Metagenome Family F093937

Basic Information
Family ID	F093937
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	44 residues
Representative Sequence	MAIGLSHGGSNVYAATERSRQLWVGTQDGLVLFERGNNGWRE
Number of Associated Samples	99
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	90.57 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Most Common Taxonomy
Group	Bacteria (98.113 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (8.491 % of family members)
Environment Ontology (ENVO)	Unclassified (29.245 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (32.075 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 32.86% Coil/Unstructured: 67.14%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF09084	NMT1	14.15
PF13379	NMT1_2	6.60
PF00355	Rieske	6.60
PF03992	ABM	4.72
PF08450	SGL	2.83
PF03972	MmgE_PrpD	2.83
PF02826	2-Hacid_dh_C	1.89
PF02515	CoA_transf_3	0.94
PF01425	Amidase	0.94
PF00198	2-oxoacid_dh	0.94
PF12697	Abhydrolase_6	0.94
PF13531	SBP_bac_11	0.94
PF00753	Lactamase_B	0.94
PF00999	Na_H_Exchanger	0.94
PF02776	TPP_enzyme_N	0.94
PF13551	HTH_29	0.94
PF00389	2-Hacid_dh	0.94
PF02457	DAC	0.94
PF01491	Frataxin_Cyay	0.94
PF01738	DLH	0.94
PF02878	PGM_PMM_I	0.94
PF00149	Metallophos	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	14.15
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	14.15
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	2.83
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	2.83
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	2.83
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.94
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.94
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.94
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	0.94
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.94
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.94
COG1965	Fe-S cluster assembly protein CyaY, frataxin homolog	Inorganic ion transport and metabolism [P]	0.94
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.94
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.94
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.11 %
Unclassified	root	N/A	1.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.11 %
Unclassified	root	N/A	1.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.11 %
Unclassified	root	N/A	1.89 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.94 %
Unclassified	root	N/A	1.89 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.94 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	40.57 %
Unclassified	root	N/A	1.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.94 %
Acidithiobacillia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	40.57 %
Unclassified	root	N/A	1.89 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.94 %
Acidithiobacillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales	0.94 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	35.85 %
Unclassified	root	N/A	1.89 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.94 %
Acidithiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae	0.94 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	35.85 %
Unclassified	root	N/A	1.89 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	0.94 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.94 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	35.85 %
Unclassified	root	N/A	1.89 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.94 %
Acidithiobacillus thiooxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus thiooxidans	0.94 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000787\|JGI11643J11755_11450532	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300000955\|JGI1027J12803_103827353	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	869	Open in IMG/M
3300000956\|JGI10216J12902_114034010	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300002223\|C687J26845_10196578	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	712	Open in IMG/M
3300003324\|soilH2_10304120	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300003999\|Ga0055469_10197687	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300004013\|Ga0055465_10037051	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300004114\|Ga0062593_103209952	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	524	Open in IMG/M
3300004463\|Ga0063356_101843414	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	910	Open in IMG/M
3300004480\|Ga0062592_100052388	All Organisms → cellular organisms → Bacteria	2227	Open in IMG/M
3300004808\|Ga0062381_10311782	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	581	Open in IMG/M
3300005294\|Ga0065705_10395035	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	890	Open in IMG/M
3300005341\|Ga0070691_10060664	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1818	Open in IMG/M
3300005345\|Ga0070692_10921352	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300005356\|Ga0070674_101878487	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005440\|Ga0070705_101553967	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005446\|Ga0066686_10058590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	2376	Open in IMG/M
3300005456\|Ga0070678_101907839	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300005546\|Ga0070696_100629742	All Organisms → cellular organisms → Bacteria → Proteobacteria	868	Open in IMG/M
3300005713\|Ga0066905_101364280	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	640	Open in IMG/M
3300005878\|Ga0075297_1007823	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	988	Open in IMG/M
3300006358\|Ga0068871_100212991	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1672	Open in IMG/M
3300006358\|Ga0068871_102004066	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300006845\|Ga0075421_102125679	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300006854\|Ga0075425_100218602	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300006854\|Ga0075425_101280823	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	831	Open in IMG/M
3300006903\|Ga0075426_11263525	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300007076\|Ga0075435_101694935	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300007255\|Ga0099791_10570618	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300009100\|Ga0075418_11785498	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	669	Open in IMG/M
3300009162\|Ga0075423_12041570	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300009807\|Ga0105061_1083093	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	538	Open in IMG/M
3300009811\|Ga0105084_1071300	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	632	Open in IMG/M
3300010320\|Ga0134109_10043292	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1472	Open in IMG/M
3300010360\|Ga0126372_10318506	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300010364\|Ga0134066_10399841	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300010366\|Ga0126379_11974747	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300010373\|Ga0134128_10407624	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300010396\|Ga0134126_12503566	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	561	Open in IMG/M
3300010397\|Ga0134124_11014959	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300010397\|Ga0134124_11111490	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300010399\|Ga0134127_11250900	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300010403\|Ga0134123_10090041	All Organisms → cellular organisms → Bacteria → Proteobacteria	2415	Open in IMG/M
3300012038\|Ga0137431_1184036	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	593	Open in IMG/M
3300012039\|Ga0137421_1086960	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	889	Open in IMG/M
3300012173\|Ga0137327_1127118	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	562	Open in IMG/M
3300012200\|Ga0137382_10170221	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300012200\|Ga0137382_10777938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus thiooxidans	688	Open in IMG/M
3300012210\|Ga0137378_10491750	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1133	Open in IMG/M
3300012231\|Ga0137465_1186668	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	626	Open in IMG/M
3300012355\|Ga0137369_10631802	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300012930\|Ga0137407_11900092	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	568	Open in IMG/M
3300012948\|Ga0126375_11404440	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	592	Open in IMG/M
3300012985\|Ga0164308_10109181	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1964	Open in IMG/M
3300014300\|Ga0075321_1099706	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300014877\|Ga0180074_1028730	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1117	Open in IMG/M
3300014881\|Ga0180094_1022943	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1229	Open in IMG/M
3300015200\|Ga0173480_11224335	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	508	Open in IMG/M
3300015372\|Ga0132256_100016615	All Organisms → cellular organisms → Bacteria	6460	Open in IMG/M
3300015373\|Ga0132257_104204313	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300015374\|Ga0132255_106096279	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300016422\|Ga0182039_10774618	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300018052\|Ga0184638_1006597	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3821	Open in IMG/M
3300018054\|Ga0184621_10165627	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300018071\|Ga0184618_10009552	All Organisms → cellular organisms → Bacteria	2877	Open in IMG/M
3300018078\|Ga0184612_10265768	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	884	Open in IMG/M
3300018422\|Ga0190265_10853398	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1033	Open in IMG/M
3300018433\|Ga0066667_11679254	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300018469\|Ga0190270_10653795	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1034	Open in IMG/M
3300018469\|Ga0190270_13428132	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	503	Open in IMG/M
3300019879\|Ga0193723_1081112	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300020060\|Ga0193717_1214924	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300020197\|Ga0194128_10042496	All Organisms → cellular organisms → Bacteria	3486	Open in IMG/M
3300021082\|Ga0210380_10011929	All Organisms → cellular organisms → Bacteria	3634	Open in IMG/M
3300021560\|Ga0126371_13239354	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	550	Open in IMG/M
3300024055\|Ga0247794_10318634	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300025155\|Ga0209320_10020649	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3209	Open in IMG/M
3300025157\|Ga0209399_10053404	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1662	Open in IMG/M
3300025159\|Ga0209619_10111463	All Organisms → cellular organisms → Bacteria → Proteobacteria	1622	Open in IMG/M
3300025160\|Ga0209109_10077610	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1732	Open in IMG/M
3300025160\|Ga0209109_10267608	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	824	Open in IMG/M
3300025165\|Ga0209108_10172999	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300025289\|Ga0209002_10681006	Not Available	540	Open in IMG/M
3300025311\|Ga0209343_10133907	All Organisms → cellular organisms → Bacteria → Proteobacteria	1987	Open in IMG/M
3300025318\|Ga0209519_10506636	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300025322\|Ga0209641_10740437	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	668	Open in IMG/M
3300025968\|Ga0210103_1031991	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300025996\|Ga0208777_1004856	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1156	Open in IMG/M
3300026323\|Ga0209472_1107309	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300026464\|Ga0256814_1044405	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	556	Open in IMG/M
3300027526\|Ga0209968_1049007	All Organisms → cellular organisms → Bacteria → Proteobacteria	731	Open in IMG/M
3300027552\|Ga0209982_1079632	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300027765\|Ga0209073_10125750	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300027875\|Ga0209283_10236704	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1211	Open in IMG/M
3300027907\|Ga0207428_10876836	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	635	Open in IMG/M
3300027907\|Ga0207428_11038152	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300027979\|Ga0209705_10598847	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300028807\|Ga0307305_10238171	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300031228\|Ga0299914_10338885	Not Available	1320	Open in IMG/M
3300031229\|Ga0299913_10300679	All Organisms → cellular organisms → Bacteria → Proteobacteria	1591	Open in IMG/M
3300031720\|Ga0307469_10200791	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300031740\|Ga0307468_102148083	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	539	Open in IMG/M
3300031847\|Ga0310907_10621587	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300031854\|Ga0310904_10311548	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1001	Open in IMG/M
3300033433\|Ga0326726_12465779	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	505	Open in IMG/M
3300034151\|Ga0364935_0060644	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.08%
Host-Associated	Host-Associated	17.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.21%
Aquatic	Environmental → Aquatic	18.87%
Plants	Host-Associated → Plants	17.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.38%
Sediment	Environmental → Aquatic → Sediment	9.43%
Freshwater	Environmental → Aquatic → Freshwater	5.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.66%
Marine	Environmental → Aquatic → Marine	2.83%
Roots	Host-Associated → Plants → Roots	1.89%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.94%
Peat	Environmental → Terrestrial → Peat	0.94%
Floodplain	Environmental → Terrestrial → Floodplain	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.49%
Loam	Environmental → Terrestrial → Soil → Loam	6.60%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.89%
Sand	Environmental → Terrestrial → Soil → Sand	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.89%
Lake	Environmental → Aquatic → Freshwater → Lake	0.94%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.02%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.49%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.66%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.77%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.89%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.89%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.60%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.66%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.89%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.89%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.94%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.94%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.94%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002223	Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_1.2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005878	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012039	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014300	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D1	Environmental	Open in IMG/M
3300014877	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D	Environmental	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020197	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65m	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025155	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4	Environmental	Open in IMG/M
3300025157	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3 (SPAdes)	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025311	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes)	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025968	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025996	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026464	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 CS5	Environmental	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093937

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_114505322	3300000787	Soil	MAIGLSHGGTNVYSASAPSRELWAATQDGLVLFERNANGKWLESRRALR
JGI1027J12803_1038273531	3300000955	Soil	MAIGLSHGGNNVYSSNEPSRQLWVGTKDGLVLFERADDGRWRE
JGI10216J12902_1140340101	3300000956	Soil	MAIGLSHGGTNVYSAGERSKQLWVATQDGLALFERANDGWRETQRALRGQHISAI
C687J26845_101965781	3300002223	Soil	MAIGLSHGGTNVYSSKERARQLWVATKDGVVLFERVNGGKWRETRRALRGQHIS
soilH2_103041203	3300003324	Sugarcane Root And Bulk Soil	MAIGLSHGGTNVYSAAERSHQLWAATQDGLVLFERESAGKWREARRALRGQHISSIIFERTTGT
Ga0055469_101976871	3300003999	Natural And Restored Wetlands	MALGLSHGGTNVYSAAVRSCDLWVATQDGLVLLARSDGGRWCEVRG
Ga0055465_100370512	3300004013	Natural And Restored Wetlands	MAIALSHGGTNVYSAPQPSQQLWVGTQDGLVLYERMDNREWREARR
Ga0062593_1032099522	3300004114	Soil	MAIGLSHGGTNVYSAGERSNQLWVATQDGLVLFERAGIGQWREAQR
Ga0063356_1018434142	3300004463	Arabidopsis Thaliana Rhizosphere	MSIGLSHGGSNIYSSAEPSRQLWVATQDGLVLLERNSGADWN
Ga0062592_1000523881	3300004480	Soil	MAIGLSHGGTNVYSAPSGSRELWVATQDGLVLFERGEGGHWRES
Ga0062381_103117821	3300004808	Wetland Sediment	VAIGLSHGGTNVYSAGERSKQLWVATKDGLVQLERESAGQWREVQRALRGQ
Ga0065705_103950352	3300005294	Switchgrass Rhizosphere	MAVGLSHGGTNVYSAGERSHQLWVATQDGLVLFERSRNGWQE
Ga0070691_100606643	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MAIGLSHGGSNVYSSPERSRELWVGTQDGLVMFTREDSGNWREAHRA
Ga0070692_109213522	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MAIGLSHGGTNVYSSGETPRQLWVGTQDGLVLFERTSDGQWREAQRALKGQHISSI
Ga0070674_1018784872	3300005356	Miscanthus Rhizosphere	MAIGLSHGGTNVYSSTERSHQLWAGTQDGLVLFEREKSGKWREAQRSL
Ga0070705_1015539671	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MAIGLSHGGTNVYSSGETPRQLWVGTQDGLVLFERAGDGQWR
Ga0066686_100585901	3300005446	Soil	MAIGLSHGGTNVYSSNEGSRQLWVSTQDGLVQFERESNGKWREAQRALR
Ga0070678_1019078392	3300005456	Miscanthus Rhizosphere	MAIGLSHGGSNVYSSTARSGELWVGTQDGLVMFTREDGGKWREAHRALR
Ga0070696_1006297423	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MAIGLSHGGTNVYSSGETPRQLWVGTQDGLVLFERTSDGQWREAQRALK
Ga0066905_1013642801	3300005713	Tropical Forest Soil	MAIGLSHGGNNVYASNEPSRQLWVGTKDGLVLFER
Ga0075297_10078231	3300005878	Rice Paddy Soil	MAIGLSHGGTNVYLASAPSRELWAATQDGLVLFERNAN
Ga0068871_1002129911	3300006358	Miscanthus Rhizosphere	MAIGLSHGGSNVYSSPERSRELWVGTQDGLVMFTREDSGNWREAHRALRGQ
Ga0068871_1020040662	3300006358	Miscanthus Rhizosphere	MAIGLSHGGSNVYSSTARSGELWVGTQDGLVMFTREDGGKWREAH
Ga0075421_1021256791	3300006845	Populus Rhizosphere	MTIGLSDGGTNVYSKPQASRQLWVATQDGLVLFERA
Ga0075425_1002186021	3300006854	Populus Rhizosphere	MAIGLSHGGSNVYSSPEHSQQLWVATKDGIVLIERAAHGQ
Ga0075425_1012808231	3300006854	Populus Rhizosphere	MAIGLSHGGNNVYSSNEPSRQLWVGTKDGLVLFERANDG
Ga0075426_112635252	3300006903	Populus Rhizosphere	MAVGLSHGGTNVYSSSERSQQLWVGTQDGLVLFERDANGG
Ga0075435_1016949351	3300007076	Populus Rhizosphere	MAVGLSHGGSNVYSAPERSRELWVATQDGVVLFERENGKWR
Ga0099791_105706182	3300007255	Vadose Zone Soil	MTVGLSHGGTNVYSSSERSQQLWVGTQDGLVLFERDTNGGWRESQRALRG
Ga0075418_117854982	3300009100	Populus Rhizosphere	MAIGLSHGGNNVYSSNEPSRQLWVGTKDGLVLFERTNDGRW
Ga0075423_120415702	3300009162	Populus Rhizosphere	MAVGLSHGGSNVYSSSERSRELWVATQDGVVLFERENGKWR
Ga0105061_10830932	3300009807	Groundwater Sand	MAIGLSHGGTNVYSASERSNQLWVGTQDGLVLFARANGRWREAERALRG
Ga0105084_10713002	3300009811	Groundwater Sand	MAIGLSHGGTNVYSASERSDQLWVGTQDGLVRFERTNG
Ga0134109_100432921	3300010320	Grasslands Soil	MAIGLSHGGSNVYSSSEQSRQLWVATKDGLVLLERLGDRAWRVSHR
Ga0126372_103185061	3300010360	Tropical Forest Soil	MAIGLSHGGNNVYTSNEPSRQLWVGTKDGLVLFERA
Ga0134066_103998412	3300010364	Grasslands Soil	MAIGLSHGGSNVYSSSEQSRQLWVATKDGLVLLERLGDRAWRVSH
Ga0126379_119747471	3300010366	Tropical Forest Soil	MAVGLSHGGSNVYSAREHSRELWVGSQDGLVLFER
Ga0134128_104076241	3300010373	Terrestrial Soil	MAIGLSHGGSNVYSSPERSRELWVGTQDGLVMFTRE
Ga0134126_125035662	3300010396	Terrestrial Soil	MAIGLSHGGSNIYSSDEQAGEVWVATKDGAVLLERE
Ga0134124_110149593	3300010397	Terrestrial Soil	MAIGLSHGGSNVYSSAERSNDLWVGTQDGLVHFERDGSGKWQEAQRAL
Ga0134124_111114902	3300010397	Terrestrial Soil	MAIGLSHGGSNVYSSTARSGELWVGTQDGLVLFERE
Ga0134127_112509001	3300010399	Terrestrial Soil	MAIGLSHGGSNVYSSTARSGELWVGTQDGLVLFEREDGGKWR
Ga0134123_100900413	3300010403	Terrestrial Soil	MAIGLSHGGTNVYSSTERSHQLWTGTQDGLALFERDNSGKWREAQRAL
Ga0137431_11840362	3300012038	Soil	MAIGLSHGGTNVYSAGERSNQLWVATQDGLVLFERAGIGQWREAQRALRGQHI
Ga0137421_10869602	3300012039	Soil	MAIGLSHGGTNVYSASERSDQLWVGTQDGIVRFERT
Ga0137327_11271181	3300012173	Soil	MAIGLSHGGTNVYSASERSDQLWVGTQDGLVLFARANGQWRETQRA
Ga0137382_101702213	3300012200	Vadose Zone Soil	MAIGLSHGGTNVYSSTERSHQLWAGTQDGLVLFEREKSGKWREAQRALRGQH
Ga0137382_107779381	3300012200	Vadose Zone Soil	MAIGLSHGGTNVYSSTERSHQLWAGTQDGLVLFEREKSGKWRAAQRALRGQHIS
Ga0137378_104917502	3300012210	Vadose Zone Soil	MAIGLSHGGSNVYSSSEQSRQLWVATKDGLVLLERLGDRAW
Ga0137465_11866682	3300012231	Soil	MAIGLSHGGSNVYAATERSRQLWVGTQDGLVLFERGAD
Ga0137369_106318022	3300012355	Vadose Zone Soil	MAIGLSHGGTNVYSSNEGSTQLWVGTQDGLVQFERESNGKWRE
Ga0137407_119000922	3300012930	Vadose Zone Soil	MAIGLSHGGNNVYSSNEPSRQLWVGTKDGLVLFERADDGRWREV
Ga0126375_114044401	3300012948	Tropical Forest Soil	MAIGLSHGGNNVYASNEPSRQLWVGTKDGLVLFERADNAKWR
Ga0164308_101091813	3300012985	Soil	MAIGLSHGGSNVYSSTARSGELWVGTQDGLVLFEREDGGKWRE
Ga0075321_10997062	3300014300	Natural And Restored Wetlands	MAIGLSHGGTNVYSAPERSRQLWVATQDGAVLFERDEQGKWREARRALKDQHISAIIFEPATQTMF
Ga0180074_10287301	3300014877	Soil	MAIGLSHGGTNVYSSKERARQLWVATKDGLVLYERMDGGKWRD
Ga0180094_10229431	3300014881	Soil	MAIGLSHGGTNVYSSPQYSRQLWVGTQDGLVLFEQADNGEWREGQRA
Ga0173480_112243351	3300015200	Soil	MAIGLSHGGTNVYSAGERSNQLWVATQDGLVLFERAGIGQWREAQRA
Ga0132256_1000166159	3300015372	Arabidopsis Rhizosphere	MAVGLSHGGSNVYSAPERSRELWVATQDGVVLFERENGKW
Ga0132257_1042043132	3300015373	Arabidopsis Rhizosphere	MAIGLSHGGTNVYSSTERSHQLWAGTQDGLVLFER
Ga0132255_1060962791	3300015374	Arabidopsis Rhizosphere	MAIGLSHGGTNVYTSTERSHQLWAGTQDGLVLFEREKSGKWREAQRS
Ga0182039_107746182	3300016422	Soil	MAVGLSHGGSNVYSSPEHSRELWVGSQDGLVLFERDGGGKWRE
Ga0184638_10065975	3300018052	Groundwater Sediment	MATGLSHGGTNVYSSKERSRQLWVGTQDGLVLFERGDN
Ga0184621_101656271	3300018054	Groundwater Sediment	MATGLSHGGTNVYSSKERSRQLWVATQDGLVLFERGDNGQWREAQRALRGQHIS
Ga0184618_100095521	3300018071	Groundwater Sediment	MAVGLSHGGTNVYSSSERSTQLWVGTKDGLVQCERGSNGKWAVAHRALR
Ga0184612_102657682	3300018078	Groundwater Sediment	MAIGLSHGGSNVYAATERSRQLWVGTQDGLVLFERGNNGWRE
Ga0190265_108533982	3300018422	Soil	MAIGLSHGGTNVYSAPRRSRELWIATQDGLALFERGENGKWRES
Ga0066667_116792541	3300018433	Grasslands Soil	MAVGLSHGGTNVYSSSERSQQLWVGTQDGLVLFERDTNGGWRESSPAL
Ga0190270_106537951	3300018469	Soil	MAIGLSHGGSNVYASTERSRQLWVGTQDGLVLFERGAD
Ga0190270_134281322	3300018469	Soil	MAIGLSHGGSNVYAATERSRQLWVGTQDGLVLFERGADGWREA
Ga0193723_10811122	3300019879	Soil	MAVGLSHGGTNVYSSSERSKQLWVGTQDGLVLFER
Ga0193717_12149242	3300020060	Soil	MAIGLSHGGTNVYSAKDHSGKLWVGTQDGLVLFERGKDDQWREAQRALKG
Ga0194128_100424965	3300020197	Freshwater Lake	MAIGLSHGGSNVYLAPERSRQLWVGTQDGIVLFERNSDGWREAQ
Ga0210380_100119291	3300021082	Groundwater Sediment	MAIGLSHGGTNVYSAGERSKQLWVATQDGLALFERGNAGWRETQRALRGQHISAII
Ga0126371_132393542	3300021560	Tropical Forest Soil	MAIGLSHGGNNVYTSTEPSRQLWIGTTDGLLLFERANDAR
Ga0247794_103186342	3300024055	Soil	MAIGLSHGGSNVYSSPERSRELWVGTQDGLVMFTREDSVNWREA
Ga0209320_100206491	3300025155	Soil	MAIGLSHGGTNVYSSKERARQLWVATKDSVVLFER
Ga0209399_100534041	3300025157	Thermal Springs	MAIGLSHGGSNVYSSPSPSDQVWVGTKDGMVLIER
Ga0209619_101114632	3300025159	Soil	MAIGLSHGGTNVYSSKERARQLWVATKDSVVLFERVNGGKWR
Ga0209109_100776103	3300025160	Soil	MAIGLSHGGTNVYSSKERARQLWIATKDGLVLYERVNGG
Ga0209109_102676082	3300025160	Soil	MAIGLSHGGTNVYSSKERARQLWVATKDGVVLFERVNGGKWREAQRALRG
Ga0209108_101729992	3300025165	Soil	MAIGLSHGGTNVYSSKERTRQLWAATKDGVVLFERAGRGKWQ
Ga0209002_106810061	3300025289	Soil	MAIGLSHGGSNVYSSGERSNQLSVATQDGLVLFERADGGR
Ga0209343_101339071	3300025311	Groundwater	MAIGLSHGGTNVYSSKERARQLWVATKDSVVLFERVNGGKWRETRRAL
Ga0209519_105066361	3300025318	Soil	MAIGLSHGGTNVYSSKERTRQLWAATKDGVVLFERAERGKWQEAR
Ga0209641_107404372	3300025322	Soil	MAIGLSHGGTNVYSSKERARQLWVATKDGVVLFERVNGGKW
Ga0210103_10319913	3300025968	Natural And Restored Wetlands	MAIGLSHGGTNVYSAGERSNQLWVATQDGLVRFERAGKGQW
Ga0208777_10048561	3300025996	Rice Paddy Soil	MAIGLSHGGTNVYLASAPSRELWAATQDGLVLFERNANGKWLESRRALRGEHISSIIFEP
Ga0209472_11073091	3300026323	Soil	MAVGLSHGGTNVYSSSERSQQLWVATQDGLVLFERDTNGGWRESQRALRGQHISAI
Ga0256814_10444051	3300026464	Sediment	MAIGLSHGGTNVYSAGERSKQLWVATQDGLVLFERGSDGWQEAQRA
Ga0209968_10490072	3300027526	Arabidopsis Thaliana Rhizosphere	MAIGLSHGGTNVYSASTPSRELWAATQDGLVLFERDTSGKWQ
Ga0209982_10796322	3300027552	Arabidopsis Thaliana Rhizosphere	MAIGLSHGGTNVYSASTPSRELWAATQDGLVLFERDTSGKWQES
Ga0209073_101257501	3300027765	Agricultural Soil	MAIGLSHGGSNVYSSAERSGELWVGTQDGLVMFTRDDGGHW
Ga0209283_102367041	3300027875	Vadose Zone Soil	MAIGLSHGGSNVYASAGRPRQVWVATQDGLVLLERADGAA
Ga0207428_108768362	3300027907	Populus Rhizosphere	MAIGLSHGGNNVYSSNEPSRQLWVGTKDGLVLFERTD
Ga0207428_110381522	3300027907	Populus Rhizosphere	MAIGLSHGGSNVYSSTARSGELWVGTQDGLVLFEREDGGKWREA
Ga0209705_105988471	3300027979	Freshwater Sediment	MAIGLSHGGTNVYSAANHSRQLWVGTQDGLVLFER
Ga0307305_102381711	3300028807	Soil	MAVGLSHGGTNVYSSSERSKQLWVGTQDGLVLFERDTNGGWRESQ
Ga0299914_103388851	3300031228	Soil	MAIGLSHGGTNVYSAAARSRQLWVATQDGLVLLERESGGRWRETGRA
Ga0299913_103006791	3300031229	Soil	MAIGLSHGGTNVYSGPEPSRQLWVATQDGLVLFERGE
Ga0307469_102007913	3300031720	Hardwood Forest Soil	MAIGLSHGGTNVYSSTERSHQLWAGTQDGLVLFERE
Ga0307468_1021480831	3300031740	Hardwood Forest Soil	MAIGLSHGGTNVYSASERSKDLWVGTQDGLVRFQRSGNGKWQEAQRALR
Ga0310907_106215871	3300031847	Soil	MAIGLSHGGTNVYSSTERSHQLWAGTQDGLVLFEREKSGKWREAQRSLRGQ
Ga0310904_103115481	3300031854	Soil	MAIGLSHGGTNVYSADERSYQLWVATQDGLVLFERDGG
Ga0326726_124657791	3300033433	Peat Soil	MAIGLSHGGTNVYSASERSKQLWVSTQEGLVLIERASDGRR
Ga0364935_0060644_3_110	3300034151	Sediment	MTIGLSHGGTNVYSSGETPRQLWVGTQDGLVLFERA

Hidden Markov Model


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