Metagenome / Metatranscriptome Family F093898

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F093898
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	48 residues
Representative Sequence	MMRFLVARAVNPQLSLLDGLRDWNGIAAALREPPRKRRRYQGDDLDQFLS
Number of Associated Samples	94
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	58.49 %
% of genes near scaffold ends (potentially truncated)	21.70 %
% of genes from short scaffolds (< 2000 bps)	89.62 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (91.509 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment (9.434 % of family members)
Environment Ontology (ENVO)	Unclassified (18.868 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (20.755 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.49% β-sheet: 0.00% Coil/Unstructured: 70.51%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01609	DDE_Tnp_1	84.91
PF07729	FCD	0.94
PF04255	DUF433	0.94
PF08240	ADH_N	0.94
PF05368	NmrA	0.94
PF02796	HTH_7	0.94
PF02954	HTH_8	0.94
PF08668	HDOD	0.94
PF01066	CDP-OH_P_transf	0.94
PF13006	Nterm_IS4	0.94
PF00589	Phage_integrase	0.94
PF06961	DUF1294	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	84.91
COG3293	Transposase	Mobilome: prophages, transposons [X]	84.91
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	84.91
COG5421	Transposase	Mobilome: prophages, transposons [X]	84.91
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	84.91
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	84.91
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.94
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.94
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.94
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.94
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.94
COG3326	Uncharacterized membrane protein YsdA, DUF1294 family	Function unknown [S]	0.94
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.51 %
Unclassified	root	N/A	8.49 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.51 %
Unclassified	root	N/A	8.49 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.51 %
Unclassified	root	N/A	8.49 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	88.68 %
Unclassified	root	N/A	8.49 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	36.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	14.15 %
Unclassified	root	N/A	8.49 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.94 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	35.85 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	12.26 %
Unclassified	root	N/A	8.49 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.94 %

Name	Rank	Taxonomy	Distribution
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	35.85 %
Unclassified	root	N/A	8.49 %
Gallionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae	0.94 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.94 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.94 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.94 %

Name	Rank	Taxonomy	Distribution
Xanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	35.85 %
Unclassified	root	N/A	8.49 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.94 %
Candidatus Nitrotoga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga	0.94 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.94 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.49 %
Xanthomonas campestris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	6.60 %
Desulfatibacillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum	0.94 %
unclassified Candidatus Nitrotoga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → unclassified Candidatus Nitrotoga	0.94 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.94 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.49 %
Xanthomonas campestris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	6.60 %
Desulfatibacillum alkenivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum → Desulfatibacillum alkenivorans	0.94 %
Candidatus Nitrotoga sp. CP45	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → unclassified Candidatus Nitrotoga → Candidatus Nitrotoga sp. CP45	0.94 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.94 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_106348055	All Organisms → cellular organisms → Bacteria → Proteobacteria	1081	Open in IMG/M
3300002127\|JGI20164J26629_10038823	Not Available	1472	Open in IMG/M
3300002175\|JGI20166J26741_12044836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	727	Open in IMG/M
3300003858\|Ga0031656_10066592	All Organisms → cellular organisms → Bacteria → Proteobacteria	1382	Open in IMG/M
3300003858\|Ga0031656_10116807	Not Available	956	Open in IMG/M
3300004066\|Ga0055484_10038183	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300004180\|Ga0066408_1010331	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum → Desulfatibacillum alkenivorans	1449	Open in IMG/M
3300004779\|Ga0062380_10042276	All Organisms → cellular organisms → Bacteria → Proteobacteria	1503	Open in IMG/M
3300005471\|Ga0070698_100684928	All Organisms → cellular organisms → Bacteria → Proteobacteria	967	Open in IMG/M
3300005539\|Ga0068853_100049572	All Organisms → cellular organisms → Bacteria	3609	Open in IMG/M
3300005670\|Ga0074419_105887	All Organisms → cellular organisms → Bacteria → Proteobacteria	1574	Open in IMG/M
3300005829\|Ga0074479_10872336	All Organisms → cellular organisms → Bacteria → Proteobacteria	1555	Open in IMG/M
3300006046\|Ga0066652_101681915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	579	Open in IMG/M
3300006417\|Ga0069787_10601259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1406	Open in IMG/M
3300006930\|Ga0079303_10223157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	760	Open in IMG/M
3300006930\|Ga0079303_10424766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	566	Open in IMG/M
3300009075\|Ga0105090_10141878	All Organisms → cellular organisms → Bacteria → Proteobacteria	1500	Open in IMG/M
3300009085\|Ga0105103_10240035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	977	Open in IMG/M
3300009091\|Ga0102851_10543953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	1202	Open in IMG/M
3300009167\|Ga0113563_11895087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	710	Open in IMG/M
3300009167\|Ga0113563_13883907	Not Available	506	Open in IMG/M
3300009170\|Ga0105096_10009994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4530	Open in IMG/M
3300009180\|Ga0114979_10145962	All Organisms → cellular organisms → Bacteria → Proteobacteria	1449	Open in IMG/M
3300009527\|Ga0114942_1027713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1655	Open in IMG/M
3300009654\|Ga0116167_1057902	All Organisms → cellular organisms → Bacteria → Proteobacteria	1560	Open in IMG/M
3300009655\|Ga0116190_1171023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	758	Open in IMG/M
3300009664\|Ga0116146_1203878	All Organisms → cellular organisms → Bacteria → Proteobacteria	776	Open in IMG/M
3300009796\|Ga0105086_101103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → unclassified Candidatus Nitrotoga → Candidatus Nitrotoga sp. CP45	1050	Open in IMG/M
3300009805\|Ga0105079_1019814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	633	Open in IMG/M
3300009819\|Ga0105087_1019774	Not Available	964	Open in IMG/M
3300009839\|Ga0116223_10078271	All Organisms → cellular organisms → Bacteria → Proteobacteria	2115	Open in IMG/M
3300010313\|Ga0116211_1038120	All Organisms → cellular organisms → Bacteria → Proteobacteria	1380	Open in IMG/M
3300010344\|Ga0116243_10188395	All Organisms → cellular organisms → Bacteria → Proteobacteria	1393	Open in IMG/M
3300010366\|Ga0126379_12374838	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300012094\|Ga0136638_10100705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1260	Open in IMG/M
3300012174\|Ga0137338_1119414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	579	Open in IMG/M
3300012668\|Ga0157216_10272364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	783	Open in IMG/M
3300014319\|Ga0075348_1194710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	558	Open in IMG/M
3300014325\|Ga0163163_10212944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1981	Open in IMG/M
3300014874\|Ga0180084_1069517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	717	Open in IMG/M
3300015084\|Ga0167654_1018646	Not Available	1132	Open in IMG/M
3300015216\|Ga0182875_10057220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	522	Open in IMG/M
3300015240\|Ga0182876_10054740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	573	Open in IMG/M
3300018469\|Ga0190270_12525262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	576	Open in IMG/M
3300018481\|Ga0190271_10519331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1304	Open in IMG/M
3300018481\|Ga0190271_11244290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	866	Open in IMG/M
3300019377\|Ga0190264_12114897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	521	Open in IMG/M
3300019767\|Ga0190267_10310059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	824	Open in IMG/M
3300020063\|Ga0180118_1312465	All Organisms → cellular organisms → Bacteria → Proteobacteria	1570	Open in IMG/M
3300020214\|Ga0194132_10357420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	757	Open in IMG/M
3300022209\|Ga0224497_10074921	All Organisms → cellular organisms → Bacteria → Proteobacteria	1415	Open in IMG/M
3300024972\|Ga0208626_1015258	All Organisms → cellular organisms → Bacteria → Proteobacteria	1444	Open in IMG/M
3300025116\|Ga0209207_1030831	All Organisms → cellular organisms → Bacteria → Proteobacteria	1305	Open in IMG/M
3300025321\|Ga0207656_10573900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	575	Open in IMG/M
3300025605\|Ga0209720_1141030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	588	Open in IMG/M
3300025613\|Ga0208461_1171518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	511	Open in IMG/M
3300025638\|Ga0208198_1169186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	563	Open in IMG/M
3300026072\|Ga0208292_1012166	Not Available	1057	Open in IMG/M
3300026118\|Ga0207675_101511325	Not Available	692	Open in IMG/M
3300026349\|Ga0256811_1003003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1337	Open in IMG/M
3300027721\|Ga0209492_1240466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	615	Open in IMG/M
3300027763\|Ga0209088_10144444	Not Available	1056	Open in IMG/M
3300027831\|Ga0209797_10066834	All Organisms → cellular organisms → Bacteria → Proteobacteria	1588	Open in IMG/M
3300027831\|Ga0209797_10220625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	802	Open in IMG/M
3300027871\|Ga0209397_10038165	All Organisms → cellular organisms → Bacteria → Proteobacteria	1697	Open in IMG/M
3300027885\|Ga0209450_10049835	All Organisms → cellular organisms → Bacteria	2584	Open in IMG/M
3300027887\|Ga0208980_10163826	All Organisms → cellular organisms → Bacteria → Proteobacteria	1302	Open in IMG/M
3300027887\|Ga0208980_10351273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	853	Open in IMG/M
3300027897\|Ga0209254_10118488	All Organisms → cellular organisms → Bacteria → Proteobacteria	2201	Open in IMG/M
3300027897\|Ga0209254_10140518	All Organisms → cellular organisms → Bacteria → Proteobacteria	1987	Open in IMG/M
3300027897\|Ga0209254_10235075	All Organisms → cellular organisms → Bacteria → Proteobacteria	1441	Open in IMG/M
3300027900\|Ga0209253_10096850	All Organisms → cellular organisms → Bacteria → Proteobacteria	2419	Open in IMG/M
3300027900\|Ga0209253_10327999	All Organisms → cellular organisms → Bacteria → Proteobacteria	1181	Open in IMG/M
3300027900\|Ga0209253_11157067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	522	Open in IMG/M
3300027902\|Ga0209048_11045872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	519	Open in IMG/M
3300027904\|Ga0209737_10009064	All Organisms → cellular organisms → Bacteria → Proteobacteria	7342	Open in IMG/M
3300027905\|Ga0209415_10246948	All Organisms → cellular organisms → Bacteria → Proteobacteria	1610	Open in IMG/M
3300027975\|Ga0209391_10363511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	562	Open in IMG/M
3300028420\|Ga0210366_10025853	All Organisms → cellular organisms → Bacteria → Proteobacteria	1771	Open in IMG/M
3300028792\|Ga0307504_10262028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	637	Open in IMG/M
3300028802\|Ga0307503_10341751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	764	Open in IMG/M
3300030659\|Ga0316363_10024812	All Organisms → cellular organisms → Bacteria → Proteobacteria	3170	Open in IMG/M
3300030943\|Ga0311366_11433360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	593	Open in IMG/M
3300031521\|Ga0311364_11617367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	639	Open in IMG/M
3300031544\|Ga0318534_10101221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1649	Open in IMG/M
3300031834\|Ga0315290_11398912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	572	Open in IMG/M
3300031954\|Ga0306926_12765146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	531	Open in IMG/M
3300031997\|Ga0315278_10489269	All Organisms → cellular organisms → Bacteria → Proteobacteria	1266	Open in IMG/M
3300032052\|Ga0318506_10069693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1458	Open in IMG/M
3300032060\|Ga0318505_10076130	All Organisms → cellular organisms → Bacteria → Proteobacteria	1487	Open in IMG/M
3300032067\|Ga0318524_10104862	All Organisms → cellular organisms → Bacteria → Proteobacteria	1403	Open in IMG/M
3300032144\|Ga0315910_10406994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	1042	Open in IMG/M
3300032164\|Ga0315283_10737583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1059	Open in IMG/M
3300032770\|Ga0335085_10139074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3065	Open in IMG/M
3300033004\|Ga0335084_10028638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5690	Open in IMG/M
3300033418\|Ga0316625_100993682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	746	Open in IMG/M
3300033482\|Ga0316627_100346684	All Organisms → cellular organisms → Bacteria → Proteobacteria	1246	Open in IMG/M
3300033482\|Ga0316627_100925653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	838	Open in IMG/M
3300033557\|Ga0316617_101343849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	715	Open in IMG/M
3300034128\|Ga0370490_0017136	Not Available	2446	Open in IMG/M
3300034128\|Ga0370490_0029191	All Organisms → cellular organisms → Bacteria → Proteobacteria	1832	Open in IMG/M
3300034158\|Ga0370507_0024698	All Organisms → cellular organisms → Bacteria → Proteobacteria	1802	Open in IMG/M
3300034161\|Ga0370513_027405	All Organisms → cellular organisms → Bacteria → Proteobacteria	1587	Open in IMG/M
3300034169\|Ga0370480_0250243	All Organisms → cellular organisms → Bacteria → Proteobacteria	598	Open in IMG/M
3300034194\|Ga0370499_0013665	All Organisms → cellular organisms → Bacteria → Proteobacteria	1838	Open in IMG/M
3300034197\|Ga0370508_0333732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	506	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.91%
Engineered	Engineered	8.49%
Host-Associated	Host-Associated	6.60%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	44.34%
Terrestrial	Environmental → Terrestrial	40.57%
Wastewater	Engineered → Wastewater	8.49%
Plants	Host-Associated → Plants	3.77%
Arthropoda	Host-Associated → Arthropoda	2.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.79%
Freshwater	Environmental → Aquatic → Freshwater	33.96%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	6.60%
Marine	Environmental → Aquatic → Marine	5.66%
Sediment	Environmental → Aquatic → Sediment	2.83%
Digestive System	Host-Associated → Arthropoda → Digestive System	2.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.89%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.89%
Peat	Environmental → Terrestrial → Peat	1.89%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	1.89%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	18.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.15%
Lentic	Environmental → Aquatic → Freshwater → Lentic	9.43%
Sediment	Environmental → Aquatic → Freshwater → Sediment	8.49%
Lake	Environmental → Aquatic → Freshwater → Lake	7.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.60%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	6.60%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.83%
Sand	Environmental → Terrestrial → Soil → Sand	2.83%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	2.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.83%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.89%
Biological Phosphorus Removal	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal	1.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Ice	Environmental → Aquatic → Freshwater → Ice	0.94%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.94%
Sediment	Environmental → Aquatic → Marine → Sediment	0.94%
Loam	Environmental → Terrestrial → Soil → Loam	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	14.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.21%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	9.43%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	8.49%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	6.60%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.66%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.72%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.83%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.83%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.83%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.89%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.94%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%
Bioreactor	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor	0.94%
Activated Sludge	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Activated Sludge	0.94%

Habitat	Taxonomy	Distribution
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	9.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.55%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	6.60%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	6.60%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.66%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.77%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.83%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.83%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	2.83%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	2.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.83%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.83%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	2.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.89%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.89%
Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Microbial Mat	1.89%
Hot Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring	1.89%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.89%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.89%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.89%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.94%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.94%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.94%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.94%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.94%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Lab-Scale Ebpr Bioreactor	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Lab-Scale Ebpr Bioreactor	0.94%
Enhanced Biological Phosphorus Removal Bioreactor	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Activated Sludge → Enhanced Biological Phosphorus Removal Bioreactor	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002127	Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3	Host-Associated	Open in IMG/M
3300002175	Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5	Host-Associated	Open in IMG/M
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300004066	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D2	Environmental	Open in IMG/M
3300004180	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 10_HOW4	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005670	Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V90104 Phage Sequencing	Engineered	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006417	Combined Assembly of Gp0110018, Gp0110022, Gp0110020	Engineered	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental	Open in IMG/M
3300009527	Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold Creek	Environmental	Open in IMG/M
3300009654	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR3_MetaG	Engineered	Open in IMG/M
3300009655	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR4_MetaG	Engineered	Open in IMG/M
3300009664	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG2_MetaG	Engineered	Open in IMG/M
3300009796	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_0_10	Environmental	Open in IMG/M
3300009805	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_0_10	Environmental	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010313	Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG	Environmental	Open in IMG/M
3300010344	AD_JPASca	Engineered	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012094	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ858 (22.06)	Environmental	Open in IMG/M
3300012174	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT366_2	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300014319	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014874	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_2_16_10D	Environmental	Open in IMG/M
3300015084	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5a, rocky medial moraine)	Environmental	Open in IMG/M
3300015216	Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Kb	Environmental	Open in IMG/M
3300015240	Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Kc	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020214	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015054 Kigoma Offshore 80m	Environmental	Open in IMG/M
3300022209	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_13	Environmental	Open in IMG/M
3300024972	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 10_HOW4 (SPAdes)	Environmental	Open in IMG/M
3300025116	Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG (SPAdes)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025605	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR3_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025613	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR4_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025638	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR2_MetaG (SPAdes)	Engineered	Open in IMG/M
3300026072	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D1 (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026349	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU6	Environmental	Open in IMG/M
3300027721	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027763	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027904	Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)	Host-Associated	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300028420	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.641 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034128	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16	Environmental	Open in IMG/M
3300034158	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_18	Environmental	Open in IMG/M
3300034161	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_18	Environmental	Open in IMG/M
3300034169	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15	Environmental	Open in IMG/M
3300034194	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_17	Environmental	Open in IMG/M
3300034197	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02S_18	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1063480552	3300001213	Wetland	MMRFLLARAVNPQLSLLDGLRNWNHIASGLREGRRKRRYQHDDLDQLLS*
JGI20164J26629_100388232	3300002127	Termite Gut	MMRFLLARAVNPAISLLRGLREWNMFAASLREPPRKRRRYQADAWDRFLS*
JGI20166J26741_120448361	3300002175	Termite Gut	MMRFLLARAVNPVISLLRGLREWNMFAASLREPPRKRRRYQADAWGR
Ga0031656_100665921	3300003858	Freshwater Lake Sediment	MMRFLLARAVNPQLTLLDGLRNWNHVATGLREGRRKRSYQHDDLDQFLS*
Ga0031656_101168072	3300003858	Freshwater Lake Sediment	VALMRFLLARAVNPALPLLEGLRSWNQSAAALREAPRKRRYQHDDMDRFLY*
Ga0055484_100381832	3300004066	Natural And Restored Wetlands	MRFLVARAVNPQLGLFDGLRQWNGIAAALRESPRKRTYQTDDLDQFLS*
Ga0066408_10103312	3300004180	Freshwater Sediment	MMRFLLARAVNPQLSLLDGLRDWNAIAAGLREPPRRRRRYQGDNLERFLS*
Ga0062380_100422761	3300004779	Wetland Sediment	MMRFLVARAVNPQLSLHEGLRNWNGIAAALREPTRKRRRYQGDDLERFLS*
Ga0070698_1006849282	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MMRFLLARAVNPSMSLLEGLRAWNLIALALREPPRKRRYQHDNLDQFLS*
Ga0068853_1000495724	3300005539	Corn Rhizosphere	MRFLIARAINPHIDLLAGLRNWNQIANSLREPPRKRRGYQLDDLDQFLS*
Ga0074419_1058871	3300005670	Lab-Scale Ebpr Bioreactor	MRFLIARAVNPQLTLLDGLRDWNNIAAALREPPRKRRQYQGDNLGEFLS*
Ga0074479_108723362	3300005829	Sediment (Intertidal)	MRALLARAVNPDLSLPDALRDWNSIASSLRERPRKRRYQREQLDEFLS*
Ga0066652_1016819152	3300006046	Soil	MRFLVSRAVNPQLNLLDGLRGWNGIAASLREPPRKRRRYQGDDLEQFLS*
Ga0069787_106012591	3300006417	Enhanced Biological Phosphorus Removal Bioreactor	MMRFLIARAVNPQLTLLDGLRDWNNIAAALREPPRKRRQYQGDNLGEFLS*
Ga0079303_102231572	3300006930	Deep Subsurface	MRCLVARAVNPQMNLLDGLREWNGIATALREPPRRRRRYQGDDWDQFLS*
Ga0079303_104247661	3300006930	Deep Subsurface	MMRFLLARAVNPQLSLLDGLRNWNHIASGLRGGRRKRRYQHDDLDQFLS*
Ga0105090_101418782	3300009075	Freshwater Sediment	MMRFLVARAVNPQLSLLDGLRNWNGIAAALREPPRKRRRYQGDDLERFLA*
Ga0105103_102400352	3300009085	Freshwater Sediment	MMRFLVARAVNPQLSLLDGLRNWNGIAAALREPPRNRRRYQGDELERFLS*
Ga0102851_105439532	3300009091	Freshwater Wetlands	MMRFLLARAVNPQLSLLDGLRNWNHIASGLREGRRKRRYQHDDLDQFLS*
Ga0113563_118950872	3300009167	Freshwater Wetlands	MMRFLLARAVNPQISLLDGLRNWNHVASGLREGRRKRMYQHDDLDQFLS*
Ga0113563_138839072	3300009167	Freshwater Wetlands	MRFMLARAVNPPGSLLEGLRRWNPMALALREAPRKRRYQYDEMEQFLS*
Ga0105096_100099946	3300009170	Freshwater Sediment	MMRFLVARAVNPQLNLLDGLRDWNGIAAALREPPRNRRRYQGDDLERIVS*
Ga0114979_101459622	3300009180	Freshwater Lake	MMRFLVARAVNPQLSLRDGLRHWNGIATALREPPRRRRRYQEDDLEQFLS*
Ga0114942_10277131	3300009527	Groundwater	MMRFLVARAVNPPLSLLAGLRDWNGTAAALREPPRKRRRYQGDDLEQILS*
Ga0116167_10579022	3300009654	Anaerobic Digestor Sludge	MMRFLLARAVNPTTTLRGGLRDWNKLAAALREPPRKRRRYQADARDAFLS*
Ga0116190_11710232	3300009655	Anaerobic Digestor Sludge	MMRFLLARAVNPTTTLRGGLRDWNKLAAALREPPRKRRRYQADARDTFLS*
Ga0116146_12038782	3300009664	Anaerobic Digestor Sludge	MMRFLIARAVNPQLTLLDGLRDWNNIAAALREPPRKRRRYQGDNLEEFLS*
Ga0105086_1011031	3300009796	Groundwater Sand	MMRFLLARAVNPQLSLLDGLRNWNHVASGLREGRRKRTYQH
Ga0105079_10198142	3300009805	Groundwater Sand	MMRFLLARAVNPQLSLLDGLRNWNHVASGLREGRRKRRYQHDNLDQLLS*
Ga0105087_10197741	3300009819	Groundwater Sand	MMRFLLARAVNPQLSLLDGLRNWNHVASGLREGRRKRTYQHDNLDRFLS*
Ga0116223_100782711	3300009839	Peatlands Soil	MMRFLLARAVNPPISLTEGLRTWNRLARDLRERRRRRLYQLDRISEFLC*
Ga0116211_10381201	3300010313	Hot Spring	MMRFLLARAVNPSTTLLEGLRDWNKFAAALREPPRKRRRYQADSWDAFLS*
Ga0116243_101883952	3300010344	Anaerobic Digestor Sludge	MMRFLVAHAVNPQMSLLDGLRDWNSIAASLREPPRKRRRYQGDALEAFLS*
Ga0126379_123748382	3300010366	Tropical Forest Soil	MMRFMLARAVNPPVSLLEGLRMWNPIALALREPPRKRRRYQHDDLDQFLS*
Ga0136638_101007053	3300012094	Polar Desert Sand	MRCLVARAVNPQLNLLEGLRQWNAIAAALREPPRRRRQYQGDDWDHFLS*
Ga0137338_11194141	3300012174	Soil	MMRFLLARAVNPQLSLLDGLRNWNHVATGLREGRRKRRYQHDDLGQFLS
Ga0157216_102723641	3300012668	Glacier Forefield Soil	MMRFLLARAVNPQVSLLEGLRSWNQIATALREPPRKRRRYQHDDLDQFLY*
Ga0075348_11947101	3300014319	Natural And Restored Wetlands	MMRFLVARAVNPQLGLFDGLRQWNGIAAALRESPRKCTYQTDDLDQFLS*
Ga0163163_102129442	3300014325	Switchgrass Rhizosphere	MRFLIARAINPHIDLLAGLRNWNQIASSLREPPRKRRGYQLDDLDQFLS*
Ga0180084_10695172	3300014874	Soil	MMRFLLARAVNPSVSLLEGLRAWNPIALALREPPRKRRYQHDNLEQLLS*
Ga0167654_10186462	3300015084	Glacier Forefield Soil	MMRFLVARAVNPQLGLHEGLRQWNSIAASLRESARKRRYQADELETFLS*
Ga0182875_100572202	3300015216	Microbial Mat	MRCLVARAVNPQMNLLDGLREWNGIATALREPPRRRRRYQGDDWDRFLS*
Ga0182876_100547401	3300015240	Microbial Mat	KRRCHWREFSMMRFLISRAVNPPISLFDGLKTWNRIAHALREPPRKRTYQADRMDDFLC*
Ga0190270_125252622	3300018469	Soil	MMRFLVARAVNPQLNLLEGLREWNGIAAALREPPRRRRRYQSDDWWSFLS
Ga0190271_105193313	3300018481	Soil	ARAVNPPLSLLDGLRDWNGTAAALREPPRKRRRYQGDDLEQFLS
Ga0190271_112442902	3300018481	Soil	MMRFLVARAVNPPLSLLDGLRDWNGTAAALREPPRKRRRYQGDELEQFLS
Ga0190264_121148971	3300019377	Soil	MMRFLVARAVNPQLSLLDGLRDWNGIAAALREPPRKRRRYQGDDLDQFLS
Ga0190267_103100592	3300019767	Soil	MRFLLARAVNPHISLLEGLRKWNLMASALREAPRKRRRYQHDDLDCFLS
Ga0180118_13124654	3300020063	Groundwater Sediment	MMRFLLARAVNPSVSLLEGLRAWNPIALALREPPRKRRYQHDNLDQFLS
Ga0194132_103574202	3300020214	Freshwater Lake	MMRFLLSRAVNPAGSLLDALRDWNSIAASLREPSRKKRRYQCDGLKEIL
Ga0224497_100749211	3300022209	Sediment	MRFLLARAVNPVISLVEGLRTWNDIARTLRECRRRRQYQNDRISQFLS
Ga0208626_10152582	3300024972	Freshwater Sediment	MMRFLLARAVNPQLSLLDGLRDWNAIAAGLREPPRRRRRYQGDNLERFLS
Ga0209207_10308312	3300025116	Hot Spring	MMRFLLARAVNPSTTLLEGLRDWNKFAAALREPPRKRRRYQADSWDAFLS
Ga0207656_105739001	3300025321	Corn Rhizosphere	MRFLIARAINPHIDLLAGLRNWNQIANSLREPPRKRRGYQLDDLDQFLS
Ga0209720_11410302	3300025605	Anaerobic Digestor Sludge	MMRFLLARAVNPTTTLRGGLRDWNKLAAALREPPRKRRRYQA
Ga0208461_11715181	3300025613	Anaerobic Digestor Sludge	MMRFLLARAVNPTTTLRGGLRDWNKLAAALREPPR
Ga0208198_11691862	3300025638	Anaerobic Digestor Sludge	MMRFLLARAVNPTTTLRGGLRDWNKLAAALREPPRKRRRYQAD
Ga0208292_10121661	3300026072	Natural And Restored Wetlands	MMRFLVARAVNPQLGLFDGLRQWNGIAAALRESPRKRTYQTDDLDQFLS
Ga0207675_1015113251	3300026118	Switchgrass Rhizosphere	MRFLIARAINPHIDLLVGLRNWNQIASSLREPPRKRRGYQLDDLDQFLS
Ga0256811_10030032	3300026349	Sediment	MRFLLARAVNPQASLLEGLRNWNALAAALREPPRRRRYQADTWDEFLS
Ga0209492_12404661	3300027721	Freshwater Sediment	MMRFLVARAVNPQLSLLDGLRNWNGIAAALREPPRKRRRYQGDDLERFLA
Ga0209088_101444442	3300027763	Freshwater Lake	MMRFLVARAVNPQLSLRDGLRHWNGIATALREPPRRRRRYQEDDLEQFLS
Ga0209797_100668342	3300027831	Wetland Sediment	MMRFLVARAVNPQLSLHEGLRNWNGIAAALREPTRKRRRYQGDDLERFLS
Ga0209797_102206251	3300027831	Wetland Sediment	MRFLLARAVNPALSLVGGLRAWNDIARSLRERQRRRQY
Ga0209397_100381651	3300027871	Wetland	MMRFLLARAVNPQLSLLDGLRNWNHIASGLREGRRKRRYQHDDLDQFLS
Ga0209450_100498353	3300027885	Freshwater Lake Sediment	MMRFLLARAVNPQLTLLDGLRNWNHVATGLREGRRKRSYQHDDLDQFLS
Ga0208980_101638262	3300027887	Wetland	MMRFLLARAVNPQLSLLDGLRNWNHIASGLREGRRKRRYQHDDLDQLLS
Ga0208980_103512732	3300027887	Wetland	MMRFLVARAVNPQLSLLDGLRDWNGIAAALREPPRKRRRYQGDDLERFLS
Ga0209254_101184884	3300027897	Freshwater Lake Sediment	MRFLLARAVNPEASLLEGLRNWNALAAALREPPRRRRYQADTWDEFLS
Ga0209254_101405183	3300027897	Freshwater Lake Sediment	VALMRFLLARAVNPALPLLEGLRSWNQSAAALREAPRKRRYQHDDMDRFLY
Ga0209254_102350752	3300027897	Freshwater Lake Sediment	MMRYLVARAVNPQLSLLDGLRDWNGIAAKLREPPRKRRRYQGDDLEQFLS
Ga0209253_100968502	3300027900	Freshwater Lake Sediment	MRFLLARAVNPPLTLVEGLRHWNQMATGLRERPRKRRYQQDDLEQFLS
Ga0209253_103279992	3300027900	Freshwater Lake Sediment	MMRFLVARAVNPPISLIDGLRSWRQIANSLREPPRKRRYQQDKLNRFLC
Ga0209253_111570672	3300027900	Freshwater Lake Sediment	MMRFLLARAVNPSVSLLEGLRAWNPIALALREPPRKRRYQ
Ga0209048_110458721	3300027902	Freshwater Lake Sediment	MRFLLAHAVNPDLSLLEGLRSWNQSAAALREAPRKRRYQHN
Ga0209737_100090642	3300027904	Termite Gut	MMRFLLARAVNPAISLLRGLREWNMFAASLREPPRKRRRYQADAWDRFLS
Ga0209415_102469482	3300027905	Peatlands Soil	MMRFLLARAVNPPISLTEGLRTWNRLARDLRERRRRRLYQLDRISEFLC
Ga0209391_103635112	3300027975	Freshwater Sediment	MMRFLVARAVNPQLNLLDGLRDWSGIAAALREPPRNRRRYQGDELERFLS
Ga0210366_100258532	3300028420	Estuarine	MRFLLARAVNPVISLVDGLRTWNDIARTLRECRRRRQYQNDRISQFLS
Ga0307504_102620282	3300028792	Soil	MRFLLARAVNPHVSLLESLRKWNLMAYALREAPRKRRRYQQDDLDRCLS
Ga0307503_103417511	3300028802	Soil	MMRFFVARAVNPHLSLLEGLRDWNGIAAALREPPRKRRRYQGDDLEQFLS
Ga0316363_100248123	3300030659	Peatlands Soil	MMRFLLARAVNPPISLTEGLRTWNRLARDLRERRRRRLYQL
Ga0311366_114333601	3300030943	Fen	MMRFLVARAVNPQLSLLDGLRDWNRIAAALRESPRKRRRYQGDDLDQFLS
Ga0311364_116173672	3300031521	Fen	MMRFLVARAVNPQLSLLDGLRDWNSIAAALRESPRRRRRYQGDDLEQFLS
Ga0318534_101012213	3300031544	Soil	MMRFLLARAVNPSLSLLEGLRAWNPIAHALREPPRKRRYQHDNLEQFLS
Ga0315290_113989122	3300031834	Sediment	VALMRFLLAHAVNPDLSLLEGLRSWNQSAAALREAPRKRRYQHDEMDRFLY
Ga0306926_127651462	3300031954	Soil	MMRFMLARAVNPPVSLLEGLRMWNTMALALREPPRKRRRYQHDELDQFLS
Ga0315278_104892691	3300031997	Sediment	MRFLLAHAVNPDLSLLEGLRSWNQSAAALREAPRKRRYQHDEMDRFLY
Ga0318506_100696933	3300032052	Soil	MMRFLLARAVNPSLSLLEGLRAWNPIAHALREPPRKRRYQ
Ga0318505_100761302	3300032060	Soil	MMRFLLARAVNPSLSLLEGLRAWNPIAHALREPPRKRRYQHDDLEQFLS
Ga0318524_101048621	3300032067	Soil	MMRFLLARAVNPSLSLLEGLRAWNPIAHALREPPRK
Ga0315910_104069942	3300032144	Soil	MRFLVARAVNPQKRLIDALRNWNEIAAALREAPRKRQYQHERLEYFLS
Ga0315283_107375831	3300032164	Sediment	AHAVNPDLSLLEGLRSWNQSAAALREAPRKRRYPHDEMDRFLY
Ga0335085_101390743	3300032770	Soil	MMRFLLARAVNPSLSLLQGLRAWNPIAHALREPPRKRQYQHDNLEQFLS
Ga0335084_100286383	3300033004	Soil	MRFLLARAVNPQLSLLEGLHRWNQIATALREAPRKRRRYQLDDLDRFLS
Ga0316625_1009936821	3300033418	Soil	MMRFLLARAVNPQISLLDGLRNWNHVASGLREGRRKRMYQHDELDQLLS
Ga0316627_1003466842	3300033482	Soil	MRFMLARAVNPPGSLLEGLRRWNPMALALREAPRKRRYQHDEMEQ
Ga0316627_1009256531	3300033482	Soil	MRCLVARAVNPQMNLLDGLREWNGIATALREPPRRRRRYQGDDWDHFL
Ga0316617_1013438492	3300033557	Soil	MMRFLLARAVNPQISLLDGLRNWNHVASGLREGRRKRMYQHDDLDQFLS
Ga0370490_0017136_1527_1715	3300034128	Untreated Peat Soil	MMRFLVTRAVNPQLSLLDGLRNLNGIAAALREPPRKRRRYQGDDLERFLSQRLCPPRHAASR
Ga0370490_0029191_66_215	3300034128	Untreated Peat Soil	MRCLVARAVNPQMNLLDGLREWNGIATALREPPRRRRRYQGDDWDQFLS
Ga0370507_0024698_2_136	3300034158	Untreated Peat Soil	MRCLVARAVNPQMNLLDGLREWNGIATALREPPRRRRRYQGDDWD
Ga0370513_027405_1356_1505	3300034161	Untreated Peat Soil	MRFLVARAVNPQVSLLQGLRDWNGIADALREPPRKRRRYQGDDLDQFLS
Ga0370480_0250243_407_595	3300034169	Untreated Peat Soil	MMRFLVTRAVNPQLSLLDGLRNWNGIAAALREPPRKRRRYQGDDLERFLSQRLCPPRHAASR
Ga0370499_0013665_179_370	3300034194	Untreated Peat Soil	MMRFLVTRAVNPQLSLLDGLRNLNGIAAALREPPRKRRRYQGDDLERFLSQRLCPPPRHAASR
Ga0370508_0333732_2_127	3300034197	Untreated Peat Soil	MMRFLISRAVNPPISLFDGLKTWNRIAHALREPPRKRTYQAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093898

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences