Metagenome Family F093808

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093808
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	70 residues
Representative Sequence	MGDEINWHASTGNRRLMENPLYVKYSNSTFSNIAAVDVKADLNGVLATAESAEICAYLSWLLRTLALLA
Number of Associated Samples	48
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	71.70 %
% of genes near scaffold ends (potentially truncated)	20.75 %
% of genes from short scaffolds (< 2000 bps)	78.30 %
Associated GOLD sequencing projects	43
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Archaea (39.623 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (30.189 % of family members)
Environment Ontology (ENVO)	Unclassified (65.094 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (100.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94. 1GOS2249_10265054 2Ga0055584_1015018111 3Ga0055584_1019191902 4Ga0068515_1011344 5Ga0068515_1023304 6Ga0068515_1030312 7Ga0068515_1035222 8Ga0068515_1035804 9Ga0068515_1043212 10Ga0068515_1087001 11Ga0068515_1095672 12Ga0068515_1100234 13Ga0068515_1111952 14Ga0068515_1208051 15Ga0068515_1208362 16Ga0068515_1208392 17Ga0068515_1208602 18Ga0068515_1271072 19Ga0068513_10017832 20Ga0068513_10019792 21Ga0068513_10022964 22Ga0068513_10024612 23Ga0068513_10024892 24Ga0068513_10048652 25Ga0068513_10051971 26Ga0068513_10052842 27Ga0068513_10061553 28Ga0068513_10082022 29Ga0068513_10090532 30Ga0068513_10091412 31Ga0068513_10136962 32Ga0068513_10139902 33Ga0068513_10146281 34Ga0068513_10173612 35Ga0068513_10174032 36Ga0068513_10174172 37Ga0068513_10183141 38Ga0068513_10207662 39Ga0068513_10226862 40Ga0068513_10244521 41Ga0068513_10260732 42Ga0068513_10277702 43Ga0068513_10282012 44Ga0068513_10300802 45Ga0068513_10329592 46Ga0068513_10356532 47Ga0101441_1269447 48Ga0070746_104465441 49Ga0115571_10327504 50Ga0115571_10352662 51Ga0115571_10648842 52Ga0115571_10992292 53Ga0115571_13933952 54Ga0115572_103672673 55Ga0116813_10534791 56Ga0181403_10092724 57Ga0181403_10232472 58Ga0181404_10411742 59Ga0181390_11770132 60Ga0181433_10040586 61Ga0181433_10245005 62Ga0181393_10081374 63Ga0181414_10160054 64Ga0181385_11134712 65Ga0181413_10156772 66Ga0181394_12681042 67Ga0181565_100878463 68Ga0181565_101919893 69Ga0181565_103257022 70Ga0181584_103299012 71Ga0181584_109108131 72Ga0181607_106419362 73Ga0181577_101805843 74Ga0181583_100474584 75Ga0181583_100829272 76Ga0181580_100885424 77Ga0181571_102899363 78Ga0181571_109367992 79Ga0181582_100577731 80Ga0181581_102380372 81Ga0181590_104961492 82Ga0181576_102545521 83Ga0181569_106591302 84Ga0181572_107588781 85Ga0181558_104341201 86Ga0181567_106456261 87Ga0181591_106090802 88Ga0181594_101195841 89Ga0181594_104869911 90Ga0181574_102712272 91Ga0181574_102853692 92Ga0181573_101975972 93Ga0211622_102532292 94Ga0206123_100882603 95Ga0222719_101803492 96Ga0224906_10066511 97Ga0224906_100665110 98Ga0255767_12980001 99Ga0255784_105484782 100Ga0255743_104460772 101Ga0255760_103077383 102Ga0255762_103519461 103Ga0255776_102597413 104Ga0209716_10273013 105Ga0209716_10432352 106Ga0209716_10747842
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94. 1GOS2249_10265054 2Ga0055584_1015018111 3Ga0068515_1011344 4Ga0068515_1023304 5Ga0068515_1043212 6Ga0068513_10090532 7Ga0068513_10174032 8Ga0068513_10207662 9Ga0068513_10300802 10Ga0070746_104465441 11Ga0115571_10352662 12Ga0115571_13933952 13Ga0181403_10232472 14Ga0181433_10040586 15Ga0181565_103257022 16Ga0181584_109108131 17Ga0181571_109367992 18Ga0181572_107588781 19Ga0224906_10066511 20Ga0255743_104460772
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. 1Ga0181571_102899363 2GOS2249_10265054 3Ga0068515_1011344 4Ga0068515_1030312 5Ga0068515_1035222 6Ga0068515_1035804 7Ga0068515_1043212 8Ga0068515_1095672 9Ga0068515_1208051 10Ga0068515_1208362 11Ga0068515_1208392 12Ga0068515_1208602 13Ga0068515_1271072 14Ga0068513_10017832 15Ga0068513_10022964 16Ga0068513_10024892 17Ga0068513_10048652 18Ga0068513_10051971 19Ga0068513_10052842 20Ga0068513_10061553 21Ga0068513_10090532 22Ga0068513_10091412 23Ga0068513_10136962 24Ga0068513_10139902 25Ga0068513_10146281 26Ga0068513_10174032 27Ga0068513_10183141 28Ga0068513_10207662 29Ga0068513_10260732 30Ga0068513_10277702 31Ga0068513_10300802 32Ga0068513_10356532 33Ga0070746_104465441 34Ga0115571_10327504 35Ga0115571_10352662 36Ga0115571_10648842 37Ga0115571_10992292 38Ga0115571_13933952 39Ga0116813_10534791 40Ga0181403_10092724 41Ga0181404_10411742 42Ga0181433_10040586 43Ga0181393_10081374 44Ga0181413_10156772 45Ga0181565_101919893 46Ga0181565_103257022 47Ga0181584_103299012 48Ga0181584_109108131 49Ga0181607_106419362 50Ga0224906_100665110
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.36% β-sheet: 0.00% Coil/Unstructured: 54.64%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.118.8.1: Tetratricopeptide repeat (TPR)	d1ya0a1	1ya0	0.68425
a.118.8.6: SusD-like	d3ckca_	3ckc	0.67841
a.211.1.2: PDEase	d3dy8a2	3dy8	0.67413
a.27.1.0: automated matches	d2ct8a2	2ct8	0.67001
a.211.1.2: PDEase	d1y2ka_	1y2k	0.66408

Showing 1 to 5 of 5 entries

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00239	Resolvase	7.62

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	7.62
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	7.62

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.04 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	40.57 %
Unclassified	root	N/A	33.96 %
Viruses	superkingdom	All Organisms → Viruses	25.47 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	39.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.47 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Thermoplasmatota	phylum	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota	20.75 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	18.87 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.47 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Poseidoniia	class	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia	20.75 %
Nitrospinae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.47 %
Unclassified	root	N/A	33.96 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	17.92 %

Name	Rank	Taxonomy	Distribution
Candidatus Poseidoniales	order	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales	20.75 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	17.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.47 %
Unclassified	root	N/A	33.96 %
unclassified Nitrospinota	no rank	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota	0.94 %

Name	Rank	Taxonomy	Distribution
Candidatus Poseidoniaceae	family	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae	20.75 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	17.92 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.47 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Poseidonia	genus	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae → Candidatus Poseidonia	20.75 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	17.92 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.47 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	17.92 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.47 %
Unclassified	root	N/A	33.96 %
unclassified Candidatus Poseidonia	no rank	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae → Candidatus Poseidonia → unclassified Candidatus Poseidonia	20.75 %

Name	Rank	Taxonomy	Distribution
Candidatus Poseidonia sp.	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae → Candidatus Poseidonia → unclassified Candidatus Poseidonia → Candidatus Poseidonia sp.	20.75 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	17.92 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	25.47 %
Unclassified	root	N/A	33.96 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001951\|GOS2249_1026505	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1669	Open in IMG/M
3300004097\|Ga0055584_101501811	Not Available	699	Open in IMG/M
3300004097\|Ga0055584_101919190	Not Available	608	Open in IMG/M
3300004829\|Ga0068515_101134	All Organisms → Viruses → Predicted Viral	3438	Open in IMG/M
3300004829\|Ga0068515_102330	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae → Candidatus Poseidonia → unclassified Candidatus Poseidonia → Candidatus Poseidonia sp.	2425	Open in IMG/M
3300004829\|Ga0068515_103031	All Organisms → Viruses → Predicted Viral	2166	Open in IMG/M
3300004829\|Ga0068515_103522	All Organisms → Viruses → Predicted Viral	2013	Open in IMG/M
3300004829\|Ga0068515_103580	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae → Candidatus Poseidonia → unclassified Candidatus Poseidonia → Candidatus Poseidonia sp.	1998	Open in IMG/M
3300004829\|Ga0068515_104321	All Organisms → Viruses → Predicted Viral	1829	Open in IMG/M
3300004829\|Ga0068515_108700	All Organisms → Viruses → Predicted Viral	1282	Open in IMG/M

Showing 1 to 10 of 106 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	1.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	31.13%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	16.04%
Oceanic	Environmental → Aquatic → Marine → Oceanic	27.36%
Pelagic	Environmental → Aquatic → Marine → Pelagic	9.43%
Strait	Environmental → Aquatic → Marine → Strait	12.26%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.89%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	30.19%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	27.36%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	16.04%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	12.26%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	9.43%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.94%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.94%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.94%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.94%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.94%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.94%
Marine Water	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water	26.42%
Marine Water	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water	14.15%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	8.49%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.89%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	30.19%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	12.26%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.94%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001951	Marine microbial communities from North Seamore Island, Equador - GS034	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300004829	Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs	Environmental	Open in IMG/M
3300004951	Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs	Environmental	Open in IMG/M
3300006621	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ07 time point	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300013253	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station4_GOM_Metagenome	Environmental	Open in IMG/M
3300017710	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28	Environmental	Open in IMG/M

Showing 1 to 10 of 48 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GOS2249_10265054	3300001951	Marine	VVQVQGYPINFGASPGNRRLMEHPLYIKYSNSTYGAINAVDVKADLNGVLATAETAEVVFFLSSLLRVKALLA*
Ga0055584_1015018111	3300004097	Pelagic Marine	DINWNASTGNRRLMENPLYVKYSNSTFGNIVAADVKTDLSNVLATAETAEICAYLSWLLRTLALIA*
Ga0055584_1019191902	3300004097	Pelagic Marine	MGYEINWHTSTGNIRLMQNPLYVKYSNTTFGNIQVADVKTDLNGVLATAESAEICAYLSWLIRTLDLVA*
Ga0068515_1011344	3300004829	Marine Water	VVNGYPINWATGMNNTRLLQNALYVKYASSRFADFTANDVKTDLNNVIATAESAEICAYLSWLLRTKALLA*
Ga0068515_1023304	3300004829	Marine Water	VQGYPINWATSLGNRRLLDNPLYVKYSNSTFSAISAANVKADLNGVLATAESAEICAYLSWLLRTLDLLA*
Ga0068515_1030312	3300004829	Marine Water	MSAGYPINWAASLGNRRLLEHPLYIKYSSSTFANITAVDVKADLNAVIATAESAEICAYLSWLLRTLALLA*
Ga0068515_1035222	3300004829	Marine Water	VVNGYPINWATDMGNTRLTQNPLYIKYASSRFADFTANDVKTDLGNVIATAQSAEICAYLSWLLRTKALLA*
Ga0068515_1035804	3300004829	Marine Water	MGAGYPINWAVAPGNRHLLSNPLYVKYSNSTFANITAAQVKADLNGVLATAESAEICAYLSWLLRTLDLLA*
Ga0068515_1043212	3300004829	Marine Water	VQGYPINWAASAANTRLMQNPLYVKYASSTFGTMDANEVKTDLSGIIATTESAEICAYLSWLLRTLALVA*
Ga0068515_1087001	3300004829	Marine Water	VQGYPINWAASTANTRLMQNPLYVKYSSSTFANINAVDVKADLNGVIATAESAEICAYLSWLLRTLAL
Ga0068515_1095672	3300004829	Marine Water	VQGYPINFGASPGNRRLMEHPLYIKYSNSTFGAITVNDVKTDLAGVLATAETAEIVFYLSSLLRVKALLA*
Ga0068515_1100234	3300004829	Marine Water	MGYEINWNASTGNRRLMENPLYVKYSNSTFGNIVAADVKTDLSNVLATAETAEICAYLSWLLRTLALVA*
Ga0068515_1111952	3300004829	Marine Water	VAEVQGYPINWAASTANTRLMQNPLYVKYASSTFGDIQAADVKTDLNGVIATAESAEICAYLSWLLRTLALVA*
Ga0068515_1208051	3300004829	Marine Water	MGAGYPINWAVAPGNRMLLQNPLYVKYSNSTFADISAAAVKADLNGVLATQESAEICAYLSWLLRTLALLA*
Ga0068515_1208362	3300004829	Marine Water	VGYEINWHSSTGNRRLMQNPLYIKYSNSTFADILAADVKTDLNAVLATAESAEICAYLSWLLRTLDLLA*
Ga0068515_1208392	3300004829	Marine Water	MGYEINWNASTGNRRLMENPLYVKYSNSTFANITAAQVKTDLNAVLATAESAEICAYLSWLLRTLDLLA*
Ga0068515_1208602	3300004829	Marine Water	VQGYPINFGASTGNRRLMEHPLYIKYSNSTYGAITANEVKADLSGVLCTAETSEIVFFLSSILRVKALLA*
Ga0068515_1271072	3300004829	Marine Water	MQGYPINFGASTGNRRLMEHPLYIKYSNSTYGAILAVDVKADLNGVLATAETAEIVFYLSSLLRTLDLLA*
Ga0068513_10017832	3300004951	Marine Water	VQGYPINWSASTANTRLMQNPLYVKYSNSTFGNIQAVDVKADLNGVLATAESAEICAYLSWLIRTLTLVA*
Ga0068513_10019792	3300004951	Marine Water	MQGYPINFGASPGNRVLMENPLYIKYSNSTYGAINAADVKTDLQGVLATAETAEIVFYLSSLLRVKALLA*
Ga0068513_10022964	3300004951	Marine Water	VQGYPINFGAAPGNRRLFEHPLYVKYSNSTYGAILAADVKTDLQGVLATAETAEIVFYLSSLLRVKALLA*
Ga0068513_10024612	3300004951	Marine Water	MGYEINWHTSTGNIRLMQNPLYVKYSNTTFANILVGDVKTDLNGVLATAESAEICAYLSWLIRTLDLLA*
Ga0068513_10024892	3300004951	Marine Water	LANGYEINWYASTGNRRLMSNPLYVKYSNSTFGNIQAADVKTDLNNVLATAESAEICAYLSWLLRTLGLVA*
Ga0068513_10048652	3300004951	Marine Water	MNGYPINFGVNPGNRRFMEHPLYIKYSNSTYAAINAVDVKADLNGVLATAETAEIVFYLSSLLRTKALLA*
Ga0068513_10051971	3300004951	Marine Water	MVNGYPINWATGMGNTALLRNPLYIKYSSSRFADFTANEVKTDLNNVIATAQSAEICAYLSWLLRTKALLA*
Ga0068513_10052842	3300004951	Marine Water	MTGAGYPINWASSTGNRRLMENPLYVKYASSSFANITAVDVKADLNGVMATAESAEICAYLSWLLRTLALLA*
Ga0068513_10061553	3300004951	Marine Water	MGAGYPINWAVGAGNRRLLTNPLYVKYSNSTFEDIQAADVKTDLNGVLATAESAEICAYLSWLLRTLALVA*
Ga0068513_10082022	3300004951	Marine Water	VVNGYPINWATGMNNTRLLQNPLYVKYASSRFADFTANDVKADLNNVIATAESAEICAYLSWLLRTKALLA*
Ga0068513_10090532	3300004951	Marine Water	MGAGYPINWAASTGNRRLMEHPLYIKYNSTTFADMNPVDVKTDLSNVLATADNAEICAYLSWLIRTLSLVV*
Ga0068513_10091412	3300004951	Marine Water	VKGYPINWAASTANTRLMTNPLYVKYSSSTFGDIDAATVKADLNGVIATAESAEICAYLSWLLRTLALVA*
Ga0068513_10136962	3300004951	Marine Water	MAGAGYPINWAASTGNRVLMQNPLYVKYSNSTFANIVAADVKADLNGVLATAESAEICAYLSWLLRTLALLA*
Ga0068513_10139902	3300004951	Marine Water	MTEGYPINWAASTGNRRLMENPLYVKYSNSTFATINPVDVKTDLLGVIATAESAEICAYLSWLIRTLALTV*
Ga0068513_10146281	3300004951	Marine Water	MQGYPINFGAAPGNRRLMENPLYVKYSNSTYGTINAADVKTDLSNTLATAETAEIVFYLSSLLRTLALIA*
Ga0068513_10173612	3300004951	Marine Water	LANGYEINWYASTGNRRLMENPLYVKYSNSTFGNIVAADVKTDLSNVLATAETAEICAYLSWLLRTLALVA*
Ga0068513_10174032	3300004951	Marine Water	VAYEINWHASTGNRRLMENPLYIKYASSTFADITAADVKADLNGVIATAESAEICWYLSWLLRTLELVA*
Ga0068513_10174172	3300004951	Marine Water	VQGYPINWAASTANQRLMQNPLYVKYSNSTFQNIQAVDVKADLNAVLATAESAEICAYLSWLLRTLALVA*
Ga0068513_10183141	3300004951	Marine Water	MGYEINWSASTGNRRLMENPLYVKYSNSTFGNIVAADVKTDLSNVLATAETAEICAYLSWLLRTLALIA*
Ga0068513_10207662	3300004951	Marine Water	MVNGYPINWALPSASLTTNPLYIKYASSTFGAILAADVKTDLQGVIATAESAEICAYLSWLLRTLALVA*
Ga0068513_10226862	3300004951	Marine Water	MQGYPINFGASTGNRRLMEHPLYIKYSNSTYGTITAANVKADLNGVLATAETAEIVFYLSSLLRTLDLLA*
Ga0068513_10244521	3300004951	Marine Water	VVNGYPINWATGMNNTRLLQNALYVKYASSRFADFTANDVKADLNNVIATAESAEICAYLSWLLRTKALLA*
Ga0068513_10260732	3300004951	Marine Water	MGYEINWHTSTGNTRLMQNPLYIKYSNSTFANILAADVKTDLSGVLATAESAEVCAYLSWLIRTLELVA*
Ga0068513_10277702	3300004951	Marine Water	VQGYPINWATSLGNRRLLDNPLYVKYSNSTFSAITAAQVKADLNGVLATAESAEICAYLSWLLRTLDLLA*
Ga0068513_10282012	3300004951	Marine Water	MGAGYPINWAASTGNRGLMTNPLYVKYSNSTFANIDPNAVKADLNGVLATAESAEICAYLSWLIRTLALVA*
Ga0068513_10300802	3300004951	Marine Water	MGAGYPINWAASTGNRGLMTNPLYVKYSNSTFANIDPNNVKADLSQVLATAESAEICAYLSWLIRTLALVA*
Ga0068513_10329592	3300004951	Marine Water	VQGYPINWATNLGNRRLLENPLYVKYSNSTFSAISAANVKADLNGVLATAESAEICAYL
Ga0068513_10356532	3300004951	Marine Water	MVAGYPINWAASPGNRRLMENPLYVKYSNSTFANIDAATVKADLNAVLATAETAEICAYLSWLLRTLALLA*
Ga0101441_1269447	3300006621	Marine Surface Water	MNGYPINFGINPGNRRFMEHPLYIKYSNSNFGAITANDVKTDLAGVLATAETAEIVFYLSSLLRVKALLA*
Ga0070746_104465441	3300006919	Aqueous	MNGYPINWAVAPGNRRLLTHPLYVTYSNSTFATINPVDGKTDLLGVMATQESAEICAYLSWLIRTLALTA*
Ga0115571_10327504	3300009495	Pelagic Marine	VDEVQGYPINWAASTANTRLMQNPLYVKYASSTFGTIQAVDVKADLNGVIATAESAEICAYLSWLLRTLALVA*
Ga0115571_10352662	3300009495	Pelagic Marine	MGAGYPINFALSPGGETRLKQNALYVKYASSTFGNIDLATLKADLAGVMATAQSAEICAYLSWLVRTKVLSAP*
Ga0115571_10648842	3300009495	Pelagic Marine	MGAGYPINFALSPGGETRLKQNGLYVKYASTTFGAIDLDDVKADLAGVMATAQSAEICAYLSWVIRTKVLSTP*
Ga0115571_10992292	3300009495	Pelagic Marine	MGYEINWHTSTGNIRLMHNPLYVKYSNTTFGNIQVADVKTDLNGVLATAESAEICAYLSWLIRTLDLVA*
Ga0115571_13933952	3300009495	Pelagic Marine	VGYEINWHSSQGNQRLMLHPLYIKYSSSTLGTIAVADVRNDLSGVIATAESSEICWYLSWLIRTRILLGDA*
Ga0115572_103672673	3300009507	Pelagic Marine	PINFALSPGGETRLKQNGLYVKYASTTFGAIDLDDVKADLAGVMATAQSAEICAFLSWGVRTKVLSTP*
Ga0116813_10534791	3300013253	Marine	VKGYPINWAASTANTRLMQNPLYVKYSNSTFATITEAQVKADLNGVLATAESAEICAYLSWLLRTLALLA*
Ga0181403_10092724	3300017710	Seawater	VVGYPINFGASPGNRRLMENPLYVKYSNSTYGAINAIDVKADLNAVLATAETAEIVFYLSSLLRVKALLV
Ga0181403_10232472	3300017710	Seawater	MGNTRLLQNPLYIKYSSSRFADFTANDVKTDLNNVIATAQSAEVCAYLSWLLRTKALLA
Ga0181404_10411742	3300017717	Seawater	MNGYPINFGINPGNRRFMEHPLYVKYSNSDYGAINATDVKADLAGVLATAETAEIVFYLSSLLRVKALLA
Ga0181390_11770132	3300017719	Seawater	MNGYPINFGVNPGNRRFMEHPLYIKYSNSTYAAINAVDVKADLNGVLATAETAEIVFYLSSLLRVKALLA
Ga0181433_10040586	3300017739	Seawater	MQGYPINFGAAPGNRRLMENPLYIKYSNSTYQNIDAAEVKTDLKATLATAETAEIVFYLSSLLRTLALIA
Ga0181433_10245005	3300017739	Seawater	VQGYPINFGASPGNRRLMENPLYVKYSNSTYQNINAADVKTDLKATLATAETAEIVFYLSSLLRTLALIA
Ga0181393_10081374	3300017748	Seawater	MQGYPINFGASPGNRRLMEHPLYVKYSNSNYGAINATDVKADLAGVLCTAETSEIVFFLSSILRVKALLA
Ga0181414_10160054	3300017759	Seawater	MQGYPINFGAAPGNRRLMENPLYIKYSNSTYQNINAADVKTDLKATLATAETAEIVFYLSSLLRTLALIA
Ga0181385_11134712	3300017764	Seawater	VVGYPINFGASPGNRRLMENPLYVKYSNSTYGAINAIDVKADLNAVLATAETAEIVFYLSSLLRVKALLA
Ga0181413_10156772	3300017765	Seawater	MTGPGFPINWAASTGNRSLMSNPLYVKYSNSTFANITAEQVKADLAGVLATAETAEICAYLSWLLRTLALLA
Ga0181394_12681042	3300017776	Seawater	VTNGYPINWATGMGNTRLLQNPLYIKYSSSRFADFTANDVKTDLNNVIATAQSAEVCAYLSWLLRTKALLA
Ga0181565_100878463	3300017818	Salt Marsh	VDEVQGYPINWAASTANTRLMQNPLYIKYASSTFGTIQAVDVKADLNGVIATAESAEICAYLSWLLRTLALVA
Ga0181565_101919893	3300017818	Salt Marsh	MVNGYPINWAITSDRLRLNPLYVKYSNSPFNGISAAAVKADLNEVLATAESAEICAYLSWLLRTLQLLA
Ga0181565_103257022	3300017818	Salt Marsh	MTGYEINFNASTGNRRLMENPLYVKYSSSEFSAIDASAVKADFNKVIATVESAEICAYLSWLLRTLALLA
Ga0181584_103299012	3300017949	Salt Marsh	MGYEINWHASTGNRRLMENPLYVKYSSATFADIQVVDVKADLNGVIATAESAEICAYLSWLLRTLDLLA
Ga0181584_109108131	3300017949	Salt Marsh	PPLLEVFSLSGYEINWSASTGNRRLMENPLYVKYSSSAFADITAVDVKADLNNVIATAESAEICAYLSWLLRTLALLA
Ga0181607_106419362	3300017950	Salt Marsh	MTTGFEINWHASTGNRRLMENPLYVKYSNSTFANITEAQVKADLNGVLATAESAEICAYLSWLLRTLALLA
Ga0181577_101805843	3300017951	Salt Marsh	MTGYEINFNASTGNRRLMENPLYVKYSSSEFSAIDASAVKADLNKVIATVESGEICAYLSWLLRTLALLA
Ga0181583_100474584	3300017952	Salt Marsh	MTGYEINFNASTGNRRLMENPLYVKYSSSEFSAIDASAVKADLNKVIATVESAEICAYLSWLLRTLALLA
Ga0181583_100829272	3300017952	Salt Marsh	VQGYPINWAASTANTRLMQNPLYIKYASSTFGTIQAVDVKADLNGVIATAESAEICAYLSWLLRTLALVA
Ga0181580_100885424	3300017956	Salt Marsh	MTGYEINFNASTGNRRLMENPLYVKYSSSEFSAIDAAAVKADFNKVIATVESAEICAYLSWLLRTLALLA
Ga0181571_102899363	3300017957	Salt Marsh	MGDEINWHASTGNRRLMENPLYVKYSNSTFSNIAAVDVKADLNGVLATAESAEICAYLSWLLRTLALLA
Ga0181571_109367992	3300017957	Salt Marsh	MTTGFEINWHASTGNRRLMENPLYVKYSNSTFANITEAQVKADLNRVLATAESAEICAYLSWLLRT
Ga0181582_100577731	3300017958	Salt Marsh	MTGYEINSNASTGNRRLMENPLYVKYSSSEFSAIDASAVKADFNKVIATVESAEICAYLS
Ga0181581_102380372	3300017962	Salt Marsh	MTGYEINFNASTGNRRLMEHPLYVKYSSSEFSAIDAAAVKADFNKVIATVESAEICAYLSWLLRTLALLA
Ga0181590_104961492	3300017967	Salt Marsh	MTGSEINFNASTGNRRVMEHPLYVKYSSSEFSAIDASAVKADLNKVIATVESGEICAYLSWLLRTLALLA
Ga0181576_102545521	3300017985	Salt Marsh	MTTGFEINWHASTGNRRLMENPLYVKYSNSTFANITEAQVKADLNRVLATAESAEICAYLSWLLRTLALLA
Ga0181569_106591302	3300017986	Salt Marsh	ASTGNRRLMENPLYVKYSSSAFADITAVDVKADLNNVIATAESAEICAYLSWLLRTLALL
Ga0181572_107588781	3300018049	Salt Marsh	MVNGYPINWAITSDRLRLNPLYVKYSNSPFNGISAAAVKADLNEVLATAESAEICAY
Ga0181558_104341201	3300018417	Salt Marsh	VNASTGNRRLMENPLYVKYSSSEFSAIDAAAVKADFNKVIATVESAEICAYLSWLLRTLALLA
Ga0181567_106456261	3300018418	Salt Marsh	MTTGFEINWHASTGNRRLMENPLYVKYSNSTFSNIAAVDVKADLNGVLATAESAEICAYLAWLLRTLALLA
Ga0181591_106090802	3300018424	Salt Marsh	FEINWHASTGNRRLMENPLYVKYSNSTFANITEAQVKADLNGVLATAESAEICAYLSWLLRTLALLA
Ga0181594_101195841	3300020054	Salt Marsh	MTGYEINFNASTGNRRLMEHPLYVKYSSSEFSAIDASAVKADFNKVIATVESAEICAYLSWLLRTLALLA
Ga0181594_104869911	3300020054	Salt Marsh	PLEVDEVQGYPINWAASTANTRLMQNPLYIKYASSTFGTIQAVDVKADLNGVIATAESAEICAYLSWLLRTLALVA
Ga0181574_102712272	3300020056	Salt Marsh	VQGYPINWAASTANTRLMQNPLYVKYASSTFGSIQAVDVKADLNGVIATAESAEICAYLSWLLRTLALVA
Ga0181574_102853692	3300020056	Salt Marsh	MTTGFEINWHASTGNRRLMENPLYVKYSNSTFSNIAAVDVKADLNGVLATAESAEICAYLSWLLRTLALLA
Ga0181573_101975972	3300020184	Salt Marsh	MTTGFEINWHASTGNRRLMENPLYVKYSNSTFSNITEAQVKADLNGVLATAESAEICAYLSWLLRTLALLA
Ga0211622_102532292	3300020430	Marine	MGAGYPINWAVAPGNRHLLSNPLYVKYSNSTFANITAAQVKADLNGVLATAESAEICAYLSWLLRTLDLLA
Ga0206123_100882603	3300021365	Seawater	MGYEINWHTSTGNIRLMQNPLYVKYSNTTFGNIQVADVKTDLNGVLATAESAEICAYLSWLIRTLDLVA
Ga0222719_101803492	3300021964	Estuarine Water	VQGYPINWAASTANRRLMENPLYVKYSSSAFADITAIDVKADLNNVIATAESAEICAYLSWLLRTLALVA
Ga0224906_10066511	3300022074	Seawater	MLSPVGYPINWGISPSNSTITTHPLFIKYQSTPFGAINAADVKTDLSGVQPSAESAAICAYLS
Ga0224906_100665110	3300022074	Seawater	CLNMLSPVGYPINWGISPSNSTITTHPLFIKYQSTPFGAINAADVKTDLSGVQPSAESAAICAYLSWLLRTLALIA
Ga0255767_12980001	3300022914	Salt Marsh	YEINFNASTGNRRLMEHPLYVKYSSSEFSAIDASAVKADFNKVIATVESAEICAYLSWLLRTLALLA
Ga0255784_105484782	3300023108	Salt Marsh	MVNGYPINWAITSDRLRLNPLYVKYSNSPFNGISAAAVKADLNEVLATAESAEICAYLSWLL
Ga0255743_104460772	3300023110	Salt Marsh	GLLSAKGTASKSRPHRPLEVDEVQGYPINWAASTANTRLMQNPLYIKYASSTFGTIQAVDVKADLNGVIATAESAEICAYLSWLLRTLALVA
Ga0255760_103077383	3300023115	Salt Marsh	TASKSRPHRPLEVDEVQGYPINWAASTANTRLMQNPLYIKYASSTFGTIQAVDVKADLNGVIATAESAEICAYLSWLLRTLALVA
Ga0255762_103519461	3300023119	Salt Marsh	TGYEINFNASTGNRRLMENPLYVKYSSSEFSAIDASAVKADLNKVIATVESGEICAYLSWLLRTLALLA
Ga0255776_102597413	3300023173	Salt Marsh	LLEVVSLSGYEINWSASTGNRRLMENPLYVKYSSSAFADITAVDVKADLNNVIATAESAEICAYLSWLLRTLALLA
Ga0209716_10273013	3300025626	Pelagic Marine	VDEVQGYPINWAASTANTRLMQNPLYVKYASSTFGTIQAVDVKADLNGVIATAESAEICAYLSWLLRTLALVA
Ga0209716_10432352	3300025626	Pelagic Marine	MGAGYPINFALSPGGETRLKQNGLYVKYASTTFGAIDLDDVKADLAGVMATAQSAEICAYLSWVIRTKVLSTP
Ga0209716_10747842	3300025626	Pelagic Marine	MGAGYPINFALSPGGETRLKQNALYVKYASSTFGNIDLATLKADLAGVMATAQSAEICAYLSWLVRTKVLSAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093808

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences