Metagenome / Metatranscriptome Family F093804

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093804
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	67 residues
Representative Sequence	MANSEAKPVDDLHNRSLKKIGELDPKIFESNNEKEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN
Number of Associated Samples	78
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	92.38 %
% of genes near scaffold ends (potentially truncated)	16.98 %
% of genes from short scaffolds (< 2000 bps)	81.13 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (85.849 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (13.207 % of family members)
Environment Ontology (ENVO)	Unclassified (19.811 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.226 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.32% β-sheet: 27.37% Coil/Unstructured: 66.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00072	Response_reg	4.72
PF07452	CHRD	3.77
PF09587	PGA_cap	2.83
PF00775	Dioxygenase_C	0.94
PF14417	MEDS	0.94
PF01566	Nramp	0.94
PF00211	Guanylate_cyc	0.94
PF00144	Beta-lactamase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.94
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.94
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.94
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.94
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.79 %
Unclassified	root	N/A	13.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.85 %
Unclassified	root	N/A	13.21 %
Viruses	superkingdom	All Organisms → Viruses	0.94 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	85.85 %
Unclassified	root	N/A	13.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	68.87 %
Unclassified	root	N/A	13.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	68.87 %
Unclassified	root	N/A	13.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	63.21 %
Unclassified	root	N/A	13.21 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	5.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	63.21 %
Unclassified	root	N/A	13.21 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	5.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	63.21 %
Unclassified	root	N/A	13.21 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	3.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Nitrosopumilus	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus	63.21 %
Unclassified	root	N/A	13.21 %
unclassified Nitrososphaeraceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae	2.83 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilus sp.	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	63.21 %
Unclassified	root	N/A	13.21 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	2.83 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0863875	All Organisms → cellular organisms → Archaea	1642	Open in IMG/M
3300000787\|JGI11643J11755_11758525	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	612	Open in IMG/M
3300000787\|JGI11643J11755_11798588	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	933	Open in IMG/M
3300000858\|JGI10213J12805_10219201	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	914	Open in IMG/M
3300003992\|Ga0055470_10028350	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1104	Open in IMG/M
3300003997\|Ga0055466_10133935	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	699	Open in IMG/M
3300004157\|Ga0062590_102266976	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	570	Open in IMG/M
3300005093\|Ga0062594_102586186	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	559	Open in IMG/M
3300005339\|Ga0070660_100995296	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	708	Open in IMG/M
3300005539\|Ga0068853_102308964	Not Available	521	Open in IMG/M
3300006636\|Ga0075525_10030303	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1076	Open in IMG/M
3300006844\|Ga0075428_100349305	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	1587	Open in IMG/M
3300006844\|Ga0075428_100366387	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1545	Open in IMG/M
3300006845\|Ga0075421_100618264	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1270	Open in IMG/M
3300006845\|Ga0075421_100899226	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1010	Open in IMG/M
3300006876\|Ga0079217_10024682	All Organisms → cellular organisms → Archaea	2165	Open in IMG/M
3300006876\|Ga0079217_10058492	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1580	Open in IMG/M
3300006876\|Ga0079217_10084997	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1380	Open in IMG/M
3300006894\|Ga0079215_10025077	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	2060	Open in IMG/M
3300006894\|Ga0079215_10073673	All Organisms → cellular organisms → Archaea	1415	Open in IMG/M
3300006918\|Ga0079216_10048767	All Organisms → cellular organisms → Archaea	1819	Open in IMG/M
3300006918\|Ga0079216_10224340	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1051	Open in IMG/M
3300006918\|Ga0079216_10271781	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	983	Open in IMG/M
3300006918\|Ga0079216_10541177	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	782	Open in IMG/M
3300007004\|Ga0079218_11118125	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	806	Open in IMG/M
3300007790\|Ga0105679_10425713	All Organisms → cellular organisms → Archaea	1162	Open in IMG/M
3300009094\|Ga0111539_10170964	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	2539	Open in IMG/M
3300009100\|Ga0075418_11338310	Not Available	777	Open in IMG/M
3300009100\|Ga0075418_12005626	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	630	Open in IMG/M
3300009146\|Ga0105091_10075570	All Organisms → cellular organisms → Archaea	1521	Open in IMG/M
3300009146\|Ga0105091_10366744	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	712	Open in IMG/M
3300009157\|Ga0105092_10097631	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	1609	Open in IMG/M
3300009162\|Ga0075423_11609156	Not Available	698	Open in IMG/M
3300009168\|Ga0105104_10044427	All Organisms → cellular organisms → Archaea	2437	Open in IMG/M
3300009168\|Ga0105104_10141528	All Organisms → cellular organisms → Archaea	1300	Open in IMG/M
3300009553\|Ga0105249_11257056	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	812	Open in IMG/M
3300009789\|Ga0126307_10001168	All Organisms → cellular organisms → Archaea	17290	Open in IMG/M
3300009789\|Ga0126307_10042618	All Organisms → cellular organisms → Archaea	3528	Open in IMG/M
3300009789\|Ga0126307_11692391	Not Available	514	Open in IMG/M
3300009840\|Ga0126313_10015199	All Organisms → cellular organisms → Archaea	4995	Open in IMG/M
3300009840\|Ga0126313_10039367	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	3287	Open in IMG/M
3300009840\|Ga0126313_10095445	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	2178	Open in IMG/M
3300010036\|Ga0126305_11173242	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	530	Open in IMG/M
3300010037\|Ga0126304_11097492	Not Available	544	Open in IMG/M
3300010038\|Ga0126315_10318482	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	963	Open in IMG/M
3300010039\|Ga0126309_11126605	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	535	Open in IMG/M
3300010041\|Ga0126312_10030196	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	3620	Open in IMG/M
3300010042\|Ga0126314_10012408	All Organisms → cellular organisms → Archaea	4912	Open in IMG/M
3300010042\|Ga0126314_10259459	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1234	Open in IMG/M
3300010045\|Ga0126311_11792329	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	520	Open in IMG/M
3300011332\|Ga0126317_10587931	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	580	Open in IMG/M
3300011332\|Ga0126317_11041638	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	516	Open in IMG/M
3300012046\|Ga0136634_10106076	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1064	Open in IMG/M
3300013026\|Ga0170681_1025646	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1252	Open in IMG/M
3300013096\|Ga0157307_1016132	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1198	Open in IMG/M
3300014265\|Ga0075314_1117074	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	591	Open in IMG/M
3300017787\|Ga0183260_10244025	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1241	Open in IMG/M
3300017789\|Ga0136617_10166140	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1876	Open in IMG/M
3300018073\|Ga0184624_10031543	All Organisms → cellular organisms → Archaea	2051	Open in IMG/M
3300018073\|Ga0184624_10123916	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1121	Open in IMG/M
3300018432\|Ga0190275_10121208	All Organisms → cellular organisms → Archaea	2358	Open in IMG/M
3300018465\|Ga0190269_10020552	All Organisms → cellular organisms → Archaea	2971	Open in IMG/M
3300018465\|Ga0190269_10914835	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	650	Open in IMG/M
3300018465\|Ga0190269_11203401	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	595	Open in IMG/M
3300018465\|Ga0190269_11834608	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	519	Open in IMG/M
3300018466\|Ga0190268_11451473	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	592	Open in IMG/M
3300018469\|Ga0190270_10041856	All Organisms → cellular organisms → Archaea	3102	Open in IMG/M
3300018469\|Ga0190270_10788860	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	955	Open in IMG/M
3300018481\|Ga0190271_10658927	Not Available	1168	Open in IMG/M
3300018481\|Ga0190271_12160505	Not Available	664	Open in IMG/M
3300018920\|Ga0190273_11654655	Not Available	575	Open in IMG/M
3300019356\|Ga0173481_10199675	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	866	Open in IMG/M
3300020065\|Ga0180113_1103884	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	534	Open in IMG/M
3300020154\|Ga0196965_1127386	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	658	Open in IMG/M
3300024430\|Ga0196962_10003589	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	4896	Open in IMG/M
3300025537\|Ga0210061_1001387	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	3755	Open in IMG/M
3300025582\|Ga0209386_1028875	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1025	Open in IMG/M
3300025904\|Ga0207647_10677250	Not Available	564	Open in IMG/M
3300025944\|Ga0207661_11158105	Not Available	712	Open in IMG/M
3300026041\|Ga0207639_11840301	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	566	Open in IMG/M
3300027360\|Ga0209969_1064308	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	581	Open in IMG/M
3300027552\|Ga0209982_1075552	All Organisms → cellular organisms → Archaea	553	Open in IMG/M
3300027637\|Ga0209818_1085721	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	815	Open in IMG/M
3300027647\|Ga0214468_1014760	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	2177	Open in IMG/M
3300027647\|Ga0214468_1173639	Not Available	538	Open in IMG/M
3300027691\|Ga0209485_1226586	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	592	Open in IMG/M
3300027695\|Ga0209966_1144652	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	552	Open in IMG/M
3300027743\|Ga0209593_10183030	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	743	Open in IMG/M
3300027880\|Ga0209481_10213640	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	966	Open in IMG/M
3300027886\|Ga0209486_10452024	Not Available	789	Open in IMG/M
3300027907\|Ga0207428_10346762	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1093	Open in IMG/M
3300029695\|Ga0206087_1028518	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	617	Open in IMG/M
3300029695\|Ga0206087_1048987	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	522	Open in IMG/M
3300030902\|Ga0308202_1154652	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	513	Open in IMG/M
3300031547\|Ga0310887_10799313	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	592	Open in IMG/M
3300031547\|Ga0310887_10996182	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	534	Open in IMG/M
3300031548\|Ga0307408_101597106	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	619	Open in IMG/M
3300031824\|Ga0307413_10522174	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	958	Open in IMG/M
3300031852\|Ga0307410_10171388	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1636	Open in IMG/M
3300031944\|Ga0310884_10133748	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1260	Open in IMG/M
3300031995\|Ga0307409_102317697	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	566	Open in IMG/M
3300032004\|Ga0307414_10567498	All Organisms → Viruses → Predicted Viral	1014	Open in IMG/M
3300032005\|Ga0307411_11456583	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	628	Open in IMG/M
3300032013\|Ga0310906_10015154	All Organisms → cellular organisms → Archaea	3109	Open in IMG/M
3300032179\|Ga0310889_10360347	Not Available	714	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.36%
Host-Associated	Host-Associated	22.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.38%
Plants	Host-Associated → Plants	22.64%
Aquatic	Environmental → Aquatic	16.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.98%
Freshwater	Environmental → Aquatic → Freshwater	12.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.66%
Marine	Environmental → Aquatic → Marine	2.83%
Sediment	Environmental → Aquatic → Sediment	1.89%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.04%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.66%
Ice	Environmental → Aquatic → Freshwater → Ice	3.77%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.83%
Sand	Environmental → Terrestrial → Soil → Sand	2.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%
Loam	Environmental → Terrestrial → Soil → Loam	0.94%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.04%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	14.15%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.66%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	3.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.77%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.83%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.89%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	1.89%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.94%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.21%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	13.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	12.26%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.43%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.72%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.83%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.83%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.94%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300003992	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1	Environmental	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300006636	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-two	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012046	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ833 (21.06)	Environmental	Open in IMG/M
3300013026	Gypsum rock hypoendolithic microbial communities from the Atacama Desert, Chile - Cordon de Lila	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300014265	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020154	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_20	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025582	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-two (SPAdes)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027360	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300029695	Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_08638754	3300000033	Soil	MANSEPKPVGDLSNRTLKKIGELDPKIVEPNKVKEIEIKSWKKQKPEQWHVYLDXNTGHLRKWKLPN*
JGI11643J11755_117585251	3300000787	Soil	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDSNTGHLRK
JGI11643J11755_117985881	3300000787	Soil	MANSEPKPVGDLSNRTLKKIGELDPKIVEPNKVKEIEIKSWKKQKPEQWHVYLDTNTGHLRK
JGI10213J12805_102192013	3300000858	Soil	MANSEPKPVGDLSNRTLKKIGELDPKIVEPNKVKEIEIKSWKKQKPEQWHVYLDINTGHLRKWKLPN*
Ga0055470_100283501	3300003992	Natural And Restored Wetlands	MANSSAKPVDDLRNRSLKKIGELDLKTFESNKEKEIEIKSEKKQKLEKWHVYLDTNMGHLRKWKDTN*
Ga0055466_101339352	3300003997	Natural And Restored Wetlands	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKELEIKSEKKEKVEKGHIYLDSNTGHLNKWK*
Ga0062590_1022669762	3300004157	Soil	MANSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKLETWHVYFDTNTGHLRKWKDTN*
Ga0062594_1025861862	3300005093	Soil	MTNSEAKPVDDLHDRSLKKIGELDPKTFESNKEKEIEIKSEKKQKLEKWHVYFDTNTGHLRKWKDTN*
Ga0070660_1009952961	3300005339	Corn Rhizosphere	MANSEAKPVDDLHDRSLKKIGELDPKTFESNKEKEIEIKSEKKQKMERWHVYFDTNTGHLRKWKDTN*
Ga0068853_1023089641	3300005539	Corn Rhizosphere	MANSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKLEKWHVYFDTNTGHLRKWKDTN*
Ga0075525_100303032	3300006636	Arctic Peat Soil	MANPESKPVDDLSNRSLKKIGEIDPKLFESNNEKEIEVRSWKKQKSETWHIYLDTNTGHLRKWKSSSS*
Ga0075428_1003493052	3300006844	Populus Rhizosphere	MTNSEAKPVNDLSNRTLKKIGELDPKKLEPNNEKEIEIRSWKKQKVQKWHIYLDANTGHLRKWKDTN*
Ga0075428_1003663872	3300006844	Populus Rhizosphere	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEEEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN*
Ga0075421_1006182642	3300006845	Populus Rhizosphere	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN*
Ga0075421_1008992262	3300006845	Populus Rhizosphere	MTNSEAKPVNDLSNRTLKKIGELDPKKLEPNNEKEIEIRSWKKQKVEKWHIYLDANTGHLRKWKDTN*
Ga0079217_100246823	3300006876	Agricultural Soil	MANSEPKPVGDLSNRTLKKIGELDPKIFEPNKVKEIEIKSWKKQKPEQWHVYLDINTGHLKKWKLLN*
Ga0079217_100584923	3300006876	Agricultural Soil	MANSESKPVDGLYNRSLKKIGEIDPKLFESNNEEKEIEIKSWKKQKSEKWYAYLDTNTGHLRKWKSSSS*
Ga0079217_100849973	3300006876	Agricultural Soil	MGNSEPKPVRDLSNRILKKIGEIDPKLLESNNVKEIEVRSVKKQKSEIWQISLDNNSGHLRKWKRGN*
Ga0079215_100250774	3300006894	Agricultural Soil	MSNSEPKPVRDLSNRTLKKIGEIDPKSLESNNVKEIEIRSVKKQKSEIWHIYLDNNTGHLRKWKRGN*
Ga0079215_100736734	3300006894	Agricultural Soil	MANSEPKPVGDLSNRTLKKIGELDPKIFEPNKVKEIEIKSWKKQKPEQWHVYLDINTGHLRKWKLPN*
Ga0079216_100487672	3300006918	Agricultural Soil	MANSEPKPVGDLSNRTLKKIGELDPKIFEPNKVKEIEIKSWKKQKPEQWHVYLDINTGHLRKWKLSN*
Ga0079216_102243402	3300006918	Agricultural Soil	MSNSEPKPVRDLSNRILKKIGEIDPKLLESNNVKEIEVRSVKKQKSEIWQISLDNNSGHLRKWKRGN*
Ga0079216_102717814	3300006918	Agricultural Soil	MSNSEPKPVRDLSNRTLKKIGEIDPKSLESNNVKEIEIRSVKKQKSEIWHIYLDNNTG
Ga0079216_105411772	3300006918	Agricultural Soil	MANSESKPVDGLHNRSLKKIGEIDPKLFESNNEEKEIEIKSWKKQKSEKWHAYLDTNTGHLRKWKSSSS*
Ga0079218_111181252	3300007004	Agricultural Soil	MANNSEAKPVDDLNNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYFDTNTGHLRKWKDTN*
Ga0105679_104257133	3300007790	Soil	MANSSNSKPVDDLHNRSLKKIGEIDPKLFESSNEEKEIEIKSFKKQKSEKWHAYLDTHTGHLRKWKSSSS*
Ga0111539_101709642	3300009094	Populus Rhizosphere	MANSEAKPVDDLHDRSLKKIGELDPKTFESNKEKEIEIKSEKKQKLEKWHVYFDTNTGHLRKWKDTN*
Ga0075418_113383101	3300009100	Populus Rhizosphere	EMTNSEAKPVNDLSNRTLKKIGELDPKKLEPNNEKEIEIRSWKKQKVQKWHIYLDANTGHLRKWKDTN*
Ga0075418_120056262	3300009100	Populus Rhizosphere	MANNSEAKSVDDLHNRSLKKIGELDPKTFESNKEEEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN*
Ga0105091_100755703	3300009146	Freshwater Sediment	MANSEPKPVGDLSNRTLKKIGELDPKICEPNKIKEIEITSWKKQKSEKWHVYLDINTGHLRKWKLLN*
Ga0105091_103667441	3300009146	Freshwater Sediment	MTNNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN*
Ga0105092_100976312	3300009157	Freshwater Sediment	MANSEPKPVGDLSNRTLKKIGELDPKICEPNKIKEIEITSWKKQKSEKWHVYLDINTGHLRKWKLFN*
Ga0075423_116091561	3300009162	Populus Rhizosphere	NSEAKPVDDLHDRSLKKIGELDPKTFESNKEKEIEIKSEKKQKLEKWHVYFDTNTGHLRKWKDTN*
Ga0105104_100444274	3300009168	Freshwater Sediment	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDIN*
Ga0105104_101415283	3300009168	Freshwater Sediment	MDNSEPKPVEDLSNRTLKKIGELDPKIFEPNKVKEIEIKSWKKQKPEQWHIYLDIDTGHLRKWKLPN*
Ga0105249_112570561	3300009553	Switchgrass Rhizosphere	MANSEAKPVDDLNNRSLKNIGELNPKTFESNKEKEIEIKSEKKQKMERWHVYFDTNTGHLRKWKDTN*
Ga0126307_1000116814	3300009789	Serpentine Soil	MVNSEPKPVRDLSNRTLKKIGEIDPKLLESNNVKEIEVRSVKKQKSEIWQIYLDKNTGHLRKWKRGN*
Ga0126307_100426181	3300009789	Serpentine Soil	MANSDEANPVNDLSNRSLQKIGELNPKLLESNNEKEIEIKSEKKQKVEKWHVYLDTNTGHLRKWKDTN*
Ga0126307_116923911	3300009789	Serpentine Soil	PVNDLSNRSLQKIGELNPKLLESNNEKEIEIKSWKKQKVEKWHVYLDTNTGHLRKWKDTN
Ga0126313_100151998	3300009840	Serpentine Soil	MANSDEANPVNDLSNRSLQKIGELNPKLLESNNEKEIEIKSWKKQKLEKWHVYLDTNTGHLRKWKDTN*
Ga0126313_100393673	3300009840	Serpentine Soil	MVNSEPKPVRDLSNRTLKKIGEIDPKLLESNNVKEIEVRSVKKQKSEIWQIYLDNNTGHLRKWKRGN*
Ga0126313_100954453	3300009840	Serpentine Soil	MANSSAKPVDDLHNRSVKKIGELNPKTFESNNEKEIEIKSEKKQKVEKWHVYLDTNTGHLRKWKDTN*
Ga0126305_111732422	3300010036	Serpentine Soil	MANSSANPVDDLHNRSVKKIGELDPKTFESNNEKEIEIKSEKKQKVEKWHVYLDTNTGHLRKWKDTN*
Ga0126304_110974921	3300010037	Serpentine Soil	NSDEANPVNDLSNRSLQKIGELNPKLLESNNEKEIEIKSWKKQKVEKWHVYLDTNTGHLRKWKDTN*
Ga0126315_103184822	3300010038	Serpentine Soil	MANSSANPVDDLHNRSVKKIGELDPKIFESSNEKEIEIKSEKKQKVEKWHVYLDTNTGHLRKWKDTN*
Ga0126309_111266052	3300010039	Serpentine Soil	MANSESKPVDDLSNRSLKKIGEIDPELFESNNEKEIEIRSWKKQKSETWHIYLDTNTGHLRKWKSSSS*
Ga0126312_100301964	3300010041	Serpentine Soil	MANSSANPVDDLHNRSVKKIGELNPKTFESNNEKEIEIKSEKKQKVEKWHVYLDTNTGHLRKWKDTN*
Ga0126314_100124081	3300010042	Serpentine Soil	MTNSDEANPVNDLSNRSLQKIGELNPKLLESNNEKEIEIKSWKKQKLEKWHVYLDTNTGHLRKWK
Ga0126314_102594591	3300010042	Serpentine Soil	MANSSAKPVDDLHNRSVKKIGELDPKIFESSNEKEIEIKSEKKQKVEKWHVYLDTNTGHLRKWKDTN*
Ga0126311_117923291	3300010045	Serpentine Soil	MASSESKPVDHLSNRSLKKIGEIDPKLFESNNEKEIEIRSWKKQKSETWHIYLDTNTGHLRKWKSSSS
Ga0126317_105879312	3300011332	Soil	MANSSAKPVDDLHNRSVTKIGELDPKTFKSNNEKEIEIKSEKKQKVEKWHVYLDTNTGHLRKWKDTN*
Ga0126317_110416382	3300011332	Soil	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDPNTGHLRKWKDTN*
Ga0136634_101060761	3300012046	Polar Desert Sand	MTNNSPEPKPVGDLSHRIVKKIGEIDPQSCDPNNKKEIDLRSWKKQRSEKWQVYLDSNTGHLRQLKLH*
Ga0136634_101890111	3300012046	Polar Desert Sand	MTNNSPEPKPVGDLSHRTLKKIGEIDPKSCDPNTKKEMDFRSWKKQKSEKWQVYLDSNTGHLRQLKLR*
Ga0170681_10256461	3300013026	Rock	MTDNSPDPKPVGDLSHRTLKKIGEIDPQSFEPNNKREMDFHSWKKQKSEKWQVYLDGNTGHLRQLKLR
Ga0157307_10161322	3300013096	Soil	MANNSEAKPVDDLHNRSLKMIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYIDSNRGHLRKWKDTN*
Ga0075314_11170741	3300014265	Natural And Restored Wetlands	MANSEAKPVDDLHNRSLKKIGELDPKIFESNNEKEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN*
Ga0183260_102440253	3300017787	Polar Desert Sand	MTNNSTEPKPVGDLSHRTLKKIGEIDPQVCDPNNKVEIDLRSWKKQKSEKWQVYLDGNTGHLRQLKLR
Ga0136617_101661401	3300017789	Polar Desert Sand	MTDNSTDPKPVGDLSHRTLKKIGEIDPQACNPNNKVEIDLRSWKKQKSEKWQVYLDGNTGHLRQLKLR
Ga0184624_100315432	3300018073	Groundwater Sediment	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDPNTGHLRKWKDTN
Ga0184624_101239162	3300018073	Groundwater Sediment	MANSESKPVDDLSNRSLKKIGEIDPKLFESNNEKEIEVRSWKKQKSETWHIYLDTHTGHLRKWKSSSS
Ga0190275_101212083	3300018432	Soil	MTNNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN
Ga0190269_100205523	3300018465	Soil	MANSEPKPVGDLSNRTLKKIGELDPKIVEPNKVKEIEIKSWKKQKPEQWHVYLDINTGHLRKWKLPN
Ga0190269_109148352	3300018465	Soil	MTNNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEMEIKSEKKQKVEKWHVYLDSNTGHLRKWKDIN
Ga0190269_112034011	3300018465	Soil	MANSESKPVDDLSNRSLKKIGEIDPKLFESNNEKEIEIRSWKKQKSETWHIYLDTNTGHLRKWKSSSS
Ga0190269_118346081	3300018465	Soil	MSNPETKPVRDLSNRTLKKIGEIDPKSLESNNVKEIEIRSAKKQKSEIWKIYLDNNTGHLRKWKRGN
Ga0190268_114514732	3300018466	Soil	MANSESKPVDDLSNRSLKKIGEIDPKLFESNNEKEIEVRSWKKQKSETWHIYLDTNTGHLRKWKKSSS
Ga0190270_100418563	3300018469	Soil	MANSEPKPVGDLSNRTLKKIGELDPKIFEPNKVKEIEIKSWKKQKPEQWHVYLDINTGHLRKWKLPN
Ga0190270_107888602	3300018469	Soil	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN
Ga0190271_106589273	3300018481	Soil	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNMEKEIEIKSEKKQKVEKWHVYLDPNTGHLRKWKGTN
Ga0190271_121605052	3300018481	Soil	GGRVEMTNNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEINSEKKQKVEKWHVYLDSNTGHLRKWKDTN
Ga0190273_116546552	3300018920	Soil	MANSSAKPVDDFHNRSLKKIRELDLKTFEPNKEKEIEIKSEKKQKLEKWHVYLDTNTSHLRKWKDTN
Ga0173481_101996752	3300019356	Soil	MANSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKLEKWHVYFDTNTGHLRKWKDTN
Ga0180113_11038841	3300020065	Groundwater Sediment	MANSESKPVDDLSNRSXKKIGEIDPKLFESNNEKEIEVRSWKKQKSETWHIYLDTNTGHLRKWKDTN
Ga0196965_11273861	3300020154	Soil	MANSESKPVDDLHNRSLKKIGEIDPKLFESNNEEKEIEIKSWKKQKSEKWYAYLDTNTGHLRKWKSSSS
Ga0196962_100035896	3300024430	Soil	MSNSEPKPVRDLSNRSLKKIGEIDPKSLESNNVKEIEIRSVKKQKSEIWHIYLDNNTGHLRKWKRGN
Ga0210061_10013872	3300025537	Natural And Restored Wetlands	MANSSAKPVDDLRNRSLKKIGELDLKTFESNKEKEIEIKSEKKQKLEKWHVYLDTNMGHLRKWKDTN
Ga0209386_10288751	3300025582	Arctic Peat Soil	MANPESKPVDDLSNRSLKKIGEIDPKLFESNNEKEIEVRSWKKQKSETWHIYLDTNTGHLRKWKSSSS
Ga0207647_106772501	3300025904	Corn Rhizosphere	MTNSEAKPVDDLHDRSLKKIGELDPKTFESNKEKEIEIKSEKKQKLETWHVYFDTNTGHLRKWKDTN
Ga0207661_111581052	3300025944	Corn Rhizosphere	MANSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKMERWHVYFDTNTGHLRKWKDTN
Ga0207639_118403012	3300026041	Corn Rhizosphere	MTNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKLEKWHVYFDTNTGHLRKWKDTN
Ga0209969_10643081	3300027360	Arabidopsis Thaliana Rhizosphere	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEEEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN
Ga0209982_10755522	3300027552	Arabidopsis Thaliana Rhizosphere	PKPVGDLSNRTLKKIGELDPKIVEPNKVKEIEIKSWKKQKPEQWHVYLDINTGHLRKWKLPN
Ga0209818_10857212	3300027637	Agricultural Soil	MSNSEPKPVRDLSNRTLKKIGEIDPKLLESNNVKEIEVRSVKKQKSEIWQISLDNNSGHL
Ga0214468_10147602	3300027647	Soil	MANSEPKPVGDLSNRTLKKIGELDPKICEPNKIKEIEITSWKKQKSEKWHVYLDINTGHLRKWKLLN
Ga0214468_11736392	3300027647	Soil	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTS
Ga0209485_12265862	3300027691	Agricultural Soil	MSNSEPKPVRDLSNRILKKIGEIDPKLLESNNVKEIEVRSVKKQKSEIWQISLDNNSGHLRKWKRGN
Ga0209966_11446522	3300027695	Arabidopsis Thaliana Rhizosphere	MANSEPKPVGDLSNRTLKKIGELDPKIVEPNKVKEIEIKSWKKQKPEQWHVYLDIN
Ga0209593_101830302	3300027743	Freshwater Sediment	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDIN
Ga0209481_102136401	3300027880	Populus Rhizosphere	MTNSEAKPVNDLSNRTLKKIGELDPKKLEPNNEKEIEIRSWKKQKVEKWHIYLDANTGHLRKWKDTN
Ga0209486_104520241	3300027886	Agricultural Soil	KPVDGLHNRSLKKIGEIDPKLFESNNEEKEIEIKSWKKQKSEKWHAYLDTNTGHLRKWKSSSS
Ga0207428_103467621	3300027907	Populus Rhizosphere	MTNSEAKPVDDLHDRSLKKIGELDPKTFESNKEKEIEIKSEKKQKLEKWHVYFDTNTGHLRKWKDTN
Ga0206087_10285181	3300029695	Soil	MANSEAKPVDDISNRSLKKIGELDPKLLESNNEKEIEIKSWKKQKLEKWHVYIDTNTGHLRKWKDTN
Ga0206087_10489871	3300029695	Soil	MANSESKPVDDLHNRSLKKIGEIDPKLFESNNEEKEIEIKSWKKQKSEKWYVYLDTNTGHLRK
Ga0308202_11546521	3300030902	Soil	MSNNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN
Ga0310887_107993131	3300031547	Soil	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEEEIEIKSEKKQKVEKWHVYLDSNTGH
Ga0310887_109961821	3300031547	Soil	DLHNRSLKKIGELDPKTFESNKEEEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN
Ga0307408_1015971061	3300031548	Rhizosphere	MANSSAKPVDDLHNRSVKKIGELDPKTFESNNEKEIEIKSEKKQKVEKWHVYLDTNTGHLRKWKDTN
Ga0307413_105221743	3300031824	Rhizosphere	MANSDEANPVNDLSNRSLQKIGELNPKLLESNNEKEIEIKSWKKQKLEKWHVYLDTNTGHLRKWKDTN
Ga0307410_101713882	3300031852	Rhizosphere	MTNSDEANPVNDLSNRSLQKIGELNPKLLESNNEKEIEIKSWKKQKLEKWHVYLDTNTGHLRKWKDTN
Ga0310884_101337484	3300031944	Soil	MANNSEAKSVDDLHNRSLKKIGELDPKTFESNKEEEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN
Ga0307409_1023176972	3300031995	Rhizosphere	MANSSAKPVDDLHNRSVTKIGELDPKTFKSNNEKEIEIKSEKKQKVEKWHVYLDTNTGHLRKWKDTN
Ga0307414_105674982	3300032004	Rhizosphere	MANSDEANPVNDLSNRSLQKIGELNPKLLESKNVKEIEIKSWKKQKLEKWHVYLDTNTGHLRKWKDTN
Ga0307411_114565831	3300032005	Rhizosphere	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEKEIEIKSEKKQKVEKWHVYLDSNIGHLRKWKDTN
Ga0310906_100151542	3300032013	Soil	MANNSEAKPVDDLHNRSLKKIGELDPKTFESNKEEEIEIKSEKKQKVEKWHVYLDPNTGHLRKWKDTN
Ga0310889_103603471	3300032179	Soil	MANNSDAKPVDNLHNRSLKKIGELDPKTFESNKEEEIEIKSEKKQKVEKWHVYLDSNTGHLRKWKDTN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093804

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences