Metagenome / Metatranscriptome Family F093916

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093916
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	55 residues
Representative Sequence	MSQAFDEMLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPV
Number of Associated Samples	85
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	41.35 %
% of genes near scaffold ends (potentially truncated)	91.51 %
% of genes from short scaffolds (< 2000 bps)	94.34 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.321 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (23.585 % of family members)
Environment Ontology (ENVO)	Unclassified (30.189 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.623 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.57% β-sheet: 0.00% Coil/Unstructured: 54.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01636	APH	7.55
PF12680	SnoaL_2	7.55
PF00903	Glyoxalase	4.72
PF00583	Acetyltransf_1	2.83
PF12681	Glyoxalase_2	2.83
PF05621	TniB	1.89
PF00378	ECH_1	1.89
PF01370	Epimerase	1.89
PF00561	Abhydrolase_1	0.94
PF03009	GDPD	0.94
PF00083	Sugar_tr	0.94
PF01047	MarR	0.94
PF08734	GYD	0.94
PF01872	RibD_C	0.94
PF04679	DNA_ligase_A_C	0.94
PF13424	TPR_12	0.94
PF04672	Methyltransf_19	0.94
PF00313	CSD	0.94
PF01850	PIN	0.94
PF00589	Phage_integrase	0.94
PF06078	DUF937	0.94
PF08922	DUF1905	0.94
PF00255	GSHPx	0.94
PF01243	Putative_PNPOx	0.94
PF01042	Ribonuc_L-PSP	0.94
PF00440	TetR_N	0.94
PF01478	Peptidase_A24	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.94
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.94
COG0386	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	Defense mechanisms [V]	0.94
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	0.94
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.94
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.94
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.94
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.32 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	53.77 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	52.83 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	46.23 %
Unclassified	root	N/A	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	7.55 %
Actinopolysporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales	1.89 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.89 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.89 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.94 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.94 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	6.60 %
Actinopolysporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales → Actinopolysporaceae	1.89 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.89 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.94 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.94 %
Catenulisporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae	0.94 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.94 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	1.89 %
Actinopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales → Actinopolysporaceae → Actinopolyspora	1.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.94 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.94 %
Catenulispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora	0.94 %
Phycicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus	0.94 %
Planobispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora	0.94 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	0.94 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.94 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Actinopolyspora mzabensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales → Actinopolysporaceae → Actinopolyspora → Actinopolyspora mzabensis	1.89 %
Micromonospora globispora	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora globispora	1.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.94 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.94 %
unclassified Phycicoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus	0.94 %
unclassified Catenulispora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → unclassified Catenulispora	0.94 %
Planobispora rosea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora rosea	0.94 %
Streptosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	0.94 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.94 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.68 %
Actinopolyspora mzabensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales → Actinopolysporaceae → Actinopolyspora → Actinopolyspora mzabensis	1.89 %
Micromonospora globispora	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora globispora	1.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Catenulispora sp. 13_1_20CM_3_70_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → unclassified Catenulispora → Catenulispora sp. 13_1_20CM_3_70_7	0.94 %
Phycicoccus sp. HDW14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. HDW14	0.94 %
Pseudonocardia sp. EC080625-04	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. EC080625-04	0.94 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.94 %
Planobispora rosea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora rosea	0.94 %
Streptosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	0.94 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.94 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10641243	Not Available	505	Open in IMG/M
3300005434\|Ga0070709_10936493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	686	Open in IMG/M
3300005435\|Ga0070714_100338122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1411	Open in IMG/M
3300005436\|Ga0070713_100474729	Not Available	1177	Open in IMG/M
3300005436\|Ga0070713_100630826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1020	Open in IMG/M
3300005437\|Ga0070710_10289560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1065	Open in IMG/M
3300005437\|Ga0070710_11039072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	599	Open in IMG/M
3300005439\|Ga0070711_100371322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1154	Open in IMG/M
3300005439\|Ga0070711_101285345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora globispora	635	Open in IMG/M
3300005467\|Ga0070706_100010550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8575	Open in IMG/M
3300005518\|Ga0070699_100888144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	816	Open in IMG/M
3300005535\|Ga0070684_100290205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1500	Open in IMG/M
3300005535\|Ga0070684_100360625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1338	Open in IMG/M
3300005536\|Ga0070697_100382559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1219	Open in IMG/M
3300005602\|Ga0070762_10905099	Not Available	601	Open in IMG/M
3300005712\|Ga0070764_10363482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	848	Open in IMG/M
3300005712\|Ga0070764_10567463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	689	Open in IMG/M
3300005764\|Ga0066903_100785693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales → Actinopolysporaceae → Actinopolyspora → Actinopolyspora mzabensis	1699	Open in IMG/M
3300005764\|Ga0066903_100981896	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300006028\|Ga0070717_10800359	Not Available	857	Open in IMG/M
3300006028\|Ga0070717_10803913	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300006028\|Ga0070717_10883784	Not Available	813	Open in IMG/M
3300006028\|Ga0070717_10964420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	776	Open in IMG/M
3300006358\|Ga0068871_102401828	Not Available	503	Open in IMG/M
3300006854\|Ga0075425_102522199	Not Available	569	Open in IMG/M
3300006871\|Ga0075434_101161028	Not Available	785	Open in IMG/M
3300006914\|Ga0075436_100272211	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300009792\|Ga0126374_11712153	Not Available	523	Open in IMG/M
3300010046\|Ga0126384_12018870	Not Available	552	Open in IMG/M
3300010048\|Ga0126373_12218061	Not Available	610	Open in IMG/M
3300010358\|Ga0126370_11195018	Not Available	707	Open in IMG/M
3300010360\|Ga0126372_12285023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinopolysporales → Actinopolysporaceae → Actinopolyspora → Actinopolyspora mzabensis	590	Open in IMG/M
3300010373\|Ga0134128_10830457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1024	Open in IMG/M
3300010396\|Ga0134126_12988771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	511	Open in IMG/M
3300012198\|Ga0137364_10109450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1957	Open in IMG/M
3300012208\|Ga0137376_11244205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	634	Open in IMG/M
3300012357\|Ga0137384_10738735	Not Available	798	Open in IMG/M
3300012361\|Ga0137360_10205777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1595	Open in IMG/M
3300012989\|Ga0164305_11206451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	656	Open in IMG/M
3300016341\|Ga0182035_11991805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	528	Open in IMG/M
3300016422\|Ga0182039_11664661	Not Available	583	Open in IMG/M
3300017932\|Ga0187814_10391894	Not Available	540	Open in IMG/M
3300017942\|Ga0187808_10428968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	607	Open in IMG/M
3300017972\|Ga0187781_10155084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1608	Open in IMG/M
3300019887\|Ga0193729_1179509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	741	Open in IMG/M
3300020582\|Ga0210395_11061195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	599	Open in IMG/M
3300020583\|Ga0210401_10917743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	734	Open in IMG/M
3300020583\|Ga0210401_11486211	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300021401\|Ga0210393_10274929	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1367	Open in IMG/M
3300021420\|Ga0210394_11168829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	661	Open in IMG/M
3300021433\|Ga0210391_10440030	Not Available	1023	Open in IMG/M
3300021478\|Ga0210402_11559452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora globispora	587	Open in IMG/M
3300022718\|Ga0242675_1037245	Not Available	767	Open in IMG/M
3300025898\|Ga0207692_10305352	Not Available	970	Open in IMG/M
3300025906\|Ga0207699_10481003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	894	Open in IMG/M
3300025910\|Ga0207684_10028350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. EC080625-04	4770	Open in IMG/M
3300025915\|Ga0207693_10937778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	663	Open in IMG/M
3300025916\|Ga0207663_10743237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	779	Open in IMG/M
3300025916\|Ga0207663_11659818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	514	Open in IMG/M
3300025922\|Ga0207646_10877085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	797	Open in IMG/M
3300025928\|Ga0207700_10934800	Not Available	776	Open in IMG/M
3300025928\|Ga0207700_11007415	Not Available	745	Open in IMG/M
3300025928\|Ga0207700_11078265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	718	Open in IMG/M
3300025928\|Ga0207700_11920103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	518	Open in IMG/M
3300025929\|Ga0207664_10478006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1114	Open in IMG/M
3300025929\|Ga0207664_10926072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	782	Open in IMG/M
3300026035\|Ga0207703_11687544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	609	Open in IMG/M
3300027496\|Ga0208987_1002990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2684	Open in IMG/M
3300027879\|Ga0209169_10512471	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300027884\|Ga0209275_10622962	Not Available	620	Open in IMG/M
3300028759\|Ga0302224_10412353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300028784\|Ga0307282_10182723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1000	Open in IMG/M
3300028877\|Ga0302235_10187880	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300029943\|Ga0311340_11207916	Not Available	608	Open in IMG/M
3300029944\|Ga0311352_11277900	Not Available	555	Open in IMG/M
3300030524\|Ga0311357_10380049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → unclassified Catenulispora → Catenulispora sp. 13_1_20CM_3_70_7	1337	Open in IMG/M
3300030580\|Ga0311355_10129525	All Organisms → cellular organisms → Bacteria	2749	Open in IMG/M
3300030618\|Ga0311354_10956707	Not Available	793	Open in IMG/M
3300031090\|Ga0265760_10236238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300031573\|Ga0310915_10464172	Not Available	900	Open in IMG/M
3300031708\|Ga0310686_112267665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	959	Open in IMG/M
3300031715\|Ga0307476_10499573	Not Available	901	Open in IMG/M
3300031715\|Ga0307476_10522574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	880	Open in IMG/M
3300031718\|Ga0307474_10384885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1090	Open in IMG/M
3300031769\|Ga0318526_10453885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	524	Open in IMG/M
3300031845\|Ga0318511_10045037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. HDW14	1749	Open in IMG/M
3300031910\|Ga0306923_10722022	Not Available	1107	Open in IMG/M
3300032001\|Ga0306922_11327832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	726	Open in IMG/M
3300032001\|Ga0306922_12179415	Not Available	535	Open in IMG/M
3300032008\|Ga0318562_10747925	Not Available	561	Open in IMG/M
3300032043\|Ga0318556_10371650	Not Available	748	Open in IMG/M
3300032054\|Ga0318570_10418646	Not Available	611	Open in IMG/M
3300032074\|Ga0308173_11117850	Not Available	735	Open in IMG/M
3300032076\|Ga0306924_11196052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	823	Open in IMG/M
3300032090\|Ga0318518_10726330	Not Available	505	Open in IMG/M
3300032261\|Ga0306920_103667304	Not Available	564	Open in IMG/M
3300032770\|Ga0335085_11713243	Not Available	647	Open in IMG/M
3300032783\|Ga0335079_11881084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	580	Open in IMG/M
3300032828\|Ga0335080_10611390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Planobispora → Planobispora rosea	1145	Open in IMG/M
3300032828\|Ga0335080_11222330	Not Available	754	Open in IMG/M
3300032898\|Ga0335072_10979371	Not Available	779	Open in IMG/M
3300032898\|Ga0335072_11113646	Not Available	711	Open in IMG/M
3300033134\|Ga0335073_11792854	Not Available	574	Open in IMG/M
3300034163\|Ga0370515_0280068	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.28%
Host-Associated	Host-Associated	4.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.40%
Plants	Host-Associated → Plants	4.72%
Aquatic	Environmental → Aquatic	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.79%
Peat	Environmental → Terrestrial → Peat	6.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.83%
Freshwater	Environmental → Aquatic → Freshwater	1.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.51%
Loam	Environmental → Terrestrial → Soil → Loam	36.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.49%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	28.30%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.04%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.49%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.49%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	23.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.60%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.60%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027496	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_106412431	3300001661	Forest Soil	MAPIVYPMKRESKGMLSPTPHYYEINGRAAEIARSL
Ga0070709_109364932	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSQAFDEMLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVHVLSRLVDS
Ga0070714_1003381223	3300005435	Agricultural Soil	MLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVHVLSRLVDSG
Ga0070713_1004747292	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VRMGLVFDRTVSPTAHYYMIKGRAAEIARSLGSPVGGPEHMFLAMLHDGGWP
Ga0070713_1006308263	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSQAFDEMLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGG
Ga0070710_102895601	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSLVPDRAISPTPHYYEIRGRAAEIARSFGSPVGGPEHMFLAMLHDGGWPVSVIS
Ga0070710_110390721	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MEPAPEGMLSPNPHYYEIMGRAAEIARALGSPAGAAEHLFLGMLHDGEWPVNVISRLVDPGRAEAA
Ga0070711_1003713223	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSQAFDEMLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVHVLSRLVDSGQAE
Ga0070711_1012853452	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSQAFDEMLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDG
Ga0070706_1000105504	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSGAYHVPMSQAFDRALSPTPHYYEIKGRAAEIARVLGSPAGGAEHLFLGMLHDGGGP*
Ga0070699_1008881441	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VPMGLVFDRTVSPTAHYYMIKGRAAEIARSLGSPVGGPEHMFLAMLHDGGWPVTVISPLLDLAQAEA
Ga0070684_1002902053	3300005535	Corn Rhizosphere	MSLVPDRAISPTPHYYEIRGRAAEIARSFGSPVGGPEHMFLAMLHDGGWPVSVISPLADLAQAEEAV
Ga0070684_1003606252	3300005535	Corn Rhizosphere	VRMGLVFDRTVSPTAHYYMIKGRAAEIARSLGSPVGGPEHMFLAMLHDGGWPVTVISPLL
Ga0070697_1003825595	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRQAFDGALSPTPHYYEIKGRAAEIARTLGSSVGGAEHLFLGMLHDGGW
Ga0070762_109050991	3300005602	Soil	VPVKAFDGALSPTPHYYEIMGRAAEIAHALGSPAGGAEHLFLGILHDG
Ga0070764_103634823	3300005712	Soil	MCVMRQALGGKLSLTPHYHEIRGRAAEIARALGSSIGGAEHLFLGMLHDGGWPV
Ga0070764_105674631	3300005712	Soil	MAPIMCPVGRESEGMLSPTPHYYEITGRATEIAWALGSPAGGAEHLFLGM
Ga0066903_1007856934	3300005764	Tropical Forest Soil	MTGSYHVPMGRAFDRALSPDPHYCEIRGRAAEIARAVGSPVGGAEHLFLGMLHDGGWP
Ga0066903_1009818963	3300005764	Tropical Forest Soil	MTGAYPVPMGQAFNGALSPTPHYYEIQGRAAEIARALGSPVGGAEHLFLGCSTTAGGR*
Ga0070717_108003591	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MALPSDEAMSPTPHYYTIMGRAAEIARAHGSPLGGAEHLFLGMLHDGGWP
Ga0070717_108039132	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MALPSDEAMSPTPHYYTIMGRAAEIARAHGSPLGGAEHLFLGMLHDGGWPV
Ga0070717_108837842	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MALPSDEAMSPTPHYYTIMGRAAEIARAHGSPLGGAEH
Ga0070717_109644201	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSQAFDEMLSPTPHYYEIRGRAAEIARALGSPAGGAEHLF
Ga0068871_1024018282	3300006358	Miscanthus Rhizosphere	MALPSDEAMSPTPHYYTIMGRAAEIARAHGSPLGGAEHLFLGMLHDGGWPVSAISPLVDPGRAEEAVLAIM
Ga0075425_1025221992	3300006854	Populus Rhizosphere	MGQATDGTLSPNPHYYEVMGRAAEIARTLGSPVGGAEHFFLGMLHDGAWP
Ga0075434_1011610281	3300006871	Populus Rhizosphere	PMAQAADEAMSPPPHYYEIMGRAAEIARALGSPVGGAVDEN*
Ga0075436_1002722111	3300006914	Populus Rhizosphere	MAQAADEAMSPTPHYYEIMGRAAEIARALGSPVGGAEHLFLGMLHDGGGAVDEN*
Ga0126374_117121532	3300009792	Tropical Forest Soil	MGQAFDGALSPTPHYYEIQGRAAEIARALGSPVGEAEHLFLGMLHDGGWPVSAISRLVDLGQAEAAVLG
Ga0126384_120188701	3300010046	Tropical Forest Soil	MGRALDGTLSPDAHYYMIAGRAAEIAQAFGSQVGGAEHLFLAMLHDGNWPVSVVSSLIDLAQADKAVSEI
Ga0126373_119252822	3300010048	Tropical Forest Soil	MTGTYHVPMGRVVDEALSPNPHYYQIKGRAAEIARALGSPV
Ga0126373_122180611	3300010048	Tropical Forest Soil	MTGAYPVPMGQAFNGALSPTPHYYEIQGRAAEIARALGSPVG
Ga0126370_111950182	3300010358	Tropical Forest Soil	MTGAYHVPVGQPADETLSPNPHYYVIQGRAAEIARTLGHPVGGSEHLFLGMLH
Ga0126372_122850232	3300010360	Tropical Forest Soil	MTGSYHVPMGRPFDRELSPDPHYCEIRGRAAEIARALGSPAGGAEHLFLWMLHDGGW
Ga0134128_108304572	3300010373	Terrestrial Soil	MSQAFDEMLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVHVLSHLVDSG*
Ga0134126_129887712	3300010396	Terrestrial Soil	MLSPTPHYYEIRGRTAEIARASGSPAGGAEHLFLAMLHDGGWPVNVISQLVDSGRAEEA
Ga0137364_101094503	3300012198	Vadose Zone Soil	MRQAFDGALSPTPHYYGIEGRAAEIARARGSSVGGAEHLFLGMLHDGGWPVNVISGLVDLGRPLPPEY*
Ga0137376_112442051	3300012208	Vadose Zone Soil	MSGAYHVPMRQAFDGALSPTPHYYGIEGRAAEIARAHGSSVGG
Ga0137384_107387351	3300012357	Vadose Zone Soil	MRQASDGTLSPTPHYYAIMGRAAEIARALGSPVGGAEHL
Ga0137360_102057771	3300012361	Vadose Zone Soil	MGQAFDGALSPTAHYYQIQGRAAEIARTAGSPVAGAEHLFLAMLHDGGWPVNVISGLADLGRAEVAVLGILN
Ga0164305_112064512	3300012989	Soil	MSLVPDRAISPTPHYYEIRGRAAEIARSFGSPVGGPEHMFLAMLH
Ga0182035_119918051	3300016341	Soil	MGQAFDGALSPTPHYYEIQGRAAEIARALGSPVGGAEHLFLGMLHGGGWPVSVISGLVDLGQA
Ga0182039_116646612	3300016422	Soil	MGQAFDGALSPTPHYYEIQGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVNVISGLVDLGRA
Ga0187814_103918941	3300017932	Freshwater Sediment	MGHAFDGALSPNPHYYELRGRAAEIARALGSHVGGAEHLFLGMLHDGGWPVSVISGLVDLGQAEA
Ga0187808_104289681	3300017942	Freshwater Sediment	MSGTYHLPMRQAPEGALSPTPHYCEIRGRAAEIARALGSPVGVAEHLFLGMLHDGG
Ga0187781_101550841	3300017972	Tropical Peatland	MMLSPTPHYYQIMGRAAEIARAVGSSFGDAEHLFLGMLHDGGWPMNVISRMVD
Ga0193729_11795091	3300019887	Soil	MSQAFDGVLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVHALSRLVDP
Ga0210395_110611952	3300020582	Soil	MAPIVYPMEGESKGMLSPTPHYYEINGRAAEIARGLGSRVAGAEHLFLAMLHDGGWPV
Ga0210401_109177431	3300020583	Soil	MAPIMCPVGRESEGMLSPTPHYYEIRGRSAEIARALGSPVGGAEHLFLALLHDGG
Ga0210401_114862112	3300020583	Soil	MAVPIMCVMRQALGGKLSLTPHYHEIRGRAAEIARALGSLISGAEHLFL
Ga0210393_102749292	3300021401	Soil	MAPIMCPVGRESEGMLSPTPHYYEIRGRSAEIARALGSPVGGAEHLFLALLHDGGWPLNAVSGLVD
Ga0210394_111688291	3300021420	Soil	MAPIMCPVGRESEGMLSPTPHYYEIRGRSAEIARALGSPVGGAEHLFLALLHDGGWPLNAVSGLVDLARAEA
Ga0210391_104400301	3300021433	Soil	MLRPTPRYYELRGRAAEIARNMGAGQAAAEHFFLAMLHDGGWPVSVL
Ga0210402_115594522	3300021478	Soil	MSQAFDGVLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVHVLSRLVDPGRAEA
Ga0242675_10372451	3300022718	Soil	MLSPTPHYYMVEGRAAEIARALGSPIGGAEHLFLGMLHDG
Ga0207692_103053522	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSLVPDRAISPTPHYYEIRGRAAEIARSFGSPVGGPEHMFLAMLHDGGWPVSVISPLADLAQAE
Ga0207699_104810033	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSQAFDEMLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVHVLSRLVDSGQA
Ga0207684_100283505	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSGAYHVPMSQAFDRALSPTPHYYEIKGRAAEIARVLGSPAGGAEHLFLGMLHDGGGP
Ga0207693_109377782	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSQAFDEMLSPTPHYYEIRGRAAEIARALGSPAGGAEH
Ga0207663_107432371	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSQAFDEMLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPV
Ga0207663_116598182	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSQAFDGVLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVHA
Ga0207646_108770852	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSQAFDEVLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVSALSRLVDPGRAE
Ga0207700_109348002	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MALPSDEAMSPTPHYYTIMGRAAEIARAHGSPLGGAEHLFLGM
Ga0207700_110074151	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MALPSDEAMSPTPHYYTIMGRAAEIARAHGSPLGGAEHLFLGMLHDGGWPVSAISPLVDPGRAEEAVLGIMRD
Ga0207700_110782651	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MAPIMWLMGRELDGMLSPNPHYYEIRGRAAEMARALGSPAGGAEHLFLG
Ga0207700_119201032	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MGLVFDGTVSPTPHYYMIEGRAAEIARSLGSPVGGPEHMFLAMLHDGGWPVNVISPL
Ga0207664_104780063	3300025929	Agricultural Soil	MALPSDEAMSPTPHYYTIMGRAAEIARAHGSPLGGAEHLFLGMLHDGGWPVSAISPLVDPGRAEEAVLAIMRD
Ga0207664_109260721	3300025929	Agricultural Soil	MSQAFDEMLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVHVLSRL
Ga0207703_116875442	3300026035	Switchgrass Rhizosphere	MGLVFDRTVSPTAHYYMIKGRAAEIARSLGSPVGGPEHMFLAMLHDGGWPVTVISPLLDLAQ
Ga0208987_10029901	3300027496	Forest Soil	MLSPTPHYYEINGRAAEIARSLGSRVGGAEHLFLAMLHDGGWPVSAISGLVDLARAEAA
Ga0209169_105124711	3300027879	Soil	MCVMRQALGGKLSLTPHYHEIRGRAAEIARALGSSIGGAEHLFLGMLHDGGWPVSAISGLVDLARA
Ga0209275_106229621	3300027884	Soil	VPVKAFDGALSPTPHYYEIMGRAAEIAHALGSPAGGAEHLFLGILHD
Ga0302224_104123531	3300028759	Palsa	MGRVFDGVLSPNPHYYLIMGRAAEIARALGSPAGGAEHLFLGMLHDGRWPVNVISPLVDLGH
Ga0307282_101827231	3300028784	Soil	VVSGAYHVPMGQAFAGALSPTAHYYQIQGRAAEIARAAGSPVAGAEHLFLAMLHDGGWPVNVISGLADLGRAEVAV
Ga0302235_101878801	3300028877	Palsa	MCPMRRESKGSLSPTPHYYEMMGRAAEVARALGSPVGGAEHLFLGMLHDGGWPVSVVSGLVDLARAEA
Ga0311340_112079162	3300029943	Palsa	MCPMRRESKGSLSPTPHYYEIMGRAAEVARALGSPVGGAEHLFLGMLHDGGWPVSVVSGL
Ga0311352_112779002	3300029944	Palsa	MVSPNPHYYEIRGRAAEIARAAGSPAGGAEHLFLGMLHDGGWPV
Ga0311357_103800492	3300030524	Palsa	MLSPTPHYHEIMGRAAEIARALGSPVGGAEHLFLGMLHDGGWPVSVI
Ga0311355_101295253	3300030580	Palsa	MCPMRRESKGSLSPTPHYYEIMGRAAEVARALGSPVGGAEHLFLGMLHDGGWPVSVISGL
Ga0311354_109567072	3300030618	Palsa	MVSPNPHYYEIRGRAAEIARAAGSPAGGAEHLFLGMLHDGGWPVSVIS
Ga0265760_102362381	3300031090	Soil	MLSPTPHYYEIRGRAAEIARALGSPVGGAEHLFLAMLHDGGWPVSVISHLVDLGHAEA
Ga0310915_104641721	3300031573	Soil	MARASEGALSPNPHYYEIMGRAAEIARALGSPVGGAEHLFLGMLHDGGWPVSAIS
Ga0310686_1122676651	3300031708	Soil	MAPSMYRMGRESDGMLSPTPHYYEIRGRAAEIARASGSPAGGAEHLFLGMLHDGGWPVNAVS
Ga0307476_104995731	3300031715	Hardwood Forest Soil	MGQESKGSMSPTPHYYVIQGRAAEIALASGSPDVGAEHMFLAMLHDGGWPVDVISGLVDLARAETA
Ga0307476_105225743	3300031715	Hardwood Forest Soil	MSQAFDGVLSPTPHYHEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVHALSRL
Ga0307474_103848851	3300031718	Hardwood Forest Soil	MSQAFDGVLSPTPHYYEIRGRAAEIARALGSPAGGAEHPFLGMLHDGGWPVRVLSRLVDSGQAE
Ga0307474_115489311	3300031718	Hardwood Forest Soil	VNRGVYPVPMGHAFDGALSPNPHYYEIRGRAAEIARA
Ga0318526_104538852	3300031769	Soil	MGQAFDGALSPTPHYYEIQGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVNGLCREFCDPG
Ga0318511_100450371	3300031845	Soil	MARASEGALSPNPHYYEIMGRAAEIARALGSPVGGAEHLFLGMLHDGGWPVSA
Ga0306923_107220221	3300031910	Soil	MARASEGALSPNPHYYEIMGRAAEIARALGSPVGGAEHLFLGMLHDGGWPVSAISGLVDLARAE
Ga0306922_113278322	3300032001	Soil	MGQAFDGALSPTPHYYEIQGRAAEIARALGSPAGGAEHLFL
Ga0306922_121794151	3300032001	Soil	MERASDGALSPTPHYYEIMGRAAEIARALGSPVGGAEHLF
Ga0318562_107479251	3300032008	Soil	MERASDGALSPTPHYYEIMGRAAEIARALGSPVGGAEHLFLGMLHDGGWPVSVISGLV
Ga0318556_103716502	3300032043	Soil	MARASEGALSPNPHYYEIMGRAAEIARALGSPVGGAEHLFLGMLHDGGWPVTAISG
Ga0318570_104186462	3300032054	Soil	MSGAYHVAMSQASDGALSPTPHYYEIKGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVK
Ga0308173_111178501	3300032074	Soil	MALPSDEAMSPTPHYYTIMGRAAEIARTLGSPLGGAEHLFLGMLHDGG
Ga0306924_111960521	3300032076	Soil	MERASDGALSPTPHYYEIMGRAAEIARALGSPVGGAEHLFLGMLHDGGWPVSAISGLVDLARA
Ga0318518_107263301	3300032090	Soil	MERASDGALSPTPHYYEIMGRAAEIARALGSPVGGAEHLFLAMLH
Ga0306920_1036673041	3300032261	Soil	MERASDGALSPNPLYYEIKGRAAEIARALGSPVGGA
Ga0335085_117132431	3300032770	Soil	MSPTPHYYTIMGRAAEIARTLGSPIGGAEHLFLAMLHDGGWPV
Ga0335079_118810841	3300032783	Soil	MTGTYRMLMGRAFDGTLSPNPHYYEIKGRAAEIARALGSPVGGAEHLFLA
Ga0335080_106113902	3300032828	Soil	MSQAFDGVLSPTPHYYEIRGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVHVLSRLV
Ga0335080_112223303	3300032828	Soil	MTGTYRMLMGRAFDGTLSPNPHYYEIKGRAAEIARALGSPVGGAEHLFLAMLHDGG
Ga0335072_109793711	3300032898	Soil	MGQASDGVLSPTPHYYQLQGRAAEIARALGSPAGGAEHLFLGMLHDGGWPVSVIS
Ga0335072_111136461	3300032898	Soil	MGRERDEMLSPNPHYYEIRGRAAEIARALGSPVGAAEHLFLGMLHDGGWP
Ga0335073_117928542	3300033134	Soil	MLSLTPHYYEVRGRAAEIARSTGSGPVAAEHLFLAMLHDDGWP
Ga0370515_0280068_516_704	3300034163	Untreated Peat Soil	MRPMRRECKGMLSPTPHYYQIMGRTAEIARASGNPTGGAEHLFLAMLHDGGWPVSAISGLVDL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093916

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences