Metagenome / Metatranscriptome Family F093954

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093954
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	58 residues
Representative Sequence	MNYTSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADDKLKTPTPEA
Number of Associated Samples	84
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.95 %
% of genes near scaffold ends (potentially truncated)	35.85 %
% of genes from short scaffolds (< 2000 bps)	84.91 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.321 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (16.038 % of family members)
Environment Ontology (ENVO)	Unclassified (30.189 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.396 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.77% β-sheet: 0.00% Coil/Unstructured: 60.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00239	Resolvase	10.38
PF05016	ParE_toxin	3.77
PF05193	Peptidase_M16_C	2.83
PF01909	NTP_transf_2	2.83
PF02796	HTH_7	2.83
PF00441	Acyl-CoA_dh_1	1.89
PF02518	HATPase_c	1.89
PF04909	Amidohydro_2	1.89
PF00501	AMP-binding	1.89
PF01566	Nramp	0.94
PF03641	Lysine_decarbox	0.94
PF00005	ABC_tran	0.94
PF00342	PGI	0.94
PF01808	AICARFT_IMPCHas	0.94
PF14337	Abi_alpha	0.94
PF13181	TPR_8	0.94
PF02452	PemK_toxin	0.94
PF13560	HTH_31	0.94
PF00990	GGDEF	0.94
PF13711	DUF4160	0.94
PF01934	HepT-like	0.94
PF13340	DUF4096	0.94
PF13193	AMP-binding_C	0.94
PF03952	Enolase_N	0.94
PF12779	WXXGXW	0.94
PF01694	Rhomboid	0.94
PF00975	Thioesterase	0.94
PF13701	DDE_Tnp_1_4	0.94
PF13476	AAA_23	0.94
PF01416	PseudoU_synth_1	0.94
PF01641	SelR	0.94
PF01661	Macro	0.94
PF12399	BCA_ABC_TP_C	0.94
PF10003	DUF2244	0.94
PF13592	HTH_33	0.94
PF13432	TPR_16	0.94
PF08238	Sel1	0.94
PF00390	malic	0.94
PF02604	PhdYeFM_antitox	0.94
PF00106	adh_short	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	10.38
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	10.38
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.89
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.94
COG0101	tRNA U38,U39,U40 pseudouridine synthase TruA	Translation, ribosomal structure and biogenesis [J]	0.94
COG2445	Uncharacterized HEPN domain protein YutE, UPF0331/DUF86 family	General function prediction only [R]	0.94
COG2361	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.94
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.94
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.94
COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	Translation, ribosomal structure and biogenesis [J]	0.94
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.94
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	0.94
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG0281	Malic enzyme	Energy production and conversion [C]	0.94
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG0166	Glucose-6-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.94
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.94
COG0138	AICAR transformylase/IMP cyclohydrolase PurH	Nucleotide transport and metabolism [F]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.77 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.23 %
Unclassified	root	N/A	38.68 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.87 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	10.38 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	2.83 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	1.89 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	1.89 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.89 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.94 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.94 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	1.89 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	1.89 %
Devosia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	1.89 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.94 %
Beijerinckia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia	0.94 %
Hydrogenophaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga	0.94 %
Methyloferula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula	0.94 %
Methylocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella	0.94 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1.89 %
Devosia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	1.89 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.94 %
unclassified Beijerinckia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia	0.94 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.94 %
unclassified Hydrogenophaga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → unclassified Hydrogenophaga	0.94 %
Methyloferula stellata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	0.94 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.94 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1.89 %
Devosia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	1.89 %
Beijerinckia sp. 28-YEA-48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	0.94 %
Hydrogenophaga sp. T4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → unclassified Hydrogenophaga → Hydrogenophaga sp. T4	0.94 %
Methylocystis sp. SC2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. SC2	0.94 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.94 %
Methyloferula stellata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	0.94 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.94 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_100090806	Not Available	511	Open in IMG/M
3300005759\|Ga0078192_101130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	24762	Open in IMG/M
3300006162\|Ga0075030_100180631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1702	Open in IMG/M
3300006162\|Ga0075030_101398975	Not Available	548	Open in IMG/M
3300006354\|Ga0075021_10516230	Not Available	758	Open in IMG/M
3300007519\|Ga0105055_10633694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	850	Open in IMG/M
3300007788\|Ga0099795_10001451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5146	Open in IMG/M
3300009500\|Ga0116229_10449943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1070	Open in IMG/M
3300009500\|Ga0116229_11109086	Not Available	633	Open in IMG/M
3300009500\|Ga0116229_11238217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	594	Open in IMG/M
3300009510\|Ga0116230_10078744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2892	Open in IMG/M
3300009510\|Ga0116230_11271105	Not Available	527	Open in IMG/M
3300009510\|Ga0116230_11301662	Not Available	519	Open in IMG/M
3300009521\|Ga0116222_1425902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300009525\|Ga0116220_10533124	Not Available	535	Open in IMG/M
3300009638\|Ga0116113_1156975	Not Available	572	Open in IMG/M
3300009662\|Ga0105856_1341018	Not Available	511	Open in IMG/M
3300009701\|Ga0116228_10363799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	1004	Open in IMG/M
3300009709\|Ga0116227_10008825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	18722	Open in IMG/M
3300009709\|Ga0116227_10537137	Not Available	887	Open in IMG/M
3300009787\|Ga0116226_10103517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2944	Open in IMG/M
3300009787\|Ga0116226_10599000	Not Available	1103	Open in IMG/M
3300009787\|Ga0116226_11345088	Not Available	670	Open in IMG/M
3300010339\|Ga0074046_10081815	All Organisms → cellular organisms → Bacteria	2097	Open in IMG/M
3300010339\|Ga0074046_10547986	Not Available	687	Open in IMG/M
3300010339\|Ga0074046_10557780	Not Available	680	Open in IMG/M
3300010341\|Ga0074045_10989192	Not Available	530	Open in IMG/M
3300010343\|Ga0074044_10174231	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300010379\|Ga0136449_101202823	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300010880\|Ga0126350_12203032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300012210\|Ga0137378_11065271	Not Available	723	Open in IMG/M
3300012685\|Ga0137397_11148386	Not Available	563	Open in IMG/M
3300012917\|Ga0137395_10825753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	671	Open in IMG/M
3300012930\|Ga0137407_10449903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1198	Open in IMG/M
3300012943\|Ga0164241_10637651	Not Available	772	Open in IMG/M
3300014164\|Ga0181532_10344936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	835	Open in IMG/M
3300014168\|Ga0181534_10529142	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300014169\|Ga0181531_10788671	Not Available	592	Open in IMG/M
3300014493\|Ga0182016_10521634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	684	Open in IMG/M
3300014495\|Ga0182015_10181039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1417	Open in IMG/M
3300014495\|Ga0182015_10631116	Not Available	678	Open in IMG/M
3300014501\|Ga0182024_10792669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1156	Open in IMG/M
3300014658\|Ga0181519_11020557	Not Available	514	Open in IMG/M
3300014838\|Ga0182030_10358305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1553	Open in IMG/M
3300014838\|Ga0182030_10651202	Not Available	1001	Open in IMG/M
3300017823\|Ga0187818_10383507	Not Available	623	Open in IMG/M
3300017943\|Ga0187819_10265494	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300017948\|Ga0187847_10742867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300017955\|Ga0187817_10429263	Not Available	843	Open in IMG/M
3300018043\|Ga0187887_10497521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	719	Open in IMG/M
3300018046\|Ga0187851_10779023	Not Available	538	Open in IMG/M
3300018468\|Ga0066662_11200370	All Organisms → cellular organisms → Bacteria → Proteobacteria	768	Open in IMG/M
3300021086\|Ga0179596_10004515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4084	Open in IMG/M
3300021401\|Ga0210393_10161588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1803	Open in IMG/M
3300021856\|Ga0213850_1154670	Not Available	598	Open in IMG/M
3300022733\|Ga0224562_1023388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. SC2	514	Open in IMG/M
3300025574\|Ga0208717_1121747	Not Available	570	Open in IMG/M
3300025679\|Ga0207933_1011524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4187	Open in IMG/M
3300026555\|Ga0179593_1066991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1787	Open in IMG/M
3300027667\|Ga0209009_1050843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1035	Open in IMG/M
(restricted) 3300027728\|Ga0247836_1000037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	197250	Open in IMG/M
3300027812\|Ga0209656_10179299	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300027824\|Ga0209040_10161934	Not Available	1197	Open in IMG/M
3300027824\|Ga0209040_10302360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M
3300027895\|Ga0209624_10239390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1206	Open in IMG/M
3300027898\|Ga0209067_10342428	Not Available	828	Open in IMG/M
3300027898\|Ga0209067_10353281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	816	Open in IMG/M
3300027903\|Ga0209488_10000496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	33272	Open in IMG/M
3300027911\|Ga0209698_10177520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → unclassified Beijerinckia → Beijerinckia sp. 28-YEA-48	1733	Open in IMG/M
3300027911\|Ga0209698_11132285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	579	Open in IMG/M
3300028560\|Ga0302144_10281594	Not Available	538	Open in IMG/M
3300028562\|Ga0302151_10292947	Not Available	540	Open in IMG/M
3300028773\|Ga0302234_10170526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	945	Open in IMG/M
3300028779\|Ga0302266_10118684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1061	Open in IMG/M
3300028783\|Ga0302279_10476017	Not Available	504	Open in IMG/M
3300028813\|Ga0302157_10225625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1059	Open in IMG/M
3300028866\|Ga0302278_10196197	Not Available	1007	Open in IMG/M
3300028882\|Ga0302154_10101351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → unclassified Hydrogenophaga → Hydrogenophaga sp. T4	1553	Open in IMG/M
3300029907\|Ga0311329_10942810	Not Available	539	Open in IMG/M
3300029920\|Ga0302142_1168202	Not Available	670	Open in IMG/M
3300029943\|Ga0311340_10398615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1266	Open in IMG/M
3300029952\|Ga0311346_11491236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	506	Open in IMG/M
3300029954\|Ga0311331_11195309	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300029994\|Ga0302283_1045879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2054	Open in IMG/M
3300030020\|Ga0311344_10686036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	858	Open in IMG/M
3300030058\|Ga0302179_10535134	Not Available	514	Open in IMG/M
3300030520\|Ga0311372_11178057	All Organisms → cellular organisms → Bacteria → Proteobacteria	985	Open in IMG/M
3300030688\|Ga0311345_10285330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1576	Open in IMG/M
3300030738\|Ga0265462_11694049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	600	Open in IMG/M
3300031234\|Ga0302325_11179065	Not Available	1022	Open in IMG/M
3300031261\|Ga0302140_10061136	All Organisms → cellular organisms → Bacteria → Proteobacteria	4029	Open in IMG/M
3300031524\|Ga0302320_10502053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1468	Open in IMG/M
3300031524\|Ga0302320_10511782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1447	Open in IMG/M
3300031525\|Ga0302326_11094000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1108	Open in IMG/M
3300031525\|Ga0302326_13237899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	549	Open in IMG/M
3300031708\|Ga0310686_110493623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	614	Open in IMG/M
3300031708\|Ga0310686_112250613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1843	Open in IMG/M
3300031708\|Ga0310686_115795988	All Organisms → cellular organisms → Bacteria	3768	Open in IMG/M
3300031788\|Ga0302319_10256883	All Organisms → cellular organisms → Bacteria	2108	Open in IMG/M
3300032515\|Ga0348332_10818319	Not Available	925	Open in IMG/M
3300032515\|Ga0348332_12009536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	597	Open in IMG/M
3300032515\|Ga0348332_13551257	Not Available	682	Open in IMG/M
3300032896\|Ga0335075_10446891	All Organisms → cellular organisms → Bacteria → Proteobacteria	1349	Open in IMG/M
3300032898\|Ga0335072_10549139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1179	Open in IMG/M
3300033755\|Ga0371489_0047668	Not Available	2898	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.74%
Host-Associated	Host-Associated	12.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.15%
Aquatic	Environmental → Aquatic	23.58%
Plants	Host-Associated → Plants	11.32%
Algae	Host-Associated → Algae	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.79%
Peat	Environmental → Terrestrial → Peat	24.53%
Freshwater	Environmental → Aquatic → Freshwater	16.04%
Peat Moss	Host-Associated → Plants → Peat Moss	11.32%
Sediment	Environmental → Aquatic → Sediment	6.60%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.83%
Marine	Environmental → Aquatic → Marine	0.94%
Green Algae	Host-Associated → Algae → Green Algae	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	24.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	21.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.21%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.21%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	11.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.60%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.83%
Loam	Environmental → Terrestrial → Soil → Loam	1.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Lake	Environmental → Aquatic → Freshwater → Lake	0.94%
Ice	Environmental → Aquatic → Freshwater → Ice	0.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.94%
Unclassified	Host-Associated → Algae → Green Algae → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	24.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.98%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	11.32%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.60%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.60%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.60%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.94%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Unclassified	Host-Associated → Algae → Green Algae → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	16.04%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	11.32%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.55%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.60%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.66%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	4.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.83%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.83%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.89%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.89%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.94%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.94%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.94%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.94%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.94%
Scenedesmus Quadricauda Associated	Host-Associated → Algae → Green Algae → Unclassified → Unclassified → Scenedesmus Quadricauda Associated	0.94%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300005759	Scenedesmus quadricauda associated microbial communities from Germany - MZCH: 10104	Host-Associated	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300007519	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009662	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021856	Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - LL:C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022733	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3	Environmental	Open in IMG/M
3300025574	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)	Environmental	Open in IMG/M
3300025679	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027728 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300028562	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028779	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2	Environmental	Open in IMG/M
3300028783	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029920	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_3	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029994	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_4	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1000908062	3300001213	Wetland	MNYTPSEKPVPESIAAGLARSEAQIAAGQTVPLEPVLGRLRASIARMQADKK
Ga0078192_10113016	3300005759	Scenedesmus Quadricauda Associated	MNYVPPEKPVPESIAASLARSEAQIAEGRTVPLEPVLARLRSSIARMQARPETSAPKE*
Ga0075030_1001806313	3300006162	Watersheds	MNYTSPNPPVPESITASLVRSEAQIAAGQSVPLEPVLDRLRSSIERMQRD
Ga0075030_1013989751	3300006162	Watersheds	VCAGLTVWRDTRAMNYTSPDMLVHEAIAASLARSEAQIAAGQTVSLEPVLDRLRASIARMQADEMPAPPAAEA*
Ga0075021_105162302	3300006354	Watersheds	MKYTWPDKPVPESIAARLARSEAQIAAGQTVPLEPVLDRLRASIARMQADEKPAPLTPKA
Ga0105055_106336943	3300007519	Freshwater	MNYVPPEKPVPESVAASLARSEAQIAEGRTVPLEPVLDRLRASIARMQSDGQQGAPAPKA
Ga0099795_100014511	3300007788	Vadose Zone Soil	MNYTLPKVVPESIAASLARSEAQIAAGQTVPLQPVLDRLRSSIARMQADEKLKSPTPKA*
Ga0116229_104499433	3300009500	Host-Associated	MNYVAPEKPVPESIAASLARSEAQIAAGQTVPLEPVVDRLRASIARMQQAEDEKRKTPTPKG*
Ga0116229_111090862	3300009500	Host-Associated	MNYTSPDRPVPESIAASLAPSEAQIAAGQTVPLESVLDRLRASIARMQVDCL*
Ga0116229_112382173	3300009500	Host-Associated	KLMNFTPPEKPIPESIAASLARSEAQIAAGRTVPLEPVLDRLRASIARMQANERPETPSPKA*
Ga0116230_100787446	3300009510	Host-Associated	MNYPSTDKPVPESIADSLARSEAQIAAGQTVPLEPVLDRIRASIARMRADEKPKPLTPKA
Ga0116230_112711051	3300009510	Host-Associated	MNYKSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRASIIRMQAGDEKRETPPP
Ga0116230_113016621	3300009510	Host-Associated	MNYTSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRASIARMQDDKKSEPPTLKA
Ga0116222_14259023	3300009521	Peatlands Soil	VTNYTSPKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADDKLKRPTPPEA*
Ga0116220_105331241	3300009525	Peatlands Soil	MNYTPPKPVPESIAASLARSEAQIAAGQTVPFEPVLDRLRSGIARMQADEKLKTPTPEA*
Ga0116113_11569751	3300009638	Peatland	MNYTSPDKPVPESIAASLARSEAQIAAGQTVPLGPVLDRLRSSIARMQAEDEKPKTPSPKG*
Ga0105856_13410182	3300009662	Permafrost Soil	MNYTPPDKPVPESIAASLPRSEAQIAAGHTVPLEPVLIRLRASIARMQADDKPKAPS
Ga0116228_103637992	3300009701	Host-Associated	MNYTSPDKPVPESIAESLARSEAQIAAGETVPLEPVLDRLRASIARMQVDEKLEPLTPKE
Ga0116227_1000882512	3300009709	Host-Associated	MNYTSPDKPVPESIAASLARSETQIAAGQTVPLEPVLDRLRTSISRMQADKKQEPLTPRA
Ga0116227_105371373	3300009709	Host-Associated	MNFTPPEKPIPESIAASLARSEAQIAAGRTVPLEPVLDRLRASIARMQANERPETPSPKA
Ga0116226_101035172	3300009787	Host-Associated	MNYVAPNKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADEKLKAPQPKA
Ga0116226_105990002	3300009787	Host-Associated	MNYTPKPVPESMSASLARSEAQIAAGQTVPMEPVLDRLRASIARMQTEKQPKPDMPRE*
Ga0116226_113450882	3300009787	Host-Associated	MNYVSPEKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRASIARMQQAEDEKLKTPTPKG*
Ga0074046_100818154	3300010339	Bog Forest Soil	MNLVSPDKPIPESITASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQNAEDEKPKTPTPKG*
Ga0074046_105479862	3300010339	Bog Forest Soil	MNLVSSDKPVPESISASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQKAEDEKLETPTPKG*
Ga0074046_105577802	3300010339	Bog Forest Soil	MNLVSPNKPVPESMSASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQKAEDEKLKTPPSKG*
Ga0074045_109891922	3300010341	Bog Forest Soil	MNLVSPDKPIPESITASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQNAEDEKLKTPTPKG*
Ga0074044_101742313	3300010343	Bog Forest Soil	MNLVSPNKPVPESISASLARSEAQIAAEQTVPLEPVLDRLRSSIARMQKAEDEKLETPTPKG*
Ga0136449_1012028233	3300010379	Peatlands Soil	VPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADDKLKTLHPRHDCT*
Ga0126350_122030322	3300010880	Boreal Forest Soil	PKPVPESIAASLARSEAQIAAGQTVALEPVLDRLRSSIARMQADEKLKTPTPKE*
Ga0137378_110652711	3300012210	Vadose Zone Soil	MNYTLPKIVPESITASLARSEAQIAAGQTVPLQPVLDRLRSSIARMQADEKLNSPTPKA*
Ga0137397_111483861	3300012685	Vadose Zone Soil	MNYTLPKVVPESIAASLARSEAQIAAGQTVPLQPVLDRLHSSIARMQADEKLKSPTPKA*
Ga0137395_108257533	3300012917	Vadose Zone Soil	EAGLWYDSLMNYTPPKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADF*
Ga0137407_104499032	3300012930	Vadose Zone Soil	MNYTLPKVVPESIAASLARSEAQIAAGQTVPLQPVLDRFRSSIARMQADEKLKSPTPKA*
Ga0164241_106376511	3300012943	Soil	MNYVPPEKPVPESIAASLARSEAQIAEGRNVPLQPVLDRLRASIARMQA*
Ga0181532_103449363	3300014164	Bog	MNLVSPNKPVPESITASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQKAEDEKLETPTSKG*
Ga0181534_105291421	3300014168	Bog	MNYTSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQAD
Ga0181531_107886712	3300014169	Bog	MNYASPEKAVPESIAANLARSETRIAAGQTAPLEPVVERFRASIARMHADGKRKTP
Ga0182016_105216343	3300014493	Bog	HTLPRRDLRLATGQSVPLEPVLDRLRASIARMQADEKLKPPTPKG*
Ga0182015_101810392	3300014495	Palsa	MNYTMNYASPDEPVPESIAASLTRSEAQIAAGQIVPLEPVLDRLRSSIDRMKACR*
Ga0182015_106311162	3300014495	Palsa	MNYTSPDKPVPESIDASLARSEAQIAAGQTVPLGPVLDRLRSSIARMQAADEKPKTPTPKG*
Ga0182024_107926692	3300014501	Permafrost	MSYTPPEKPDPESIATSLARSEAQIAAGQTVPLEPALERLRVSIGRMKLDKTVRPPFAKE
Ga0181519_110205571	3300014658	Bog	PESMAASLARSEAQIATGQTVALAPVLERLRRSIARMQATDEKAPPEPKA*
Ga0182030_103583052	3300014838	Bog	MNYPSPKPVPESITASLARSEAQIAAGRTVPLEPVLDRLRASIARMQADEKLKPPTPKG*
Ga0182030_106512021	3300014838	Bog	MNYTSPDKPVPKSIAAASLARSEAQIAAGQTVPLEPVLDRLRASIARMQADDEKLETATPKG*
Ga0187818_103835072	3300017823	Freshwater Sediment	VVLSLMNYTPPKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADDKLKTPTPPEA
Ga0187819_102654942	3300017943	Freshwater Sediment	MNYTPPKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADDKLKTPTPPEA
Ga0187847_107428673	3300017948	Peatland	VPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQAAEEEKLKTPSPKG
Ga0187817_104292632	3300017955	Freshwater Sediment	VVLSLMNYTPPKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADDKLKTLTPEA
Ga0187887_104975211	3300018043	Peatland	PVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQANDEKPKTPSPKG
Ga0187851_107790232	3300018046	Peatland	MNYVAPDEPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQQAEDEKLNPPSPKG
Ga0066662_112003702	3300018468	Grasslands Soil	MNYAPTEKPVPESIAASLARSEAQIAAGQTTPLEPALDRLRASIARMQAE
Ga0179596_100045151	3300021086	Vadose Zone Soil	ESIAASLARSEAQIAAGQTVPLQPVLDRLRSSIARMQADEKLKSPTPKA
Ga0210393_101615883	3300021401	Soil	MNYTPPKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADENLKTPTPEA
Ga0213850_11546701	3300021856	Watersheds	PDKPVPEVIIASLARSEAQIAAGQTVPLDPVLDRLRASIARMQSNETPAPPTPEA
Ga0224562_10233882	3300022733	Soil	MNYTSPDKPVPESIAASLARSEAQIAAGQTVPLQPVLDRLSSGIDRMQACR
Ga0208717_11217472	3300025574	Arctic Peat Soil	MNYTSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRASIARMQADEKPAP
Ga0207933_10115243	3300025679	Arctic Peat Soil	MNYTSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRASIARMQADEKPAPPAPKA
Ga0179593_10669911	3300026555	Vadose Zone Soil	MNYTLPKVVPESIAASLARSEAQIAAGQTVPLQPVLDRLRSSIARMQADEKL
Ga0209009_10508432	3300027667	Forest Soil	MNYTPKPVPESIAAILARSEAQIAAGQTVPLQPVLDRLRSSIARMQADDEKLKTPTPEG
(restricted) Ga0247836_1000037155	3300027728	Freshwater	MNYVQPDKPVPESTAASLARSEAQIAAGRTVPLEPVLDRLRASIARMQDDEKPETPAL
Ga0209656_101792992	3300027812	Bog Forest Soil	MNLVSPDKPIPESITASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQNAEDEKLKTPTPKG
Ga0209040_101619342	3300027824	Bog Forest Soil	MNLVSSDKPVPESISASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQKAEDEKLETPTPKG
Ga0209040_103023603	3300027824	Bog Forest Soil	NSPMNLVSPDKPIPESITASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQNAEDEKLKTPTPKG
Ga0209624_102393902	3300027895	Forest Soil	LWYNAYMNYTSPKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADDEKLKTPPSEA
Ga0209067_103424281	3300027898	Watersheds	MNYTSPDMLVHEAIAASLARSEAQIAAGQTVSLEPVLDRLRASIARMQADEMPAPPAAEA
Ga0209067_103532812	3300027898	Watersheds	MNYTSPDKPVPEVIIASLARSEAQIAAGQTVPLDPVLDRLRASIARMQSNETPAPPTPEA
Ga0209488_1000049613	3300027903	Vadose Zone Soil	MNYTLPKVVPESIAASLARSEAQIAAGQTVPLQPVLDRLRSSIARMQADEKLKSPTPKA
Ga0209698_101775201	3300027911	Watersheds	MNYTSPNPPVPESITASLVRSEAQIAAGQSVPLEPVLDRLRSSIERMQRDGKQQPPPTVK
Ga0209698_111322851	3300027911	Watersheds	MPPGWLVESLDRSEAQIAAGQTVPLEPVLDRLRASIARMKADQKPKAPTPEA
Ga0302144_102815941	3300028560	Bog	MNYMSPTKPVPESIAASLARSEAHIAAGQTVPLEPVLDRLRASIARMQAESEKPKTLTPK
Ga0302151_102929472	3300028562	Bog	MNFVSPDKPVPESIVASLARSEAQIAAGQTVPLEPVLDRLRLSIARMQAEAEGEKPDAPAARSPTRRA
Ga0302234_101705262	3300028773	Palsa	MNYTPPEKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRASIARMKADDKPETPSPKA
Ga0302266_101186842	3300028779	Bog	MNYVAPEKPIPESIAASLARSEAQIAAGQTVPLEPVFDRLRASIARMRPA
Ga0302279_104760172	3300028783	Bog	MNFVSPDKPVPESIVASLARSEAQIAAGQTVPLEPVLDRLRLSIARMQAEAEGEKPDAPAARSP
Ga0302157_102256251	3300028813	Bog	MNYTPPEKPVPESIAASLARSEAQIEDGKTVALEPVLERLRLSIARMKDNETPTPPAS
Ga0302278_101961972	3300028866	Bog	MNYMSPTKPVPESIAASLARSEAHIAAGQTVPLEPVLDRLRASIARMQAESEKPKT
Ga0302154_101013512	3300028882	Bog	MNFVSPDKPVPESIVASLARSEAQIAAGQTVPLEPVLDRLRLSIARMQAEAEGEKPDAPAARSPTRRADCPL
Ga0311329_109428102	3300029907	Bog	LMNYVAPEKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRASIARMQQAEDEKLKTPTPKE
Ga0302142_11682022	3300029920	Bog	MSPTKPVPESIAASLARSEAHIAAGQTVPLEPVLDRLRASIARMQAESEKPKTLTPKE
Ga0311340_103986152	3300029943	Palsa	MNYTSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSITRMQAGDAKSSCQYQNPF
Ga0311346_114912363	3300029952	Bog	PAKPVPESIAASLARSEAQIAAGQAVPLKPVLDRLRASINRMKAA
Ga0311331_111953091	3300029954	Bog	MNYTPPEKPAPESITASLARSEAQIEAGKTVPLEPVLERLRLSIARMQAGGDAAPFKPKA
Ga0302283_10458794	3300029994	Fen	IMNYMSPTKPVPESIAASLARSEAHIAAGQTVPLEPVLDRLRASIARMQAESEKPKTLTPKE
Ga0311344_106860362	3300030020	Bog	LNYTSPDKPVPESIAANLARSEAQIAAGQTVPLKPVLERLRASIARMQADENPAPLTPKA
Ga0302179_105351342	3300030058	Palsa	SIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQANDEKPKTPSPKR
Ga0311372_111780572	3300030520	Palsa	MNYKSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRASIASMQANEKPKLRSPKA
Ga0311345_102853301	3300030688	Bog	MNYTSPDKPVPKSIAAASLARSEAQIAAGQTVPLEPVLDRLRASIARMQADDEKLETATPKG
Ga0265462_116940493	3300030738	Soil	KPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADDKLKTPTPEA
Ga0302325_111790652	3300031234	Palsa	MNYTSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSITRMQAGDAKSSCQNQNPF
Ga0302140_100611365	3300031261	Bog	MNYTSPDKRVPESIAAASLARSEAQIAAGQTVPLEPVLDRLRASIARMQADDEKLETATPKG
Ga0302320_105020532	3300031524	Bog	MNYAPSEKPVPESIAASLARSEAQIEAGKTVPLEPVLERLRLSIARMQNAETPVPPAPEA
Ga0302320_105117822	3300031524	Bog	MNYTPPEKPVPESIAASLARSEAQIEDGKTVALEPVLERLRLSIARMKDNETPT
Ga0302326_110940001	3300031525	Palsa	TSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQAEDEKI
Ga0302326_132378991	3300031525	Palsa	MNYTSSDEPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQA
Ga0310686_1088634391	3300031708	Soil	MNYLPAKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSTDIPNRL
Ga0310686_1104936233	3300031708	Soil	VPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADDKLKTPTPEA
Ga0310686_1122506134	3300031708	Soil	MSYTPPKHVPESIAASLARSEAQIAAGQTVPFEPVLDRLRSSIARMQADEKLKTPTPEA
Ga0310686_1157959881	3300031708	Soil	MNYTSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQANDEKPKTPSPK
Ga0302319_102568834	3300031788	Bog	MNFVSPDKPVPESIVASLARSEAQIAAGRTVPLEPVLDRLRLSIARMQAEAEGEKPDAPAARSPTRRADC
Ga0348332_108183191	3300032515	Plant Litter	MTRHPISPFPESIAASLARSEAQIEAGQTVPLEPVLDRLRSSIDRMRADDEKLKTPTSKG
Ga0348332_120095363	3300032515	Plant Litter	PESITASLARSEAQIAAGQAVPLQPVLDRLCSGIDRMQACR
Ga0348332_135512572	3300032515	Plant Litter	MNYTSPDKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRSSIARMQADDKLKTPTPEA
Ga0335075_104468913	3300032896	Soil	MNYTPPEKPVPESIAASLARSEAQIAAGQTVPLEPVLDRLRASIARMQADEKPETPSPKA
Ga0335072_105491391	3300032898	Soil	MNYTPPEKPVPESIAASLARSEAQIAAGQSVPLEPVLDRLRASIARMQADEKPETPSPKA
Ga0371489_0047668_1816_1998	3300033755	Peat Soil	MNYTPTEKPVPESISASLARSEAQIAAGQSVALEPVLDRLRASIARMQADAEPETPPHEA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters