAARAADRAGDKVGDAAERAKDDASSVGNKVSDAIEDMIPGDSDKDGH*
Ga0070672_1018799662	3300005543	Miscanthus Rhizosphere	GCGYEALLRRKEKLMSESTYSNREDARDDLDDAGDEAARAADRAGDKVGDAADRAKDGAQNVGHKVSDAIEDVIPGDSDGDGH*
Ga0070665_1006790452	3300005548	Switchgrass Rhizosphere	MTESISTDRQEAKEDLHEAGDDVSRAADRTGDKLGDAAEHAKDGAEKVGHKVSDAIEDVIPGDSDGDGH*
Ga0070665_1009965852	3300005548	Switchgrass Rhizosphere	MTESISSEHQDTTDELREAGDDASRAADRTGDKLGDAADRAKDGAEKVGDKLSDAVEDVIPGDSDGDGH*
Ga0070665_1018939572	3300005548	Switchgrass Rhizosphere	DDLHEAGDEAARAADRTGDKIGDAAEHAKDGAQKVGHKLSDAIEDVIPGDSDGDSH*
Ga0070665_1023324952	3300005548	Switchgrass Rhizosphere	MTESIPSDRRTGVDDDLREAGDDMSRAADRAGDKIGDAAEKAKDGASSVGHKVSDAVEDMIPGDSDRDGH*
Ga0070664_1015967431	3300005564	Corn Rhizosphere	MTESISSEHQDTTDELREAGDDASRAADRTGDKLGDAADRAKDGAEKVGHKLSDAVEDVIPGDSDGDGH*
Ga0068854_1020094771	3300005578	Corn Rhizosphere	MTESISSDRQDARDDLHEAGDDVSRAADRTGDKLGDAAEHAKDGAEKVGHKVSDAIEDVIPGDSDGDGH*
Ga0097621_1010907611	3300006237	Miscanthus Rhizosphere	MENATQTRTEDDLRDAKDDAARAADRAGDKVGDAAERAKDDASSVGNKVSDAIEDMIPGDSDKDGH*
Ga0068871_1009636463	3300006358	Miscanthus Rhizosphere	MTESTAADRQDAKDDLHEAGDEAARAADRTGDKIGDAAEHAKDGAQKVGHKLSDAIEDVIPGDSDGD
Ga0068871_1011315052	3300006358	Miscanthus Rhizosphere	DATQTRTEDDLRDAKDDAARAADRAGDKVGDAAERAKDDADSVGHKVSDAIEDMIPGDSDKDGH*
Ga0068865_1017636442	3300006881	Miscanthus Rhizosphere	TYSNREDARDDLDDAGDEAARAADRAGDKVGDAADRAKDGAQNVGHKVSDAIEDVIPGDSDGDGH*
Ga0105247_109381121	3300009101	Switchgrass Rhizosphere	MTETTSTNRTDDDLQDAGDEASRAADRAADKAGDMAHEAKEDASKVGHKLSDAIEDVIPGDSDGDGH*
Ga0105248_117448651	3300009177	Switchgrass Rhizosphere	QTRTEDDLRDAKDDAARAADRAGDKVGDAAERAKDDASSVGNKVSDAIEDMIPGDSDKDGH*
Ga0126313_112950831	3300009840	Serpentine Soil	MTEGISTDRQDVRDDLDDAGDDAARAADRTGDKMGDAADRAKDGAERVGNKMSDAIENVIPGDSDGDGH*
Ga0126316_10934492	3300010110	Soil	EKLMSESTYSNREDARDDLDDAGDEAARAADRAGDKVGDAADRAKDGAQNVGHKVSDAIEDVIPGDSDGDGH*
Ga0126319_15193801	3300010147	Soil	KGAVMTESISSDRQDAKDDLREAGDDAARAADRTGDKIGDAAEHAKEGAEKVGHKLSDAIENVIPGDSDGDGH*
Ga0127503_105218341	3300010154	Soil	MTESIQSDRRNDADDDLREAREDVSRAADRAGDKVEDAAKKAKDEAAGAGHKVSDAIEDMIPGDSDHDGH*
Ga0127503_109297922	3300010154	Soil	MTESISSDRKDAKDDLREAGDDAARAADRTGDKIGDAADHAKEGAEKVGHKLSDAIEDVIPGDSDGDGH*
Ga0127503_112500072	3300010154	Soil	VVMTESISSDRQDAKDDLHEAGDDAARAADRTGDKIGDAAEHAKDGAEKVGHKLADAIEDVIPGDSDGDGH*
Ga0127503_112649682	3300010154	Soil	LEPRRNLMGESDRTSTTTRADDDLRDAGDDVSRAADRTADKVGDAAGDAKDAAKSAGHKLSDAVEDMIPGDSDRDGH*
Ga0150985_1053726771	3300012212	Avena Fatua Rhizosphere	ISSDRQDAKDDLHEAGDDAARAADRTGDKLGDAAEHAKDGAEKVGHKLSDPIEDVIPGDSDGDGH*
Ga0150985_1209422642	3300012212	Avena Fatua Rhizosphere	MTESIPSDRRTDVDDDLREAGDDMSRAADRAGDKVGDAAEKAKDGASSVGHKVSDAVEDMIPGDSDRDGH*
Ga0150984_1035688541	3300012469	Avena Fatua Rhizosphere	KGAVMTESIPSDRQDAKDDLHEAGDDASRAADRTGDKLGDAAEHAKDGAENVGHKVSDAIEDVIPGDSDADGH*
Ga0150984_1138644812	3300012469	Avena Fatua Rhizosphere	MTESISSDRQDAKDDLHEAGDDAARAADRTGDKLGDAAEHAKDGAEKVGHKLSDPIEDVIPGDSDGDGH*
Ga0150984_1142101651	3300012469	Avena Fatua Rhizosphere	AVMTESISSDRQDAKDDLHEAGDDVSRAADRTGDKLGDAAEHAKDGAEKVGHKVSDAIEDVIPGDSDGDGH*
Ga0157289_100780921	3300012903	Soil	MSESTYSNREDARDDLDDAGDEAARAADRAGDKVGDAADRAKDGAQNVGHKVSDAIEDVIPGDSDGDGH*
Ga0164299_103898952	3300012958	Soil	MTESISSDRRDAKDDLHEAGDEASRAADRTGDKLGDAAESVKDDAEKVGHKLSDAIEDVIPGDSDGDGH*
Ga0164309_111586171	3300012984	Soil	MEDATQTRTEDDLRDAKDDAARAADRAGDKVGDAAERAKDDAGSVGHKVSDAIEDMIPGDSDKDGH*
Ga0164308_118026692	3300012985	Soil	MTESTAADRQDAKDDLHEAGDEAARAADRTGDKIGDAAEHAKDGAQKVGHKLSDAIEDVIPGDSDGDGH*
Ga0157375_112087872	3300013308	Miscanthus Rhizosphere	ACGCGYEALLRRKEKLMSESTYSNREDARDDLDDAGDEAARAADRAGDKVGDAADRAKDGAQNVGHKVSDAIEDVIPGDSDGDGN*
Ga0157380_105021092	3300014326	Switchgrass Rhizosphere	MGNEVRTTGTTDVDDDLRDAKDDAARAADRAGDKVGNAAERTKDAASDAGHKISDAVEDMIPGDSDGDGH*
Ga0157380_106925053	3300014326	Switchgrass Rhizosphere	MTESISSDRQDAKDDLHEAGDDVSRAADRTGDKLGDAAEHAKDGAEKVGHKVSDAIEDVIPGDSDGDGH*
Ga0157380_127202541	3300014326	Switchgrass Rhizosphere	DDLHEAGDDVSRTADRTGDKLGDAAEHAKDGAEKVGHKLSDAIEEVIPGDSDGDGH*
Ga0157380_130999061	3300014326	Switchgrass Rhizosphere	MTESDRTTTARAEDELRDAGEDTARAGDRAADKVGDAADDAKDAAKSAGHKLSDAVEDMIPGDSDGDGH*
Ga0157380_133565262	3300014326	Switchgrass Rhizosphere	DVDDDLREAGDDMSRAADRAGDKVGDAAEKAKDGASSVGHKVSDAVEDMIPGDSDRDGH*
Ga0157379_108997161	3300014968	Switchgrass Rhizosphere	MTESISSDRQDAKDDLHEAGDDAARAADRTGDKLGDAAEHAKDGAEKVGHKLADAIEDVIPGDSDGDGH*
Ga0157376_106435711	3300014969	Miscanthus Rhizosphere	MEDATQTRTEDDLRDAKDDAARAADRAGGKVGDAAERAKDDAGSVGHKVSDAIEDMIPGDSDKDGH*
Ga0132258_134737931	3300015371	Arabidopsis Rhizosphere	MEDSTQTRTEDDLRDAKDDAARAADRAGDEGGDAAKRAKDDAASVGHKVSDAIEDVIPGDSDNDGH*
Ga0132256_1038057611	3300015372	Arabidopsis Rhizosphere	MEDATQTRTEDDLRDAKDDAARAADRAGDKVGDAAERAKDDAGSFGHKVSDAIEDMIPGYSDKDGH*
Ga0132257_1031589042	3300015373	Arabidopsis Rhizosphere	MTESTAADRQDAKDDLHEAGDEAARAADRTGDKSGDAAEHAKDGAQKVGHKLSDAIEDVIPGDSDGDSH*
Ga0190266_103029283	3300017965	Soil	MTESISSDRQDAKDDLREAGDDAARAADRTGDKIGDAAEHAKDGAEKVGHKVSDAIEDVIPGDSDGDGH
Ga0190266_107583022	3300017965	Soil	MGDSERTPSTTRTDDELREAGDDFSRAADRTADKVGDAAGDAKDAAKSAGHKLSDAVEDMIPGDSDADGH
Ga0190266_108260772	3300017965	Soil	MTESISSDRQDVRDDLDEAGDDVARAADRAGDKVGDAAEDAKDGAQKVGDKLSDAIEYVIPGDSDGDGH
Ga0184624_101827662	3300018073	Groundwater Sediment	MSESTYSNREDAKSDLDEAGDDAARAADRAGDKVGDAADRAKDGAQNVGHKVSDAIEDVIPGDSDGDGH
Ga0190274_105497491	3300018476	Soil	EAGDDVARAADRAGDKVGDAAEDAKDGAQKVGDKLSDAIEDVIPGDSDGDGH
Ga0190274_119927232	3300018476	Soil	MSESTPVERRGDVDDDLREAGDDVSEAAGRAGNKVEDAAENAKDGAQSVGRKVSDAIEDVIPGDSDRDGH
Ga0190274_121862822	3300018476	Soil	MSSEPRTTDRTDVDDDLRDAKEDAARVADRAGDKVGNAADRTKDAASDAGHTISNAVEDMIPGDSDRDGH
Ga0190274_128609541	3300018476	Soil	MTESISSDRQDAKDDLREAGDDVSRAADRTGDKLGDAAEHAKDGAEKVGDKVSDAIEDVIPGDSDGDGH
Ga0184647_14966742	3300019263	Groundwater Sediment	RQDAKDDLHEAGDDAARAADRTGDKIGDAADHAKEGAEKVGHKLSDAIEDVIPGDSDGDG
Ga0173482_104139611	3300019361	Soil	MTESISSDRQDAKDDLREAGDDASRAADRTGDKLGDAAEHAKDGAEKVGHKVSDAIEDVIPGDS
Ga0173482_105817731	3300019361	Soil	MSESTYSNREDARDDLDDAGDEAARAADRAGDKVGDAADRAKDGAQNVGHKVSDAIEDVIPGDSDGDGH
Ga0247766_10964702	3300022906	Plant Litter	MTESISSDRQDAKDDLREAGDDASRAADRTGDKLGDAAEHAKDGAEKVGHKVSDAIEDVIPGDSDGDGH
Ga0247757_100802062	3300023097	Plant Litter	MSESTYSNREDARDDLDDAGDEAARAADRAGDKVGDAADRAKDVGHKVSDAIEDVIPGDSDGDGH
Ga0207642_104229092	3300025899	Miscanthus Rhizosphere	QTRTEDDLRDAKDDAARAADRAGDKVGDAAERAKDDASSVGNKVSDAIEDMIPGDSDKDG
Ga0207687_106732961	3300025927	Miscanthus Rhizosphere	MEDATQTRTEDDLRDAKDDAARAADRAGDKVGDAAERAKDDASSVGNKVSDAIEDMIPGDSDKDGH
Ga0207644_115109902	3300025931	Switchgrass Rhizosphere	MTESISSERQDAKDDLHEAGDDVSRAADRTGDKLGDAAESVKDDAEKVGHKLSDAIEDVIPGDSDGDGH
Ga0207709_109174712	3300025935	Miscanthus Rhizosphere	MENATQTRTEDDLRDAKDDAARAADRAGDKVGDAAERAKDDASSVGNKVSDAIEDMIPGDSDKDGH
Ga0207704_107145352	3300025938	Miscanthus Rhizosphere	MGNDVRTTDRTDVDDELRDAKDDAARAADRAGDKVGNAADRTKDAASDAGHKISDTVEDMIPGDSDKDGH
Ga0207708_113404421	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MTESDRTTTARADDELREAGEDTARAGDRAADKVGDAADDAKDAAKSAGHKLSDAVEDMIPGDSDRDGH
Ga0268266_107782171	3300028379	Switchgrass Rhizosphere	MTESISTDRQEAKEDLHEAGDDVSRAADRTGDKLGDAAEHAKDGAEKVGHKVSDAIEDVIPGDSDGDGH
Ga0268266_110469432	3300028379	Switchgrass Rhizosphere	MTESIPSDRRTGVDDDLREAGDDMSRAADRAGDKIGDAAEKAKDGASSVGHKVSDAVEDMIPGDSDRDGH
Ga0268266_115608422	3300028379	Switchgrass Rhizosphere	MEDATQTRTEDDLRDAKDDAARAADRAGDKVGDAAERAKDDAGSVGHKVSDAIEDMIPGDSDKDGH
Ga0268266_116229942	3300028379	Switchgrass Rhizosphere	DDLHEAGDEAARAADRTGDKIGDAAEHAKDGAQKVGHKLSDAIEDVIPGDSDGDSH
Ga0308202_10903152	3300030902	Soil	MTESISSDRQDAKDDLREAGDDAARAADRTGDKIGDAAEHAKDGAEKVGHKLSDAVEDVIPGDSDGDGH
Ga0308202_11654452	3300030902	Soil	ESTPMDRRTDGEDDLREAGDDLSEAADRAGDKVGDAAGKAKDGAESVGHKISDAVEDVIPGDSDQDGH
Ga0308200_10266291	3300030905	Soil	TKERTMSESTPIDRSRDADDDLREAGDDVSKAADRAGDKIGDAAEKAKDGAESVGQKVSDAIEDVIPGDSDRDGH
Ga0308200_11100631	3300030905	Soil	SIPSDRRTDVDDDLREAGDDMSRAADRAGDKLGDAAEKAKDDASSVGHKVSDAVEDLIPGDSDRDGH
Ga0308200_11149011	3300030905	Soil	MSENIPSDRRDADDELRETGDDLSRGADRAADKLGDAAEKTKEGAESVGEKVSDAVEDMIPGDSDNDGH
Ga0308190_10316091	3300030993	Soil	MSESTPMNSPTDGEDDLREAGEDVSEAADRAGDKIGDAAEKAKDGAESVGDKLSDAVEDVIPGDSDQDGH
Ga0308189_101600762	3300031058	Soil	RTDDELRDASDDVSRAADRTADKVGDAASDAKDAAKSAGHKLSDAVEDMIPGDADADGH
Ga0308189_101809461	3300031058	Soil	GAVMTESISSDRQDAKDDLHEAGDEAARAADRTGDKIGDAAEQAKDDAQKVGHKLADAIEDVIPGDSDGDGH
Ga0308189_102577801	3300031058	Soil	VVMSESISSDRQEAKDDLHEAGDDAARAADRTGDKIGDAAEHAKDGAEKVGHKLADAIEDVIPGDSDGDGH
Ga0308189_102709641	3300031058	Soil	MTDSIPSDRQTDADGELREAGDDLSRGADRAADKVGDAAEKTKEGAESIGERVSDAIEDMIPGDSDKDGD
Ga0308189_102885163	3300031058	Soil	MTDSIPSDRQTDADDELREAGDDLSRGADRAADKVGDAAEKTKEGAESVGEKVSDAIEDMIPGDSDQDGH
Ga0308189_102973512	3300031058	Soil	TESISSEHQDTTDELREAGDDASRAADRTGDKLGDAADRAKDGAEKVGHKLSDAVEDVIPGDSDGDGH
Ga0308189_104130291	3300031058	Soil	MTESIPSDRRTEADDDLREAGDDMSQAADRAGDKVGDAAERAKDGAESLGNKVSDAVEDMIPGDSDKDGH
Ga0308189_105299201	3300031058	Soil	AHMSESTPMDRRTDGEDDLREAGDDLSEAADRAGDKVGDAAEKAKDGAESVGHKISDAVEDVIPGDSDQDGH
Ga0308201_101434632	3300031091	Soil	MTESIPSDRRTEADDDLREAGDDMSQAADRAGDKVGDAASDAKDAAKSAGHKLSDAVEDMIPGDSDADGH
Ga0308201_101578212	3300031091	Soil	GAVMTENISSDRQDAKDDLREAGDDAARAADRTGDKIGDAADHAKDGAEKVGHKLSDAIEDVIPGDSDGDGH
Ga0308201_101950601	3300031091	Soil	GKRGYLGKGAHMSESTPMDRRTDGEDDLREAGDDVSEAADRAGDKVGDAAEKAKDGAESVGHKISDAVEDVIPGDSDQDGH
Ga0308201_104027322	3300031091	Soil	KLMSESTYSNREDARDDLDDAGDEAARAADRAGDKVGDAADRAKDGAQNVGHKVSDAIEDVIPGDSDGDGH
Ga0308201_104167051	3300031091	Soil	ESISSDRQDAKDDLHEAGDDVSRAADRTGDKLGDAAEHAKDGAEKVGDKVSDAIEDVIPGDSDGDGH
Ga0308204_101850481	3300031092	Soil	MSESTPMDRRTDGEDDLREAGDDLSEAADRAGDKVGDAAEKAKDGAESVGHKISDAVEDVIPGDSDQDGH
Ga0308204_102127471	3300031092	Soil	QVMSESVSSDRRTEADDDLREAGDDASRAADRAGDKLGHAAERAKEGAATVGRKMSDAVEDAIPGDSDEDGH
Ga0308197_104314712	3300031093	Soil	EDDLREASEDASEAADRAGDKIGDAAEKAKDGAESVGDKISDAVEDVIPGDSDQDGH
Ga0308197_104612712	3300031093	Soil	MSESVPSSRRTEADDDLGEAGDDVSRAANRAGDKLGDAAERAEEGAASVGRKLSDAIEDAIPGDSDQDGH
Ga0308197_104865141	3300031093	Soil	MSESTPMDRRTDGEDDLREAGDDVSEAADRAGDKVGDAAEKAKDGAESVGHKISDAVEDVIPGDSDQDGH
Ga0308195_10157012	3300031123	Soil	MSESTPMNSPTDGEDDLREAGEDVSETADRAGDKIGNAAEKAKDGAESVGDKISDAVEDVIPGDSDEDGH
Ga0308194_101779371	3300031421	Soil	GGSMSESTPMNSPTDGEDDLREAGEDVSEAADRAGDKIGDAAEKAKDGAESVGDKISDAVEDVIPGDSDQDGH
Ga0302322_1003625522	3300031902	Fen	MTESIQSERRDDDLHEAGDDASRAADRAADKTGDAARRAKDDASEVGHKVSDAIEDVIPGDSDGDGH
Ga0307470_111741702	3300032174	Hardwood Forest Soil	MTESISSDRQDAKDDLHEAGDDVSRAADRTGDKLGDAAEHAKDGAEKVGHKVSDAIEDVIPGDSDGDGH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094022

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences