NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F093768

Metagenome Family F093768

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093768
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 71 residues
Representative Sequence MPLLPQAVSRPLRKLNPTPAGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTAQGAVINAVTQ
Number of Associated Samples 73
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 10.38 %
% of genes near scaffold ends (potentially truncated) 20.75 %
% of genes from short scaffolds (< 2000 bps) 68.87 %
Associated GOLD sequencing projects 67
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (89.623 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(26.415 % of family members)
Environment Ontology (ENVO) Unclassified
(74.528 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(78.302 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 20.41%    β-sheet: 18.37%    Coil/Unstructured: 61.22%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF00535Glycos_transf_2 3.77
PF02557VanY 1.89
PF13481AAA_25 0.94
PF00149Metallophos 0.94
PF067253D 0.94
PF13385Laminin_G_3 0.94
PF13489Methyltransf_23 0.94
PF11651P22_CoatProtein 0.94
PF03016Exostosin 0.94
PF05345He_PIG 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG1876LD-carboxypeptidase LdcB, LAS superfamilyCell wall/membrane/envelope biogenesis [M] 1.89
COG2173D-alanyl-D-alanine dipeptidaseCell wall/membrane/envelope biogenesis [M] 1.89


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A89.62 %
All OrganismsrootAll Organisms10.38 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004461|Ga0066223_1284760Not Available546Open in IMG/M
3300004772|Ga0007791_10103298Not Available860Open in IMG/M
3300005581|Ga0049081_10015631Not Available2869Open in IMG/M
3300005805|Ga0079957_1217081Not Available910Open in IMG/M
3300005940|Ga0073913_10000711Not Available5148Open in IMG/M
3300005956|Ga0073920_1032909Not Available659Open in IMG/M
3300006639|Ga0079301_1089066Not Available955Open in IMG/M
3300008450|Ga0114880_1000975Not Available17571Open in IMG/M
3300009151|Ga0114962_10570863Not Available590Open in IMG/M
3300009152|Ga0114980_10007509Not Available7136Open in IMG/M
3300009155|Ga0114968_10005400Not Available9486Open in IMG/M
3300009155|Ga0114968_10093124Not Available1852Open in IMG/M
3300009159|Ga0114978_10002629Not Available14797Open in IMG/M
3300009159|Ga0114978_10136843Not Available1587Open in IMG/M
3300009160|Ga0114981_10004028All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium9250Open in IMG/M
3300009161|Ga0114966_10127717Not Available1678Open in IMG/M
3300009164|Ga0114975_10073422Not Available1994Open in IMG/M
3300009184|Ga0114976_10181050Not Available1168Open in IMG/M
3300010160|Ga0114967_10602361Not Available528Open in IMG/M
3300010354|Ga0129333_10118465Not Available2440Open in IMG/M
3300010354|Ga0129333_10275604Not Available1510Open in IMG/M
3300010354|Ga0129333_11361570Not Available585Open in IMG/M
3300010354|Ga0129333_11706144Not Available512Open in IMG/M
3300010370|Ga0129336_10147967Not Available1358Open in IMG/M
3300010370|Ga0129336_10168444Not Available1259Open in IMG/M
3300011995|Ga0153800_1027069Not Available597Open in IMG/M
3300013006|Ga0164294_10003266All Organisms → cellular organisms → Bacteria14469Open in IMG/M
3300013006|Ga0164294_10988654Not Available565Open in IMG/M
(restricted) 3300013132|Ga0172372_10831279Not Available570Open in IMG/M
(restricted) 3300013133|Ga0172362_10099133Not Available2193Open in IMG/M
(restricted) 3300013133|Ga0172362_10349475Not Available1038Open in IMG/M
3300013372|Ga0177922_10066173Not Available824Open in IMG/M
3300017701|Ga0181364_1073341Not Available523Open in IMG/M
3300017722|Ga0181347_1184465Not Available555Open in IMG/M
3300017723|Ga0181362_1028030Not Available1201Open in IMG/M
3300017736|Ga0181365_1123606Not Available620Open in IMG/M
3300017761|Ga0181356_1022248Not Available2320Open in IMG/M
3300017774|Ga0181358_1114624Not Available953Open in IMG/M
3300017778|Ga0181349_1026644Not Available2340Open in IMG/M
3300017780|Ga0181346_1101633Not Available1116Open in IMG/M
3300017780|Ga0181346_1236754Not Available644Open in IMG/M
3300017780|Ga0181346_1237922Not Available641Open in IMG/M
3300017784|Ga0181348_1075859Not Available1339Open in IMG/M
3300017784|Ga0181348_1289740Not Available552Open in IMG/M
3300017785|Ga0181355_1062752Not Available1567Open in IMG/M
3300017785|Ga0181355_1175019Not Available855Open in IMG/M
3300017785|Ga0181355_1343057Not Available551Open in IMG/M
3300017788|Ga0169931_10229313Not Available1543Open in IMG/M
3300019784|Ga0181359_1000785Not Available7645Open in IMG/M
3300019784|Ga0181359_1041818Not Available1776Open in IMG/M
3300019784|Ga0181359_1066525Not Available1371Open in IMG/M
3300019784|Ga0181359_1076585Not Available1260Open in IMG/M
3300019784|Ga0181359_1214517Not Available610Open in IMG/M
3300020084|Ga0194110_10462477Not Available839Open in IMG/M
3300021091|Ga0194133_10122153Not Available1931Open in IMG/M
3300021091|Ga0194133_10211403Not Available1281Open in IMG/M
3300021519|Ga0194048_10168222Not Available819Open in IMG/M
3300021962|Ga0222713_10051674Not Available3135Open in IMG/M
3300022190|Ga0181354_1148876Not Available734Open in IMG/M
3300022190|Ga0181354_1199611Not Available597Open in IMG/M
3300022407|Ga0181351_1018654Not Available2919Open in IMG/M
3300022407|Ga0181351_1047131Not Available1808Open in IMG/M
3300022407|Ga0181351_1211095Not Available639Open in IMG/M
3300022752|Ga0214917_10004523All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae15410Open in IMG/M
3300022752|Ga0214917_10004968All Organisms → cellular organisms → Bacteria → Proteobacteria14432Open in IMG/M
3300022752|Ga0214917_10025918Not Available4584Open in IMG/M
3300023174|Ga0214921_10004964All Organisms → cellular organisms → Bacteria19120Open in IMG/M
3300023174|Ga0214921_10039820Not Available4366Open in IMG/M
3300023179|Ga0214923_10002730Not Available22985Open in IMG/M
3300023179|Ga0214923_10068514Not Available2564Open in IMG/M
3300026902|Ga0209851_1017273Not Available730Open in IMG/M
3300027499|Ga0208788_1111974Not Available635Open in IMG/M
3300027608|Ga0208974_1000140All Organisms → cellular organisms → Bacteria31372Open in IMG/M
3300027659|Ga0208975_1081035Not Available960Open in IMG/M
3300027712|Ga0209499_1188284Not Available736Open in IMG/M
(restricted) 3300027728|Ga0247836_1056724Not Available2190Open in IMG/M
(restricted) 3300027728|Ga0247836_1186246Not Available846Open in IMG/M
(restricted) 3300027730|Ga0247833_1113650Not Available1164Open in IMG/M
(restricted) 3300027730|Ga0247833_1122438Not Available1097Open in IMG/M
3300027741|Ga0209085_1002388Not Available10722Open in IMG/M
3300027759|Ga0209296_1008986Not Available6095Open in IMG/M
3300027759|Ga0209296_1074015Not Available1697Open in IMG/M
3300027763|Ga0209088_10000298All Organisms → cellular organisms → Bacteria36185Open in IMG/M
3300027763|Ga0209088_10083927Not Available1486Open in IMG/M
3300027770|Ga0209086_10002539All Organisms → cellular organisms → Bacteria14196Open in IMG/M
3300027770|Ga0209086_10083027Not Available1683Open in IMG/M
3300027782|Ga0209500_10067512Not Available1850Open in IMG/M
3300027798|Ga0209353_10163889Not Available986Open in IMG/M
3300027808|Ga0209354_10035781All Organisms → Viruses → Predicted Viral1991Open in IMG/M
3300027808|Ga0209354_10308352Not Available629Open in IMG/M
3300027963|Ga0209400_1058118Not Available1964Open in IMG/M
3300027973|Ga0209298_10003114All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage10036Open in IMG/M
(restricted) 3300028114|Ga0247835_1123510Not Available973Open in IMG/M
(restricted) 3300028557|Ga0247832_1031291Not Available3278Open in IMG/M
(restricted) 3300029268|Ga0247842_10386311Not Available730Open in IMG/M
(restricted) 3300029286|Ga0247841_10331437Not Available1032Open in IMG/M
3300031578|Ga0307376_10387144Not Available921Open in IMG/M
3300031707|Ga0315291_10107229Not Available3000Open in IMG/M
3300031707|Ga0315291_11408253Not Available555Open in IMG/M
3300031746|Ga0315293_10073986Not Available2922Open in IMG/M
3300031885|Ga0315285_10702263Not Available651Open in IMG/M
3300031952|Ga0315294_10258345Not Available1696Open in IMG/M
3300031952|Ga0315294_10354181Not Available1391Open in IMG/M
3300031999|Ga0315274_11130378Not Available784Open in IMG/M
3300032053|Ga0315284_11434714Not Available738Open in IMG/M
3300032092|Ga0315905_10008711All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales10267Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake26.42%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake20.75%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater17.92%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment9.43%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient5.66%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake3.77%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic2.83%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand2.83%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.89%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface1.89%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.94%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater0.94%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.94%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.94%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.94%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.94%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300004772Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5MEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300005940Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14EnvironmentalOpen in IMG/M
3300005956Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_23-Sept-14EnvironmentalOpen in IMG/M
3300006639Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11EnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009151Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaGEnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009160Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaGEnvironmentalOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300010160Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300011995Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300013006Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaGEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013133 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2EnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017723Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020084Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200mEnvironmentalOpen in IMG/M
3300021091Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40mEnvironmentalOpen in IMG/M
3300021519Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5mEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300023179Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510EnvironmentalOpen in IMG/M
3300026902Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_14-Oct-14 (SPAdes)EnvironmentalOpen in IMG/M
3300027499Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027712Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027728 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14mEnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300027741Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027770Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027973Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028114 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_13.5mEnvironmentalOpen in IMG/M
3300028557 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_4mEnvironmentalOpen in IMG/M
3300029268 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_19mEnvironmentalOpen in IMG/M
3300029286 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_18mEnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300031707Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20EnvironmentalOpen in IMG/M
3300031746Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20EnvironmentalOpen in IMG/M
3300031885Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36EnvironmentalOpen in IMG/M
3300031952Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40EnvironmentalOpen in IMG/M
3300031999Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300032092Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0066223_128476013300004461MarineMAENPSPPKLPGKSQPLRTIRATPSGVGISSDYINSIIDRIEDLVLVAQSQKPVAGNNITVNFTSQGAV
Ga0007791_1010329823300004772FreshwaterMAENPSPPKLPGKSQPLRTIRATPHGVGISSDYINSIIDRIEDLVLVAQNQKPVAGNNITINFTPQGAVINAVTQ*
Ga0049081_1001563133300005581Freshwater LenticMAENPSPSKLPGKSQPLRTIRPTPDGVGISADYINSIIDRIEDLVLVAQSQKPIAGNNIQINFTAQGAVINAVTQ*
Ga0079957_121708123300005805LakeMAENPSPPKLPGNTQPIRPIRPTPEGVGISAEYINSIIERIEDLVLVAQSQKPIAGNNVTVNFTAQGAVINAVTQ*
Ga0073913_1000071133300005940SandMPLLPQAVSRPLRKLNPTPAGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTAQGAVINAVTQ*
Ga0073920_103290923300005956SandMPLLPQAVSRPLRKLNPTPAGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTAQGAVINAVTQ*LHPKSCL*
Ga0079301_108906623300006639Deep SubsurfaceMPLLPQTASRPLRFVTPPASGVGITAEYINDIIDRIEHLVQVAQLQKPIAGNNITINYTAQGAVINADE*
Ga0114880_1000975173300008450Freshwater LakeMAENPSPPKLPGKSQPLRTIRPTPDGVGISADYINSIIQRIEDLVQVAQSQKPIAGNNIQINFTAQGAVINATE*
Ga0114962_1057086323300009151Freshwater LakeMAENPSPPKLPGKSQPLRTIRATPNGIGISSDYINSIIDRIEDLVLVAQSQKPVAGNNITVNFTPQGAVINAVTQ*
Ga0114980_1000750973300009152Freshwater LakeMAENPSPPKQPGKSQPLRTIRTSPNGVGISSDYINSIIDRIEDLVLVAQNQKPVAGNNITVNFTPQGAVINAVTQ*
Ga0114968_10005400123300009155Freshwater LakeMPLLPQSVSRPLRKLNPTPAGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQVNYTAQGAVINAVTQ*
Ga0114968_1009312423300009155Freshwater LakeMAENPSPPKLPGKSQPLRQIRTSPNGVGISVDYINTIIDRIEDLVLVAQNQKPVPGNNIQINFTAQGAVINAVTQ*
Ga0114978_10002629133300009159Freshwater LakeMAENPPNAVISSRSQPLRAIRPTPDGVAITTDYLNTIINRIEDLVLIAKSQKPIPGNNVQINFTSQGAVINAVTQ*
Ga0114978_1013684333300009159Freshwater LakeMAENPSPPKLPGKSQPLRPIRQSPNGVGISSDYINSIIDRIEDLILVAQNQKPVAGNNITVNFTPQGAVINAVTQ*
Ga0114981_10004028103300009160Freshwater LakeMSLLPQSVSRPLRKINPTPAGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINYTAQGAVINAVVE*
Ga0114966_1012771723300009161Freshwater LakeMAENPSPQKLPGKSQPLRQIRTSPNGVGISVDYINTIIDRIEDLVLVAQNQKPVPGNNIQINFTAQGAVINAVTQ*
Ga0114975_1007342223300009164Freshwater LakeMAKNPLPPPLPGASRPLRIIKPTAGGVGISVEFINSIIARIENLVAIAQSQKPIAGNNIRINFTPEGAVIEAVSSDCT*
Ga0114976_1018105033300009184Freshwater LakeMAENPSPPKLPGKSQPLRPIRQSPNGVGISSDYINSIIDRIEDLILVAQNQKPVAGNNITVNFTPQGAVINAVT
Ga0114967_1060236113300010160Freshwater LakeMPLLPQSVSRPLRKLNPTPNGVGIGAEYINSIISRIEDLVLTAQSQKPIAGDNITINYTDKGAVINAVTQ*
Ga0129333_1011846523300010354Freshwater To Marine Saline GradientMKTAPLRLINPPADGVGITAEYLNDIIERIEDLVRTAEEQRPIAGNNIQINYTAEGAVINSLV*
Ga0129333_1027560433300010354Freshwater To Marine Saline GradientMKTAPLRLLNPPADGVGITAEYVNDIIERIEDLVRTAEEQRPIAGNNIQINYTADGAVINSLV*
Ga0129333_1136157023300010354Freshwater To Marine Saline GradientMAENPSPPRLPGNSQPLRPIRPTPDGVGISAEYMNSIIERIEDLVLVAQSQKPIAGNNVTVNFTAQGAVINAV
Ga0129333_1170614413300010354Freshwater To Marine Saline GradientMAENPSPPKLPGKSQPLRTIRATPDGVGISVDYINTIIDRIEDLVQVAQTQKPIAGNNITVNFTPQGAVINAVTQ*
Ga0129336_1014796723300010370Freshwater To Marine Saline GradientMAENPSPPRLPGNSQPLRPIRPTPDGVGISAEYMNSIIERIEDLVLVAQSQKPIAGNNVTVNFTAQGAVINAVTQ*
Ga0129336_1016844423300010370Freshwater To Marine Saline GradientMKTAPLRLLNPPADGVGITAEYVNDIIERIEDLVRTAEEQRPIAGNNIQINYTAEGAVINSLV*
Ga0153800_102706923300011995FreshwaterMAENPSPPKLPGKSQPLRTIRATPDGVGISSDYINSIIDRIEDLVLVAQNQKPIAGNNIQINFTAQGAVINAVTQ*
Ga0164294_1000326633300013006FreshwaterMPLLPQAVSRPLRKLNPTPAGVGIGAEYINSIIDRIEQLVLVAELQKPIAGNNITVNYTANGVVISLAGFSS*
Ga0164294_1098865413300013006FreshwaterVMPLLPQAVSRPLRKINPTPSGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINFTDKGAVINAVVE*
(restricted) Ga0172372_1083127913300013132FreshwaterMAENPSPPKLPGQTQPLRPIRPTLEGVGISAEYMNSIIERIEDLVLIAQSQKPIAGNNVTVNFTAQGAVINA
(restricted) Ga0172362_1009913333300013133SedimentMAENPSPPKLPGQTQPLRTIRPTPEGVGISAEYMNSIIERIEDLVLIAQSQKPIAGNNVTVNFTAQGAVINAVTQ*
(restricted) Ga0172362_1034947523300013133SedimentMRTSPLRPIRETPAGVALSAEFFNDIITRVEDLVLQAQLQKPIAGNNVQIDYTANGAVINAVTAG*
Ga0177922_1006617323300013372FreshwaterMAENPSPPKLPGKSQSLRTIRITPGGVGISSDYINSIIDRIEDLVQVAQSQKPIPGNNIQINFTAQGAVINAVTQ*
Ga0181364_107334123300017701Freshwater LakeSPPKLPGKSQPLRPIRASPNGVGISSDYINSIIDRIEDLVLVAQNQKPVAGNNITVNFTPQGAVINAVTQ
Ga0181347_118446513300017722Freshwater LakeMALLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTGEGA
Ga0181362_102803023300017723Freshwater LakeMAENPSPPKLPGKSQPLRTIRATPNGVGISSDYMNSIIERIEDLVQVAQSQKPIAGNNIQINFTAQGAVINAVTQ
Ga0181365_112360613300017736Freshwater LakeMPLLPQAVSRPLRKINPTPAGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINY
Ga0181356_102224823300017761Freshwater LakeMAVLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTAEGAVINAVTE
Ga0181358_111462423300017774Freshwater LakeMPLLPQAVSRPLRKINPTPSGVGIGAEYINSIIDRIEDLVLTAQSQRPVAGNNIQINYTAQGAVINAVTQ
Ga0181349_102664433300017778Freshwater LakePPKLPGKSQSLRTIRPTPDGVGISADYINSIIERIEDLVLVAQNQKPVAGNNIQINFTTQGAVINAVTQ
Ga0181346_110163323300017780Freshwater LakeMAENPSPPKLPGKSQPLRPIRASPNGFGISSDYINSIIDRIEDLVLVAQNQKPVAGNNITVNFTPQGAVINAVTQ
Ga0181346_123675423300017780Freshwater LakeMALLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYT
Ga0181346_123792223300017780Freshwater LakeMPLLPQAVSRPLSKINPTPSGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINYTAQGAVINAVVE
Ga0181348_107585923300017784Freshwater LakeMPLLPQAVSRPLSKINPTPSGVGIGAEYINSIIDRIEDLVLTAQSQRPVAGNNIQINYTAQGAVINAVTQ
Ga0181348_128974023300017784Freshwater LakeSEVMAENPSPPKLPGKSQPLRTIRPTPDGVGISAEYINSIIDRIEDLVLVAQNQKPVAGNNIQINFTAQGAVINATE
Ga0181355_106275223300017785Freshwater LakeMALLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTGEGAVINAVTQ
Ga0181355_117501923300017785Freshwater LakeMPILPQAVSRPLRKLNPTPAGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTAQGAVINAVVE
Ga0181355_134305723300017785Freshwater LakePGKSQPLRTIRATPDGVGISSDYINSIIDRIEDLVLVAQNQKPVAGNNITINFTGQGAVINAVTQ
Ga0169931_1022931313300017788FreshwaterMAENPSPPRLPGQTQPLRPIRPTPEGVGISAEYMNSIIERIEDLVLVAQSQKPIAGNNITVNFTAQGAVINAVTQ
Ga0181359_100078543300019784Freshwater LakeMALLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTAEGAVINAVTE
Ga0181359_104181823300019784Freshwater LakeMAENPSPPKLPGKSQPLRPIRASPNGVGISSDYINSIIDRIEDLVLVAQNQKPVAGNNITVNFTPQGAVINAVTQ
Ga0181359_106652533300019784Freshwater LakeMPLLPQAVSRPLRKINPTPAGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTAQGAVINAVVE
Ga0181359_107658533300019784Freshwater LakePQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTGEGAVINAVTQ
Ga0181359_121451723300019784Freshwater LakeMPILPQAVSRPLRKINPTPSGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINYTDKGAVINAVVE
Ga0194110_1046247723300020084Freshwater LakeMPENPSPPRLPGQTQPLRPIRPTPEGVGISAEYINSIIERIEDLVLIAQSQKPIAGNNVTVNFTAQGAVINAITE
Ga0194133_1012215333300021091Freshwater LakeMPENPSPPRLPGQTKPLRPIRPTPEGVGISAEYMNSIIERIEDLVLIAQSQKPIAGNNVTVNFTAQGAVINAVTQ
Ga0194133_1021140323300021091Freshwater LakeMAANPSPAILPGSTKPLGVLRPTAQGVGISAEYVNDIIERIEDLVLIAQSQKPIAGNNVTVNYTSQGAVINVD
Ga0194048_1016822223300021519Anoxic Zone FreshwaterMAENPPNAVISSRSQPLRVIRPTPDGVAITTDYLNTIINRIEDLVLIAKSQKPIPGNNVQINFTSQGAVINAVTQ
Ga0222713_1005167433300021962Estuarine WaterMAENPSPPRLPGKSQPLRPIRATPDGVGISVDYMNSIIDRIEDLVLVAQSQKPIAGNNIQINFTAQGAVINAVTQ
Ga0181354_114887623300022190Freshwater LakeMAFLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTAEGAVINAVTE
Ga0181354_119961123300022190Freshwater LakeMAENPSPPKLPGKSQSLRTIRPTPDGVGISADYINSIIERIEDLVLVAQNQKPVAGNNIQINFTTQGAVINAVTQ
Ga0181351_101865433300022407Freshwater LakeMAFLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTGEGAVINAVTQ
Ga0181351_104713133300022407Freshwater LakeMALLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTAEGAVINAVTQ
Ga0181351_121109523300022407Freshwater LakeMPLLPQAVSRPLRKINPTPSGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINYTAQGAVINAVVE
Ga0214917_10004523143300022752FreshwaterMAENPSPPKLPGKSQPLRTIRPTPDGVGISSEYINSIIDRIEDLVLVAQNQKPIAGNNIQINFTAQGAVINAVTQ
Ga0214917_10004968163300022752FreshwaterMAENPSPPKLPGKSQPLRTIRATPSGVGISSDYINSIIDRIEDLVLVAQSQKPVAGNNITVNFTSQGAVINAVTQ
Ga0214917_1002591833300022752FreshwaterMAENPSPPKLTGKSQPLRTIRETPDGVGISSDYINSIIDRIEDLVLVAQNQKPVPGNNIQINFTQQGAVINAVTQ
Ga0214921_10004964163300023174FreshwaterMPLLPQAVSRPLRKINPTPAGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTDKGAVINVVTQ
Ga0214921_1003982013300023174FreshwaterMAENPPNAVISSRSQPLRVIRPTPDGVAITTDYLNTIINRIEDLVLIAKSQKPIPGNNVQINFTSQGTVINAVTQ
Ga0214923_10002730203300023179FreshwaterMAKNPSPPALPGQSQPLRIIRATPDGVGISSDYINTIISRIEDLVLIAQSQKPIAGNNIQINYTAQGAVINAVTQ
Ga0214923_1006851433300023179FreshwaterMPQNPSNQIVSGKSRPLRMLNVTPNGVGISAEYMNTIIERIEDLYLLAESQKPVAGNFIKINYLPTGAVINVVTQ
Ga0209851_101727323300026902SandMPLLPQAVSRPLRKLNPTPAGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTAQGAVINAVTQ
Ga0208788_111197423300027499Deep SubsurfaceMPLLPQTASRPLRFVTPPASGVGITAEYINDIIDRIEHLVQVAQLQKPIAGNNITINYTAQGAVINADE
Ga0208974_1000140403300027608Freshwater LenticMAENPPNAVLSSRSQPLRVIRPTPDGVAITTDYLNTIINRIEDLVLIAKSQKPIPGNNVQINFTSQGAVINAVTQ
Ga0208975_108103523300027659Freshwater LenticMAENPSPSKLPGKSQPLRTIRPTPDGVGISADYINSIIDRIEDLVLVAQSQKPIAGNNIQINFTAQGAVINAVTQ
Ga0209499_118828423300027712Freshwater LakeMAENPSPPKLPGKSQPLRTIRATPNGIGISSDYINSIIDRIEDLVLVAQSQKPVAGNNITVNFTPQGAVINAVTQ
(restricted) Ga0247836_105672423300027728FreshwaterMPLLPQAVSRPLRKINPTPSGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTDKGAVINAITE
(restricted) Ga0247836_118624623300027728FreshwaterMPLLPQAVSRPLRKINPTPSGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINFTDKGAVINAVTQ
(restricted) Ga0247833_111365023300027730FreshwaterMPLLPQSVSRPLRKINPTPSGVGIGAEYINSIIDRIEQLVLVAELQKPIAGNNITVNYTANGVVISLAVFSS
(restricted) Ga0247833_112243833300027730FreshwaterMPLLPQAVSRPLRKINPTPSGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINYTDKGAVINAITE
Ga0209085_1002388133300027741Freshwater LakeMAENPSPPKLPGKSQPLRTIRATPHGVGISSDYINSIIDRIEDLVLVAQNQKPVAGNNITINFTPQGAVINAVTQ
Ga0209296_100898683300027759Freshwater LakeMAKNPLPPPLPGASRPLRIIKPTAGGVGISVEFINSIIARIENLVAIAQSQKPIAGNNIRINFTPEGAVIEAVSSDCT
Ga0209296_107401533300027759Freshwater LakeMAENPSPPKLPGKSQPLRPIRQSPNGVGISSDYINSIIDRIEDLILVAQNQKPVAGNNITVNFTPQGAVINAVTQ
Ga0209088_10000298523300027763Freshwater LakeMSLLPQSVSRPLRKINPTPAGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINYTAQGAVINAVVE
Ga0209088_1008392723300027763Freshwater LakeMAENPPNAVISSRSQPLRAIRPTPDGVAITTDYLNTIINRIEDLVLIAKSQKPIPGNNVQINFTSQGAVINAVTQ
Ga0209086_1000253963300027770Freshwater LakeMPLLPQSVSRPLRKLNPTPAGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQVNYTAQGAVINAVTQ
Ga0209086_1008302733300027770Freshwater LakeMAENPSPQKLPGKSQPLRQIRTSPNGVGISVDYINTIIDRIEDLVLVAQNQKPVPGNNIQINFTAQGAVINAVTQ
Ga0209500_1006751213300027782Freshwater LakeRPIRQSPNGVGISSDYINSIIDRIEDLILVAQNQKPVAGNNITVNFTPQGAVINAVTQ
Ga0209353_1016388923300027798Freshwater LakeMPLLPQAVSRPLRKINPTPSGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINYTDKGAVINAVVE
Ga0209354_1003578113300027808Freshwater LakeMALLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTA
Ga0209354_1030835223300027808Freshwater LakeLRKINPTPAGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTAQGAVINAVVE
Ga0209400_105811833300027963Freshwater LakeMAENPSPPKLPGKSQPLRQIRTSPNGVGISVDYINTIIDRIEDLVLVAQNQKPVPGNNIQINFTAQGAVINAVTQ
Ga0209298_1000311443300027973Freshwater LakeMAENPSPPKQPGKSQPLRTIRTSPNGVGISSDYINSIIDRIEDLVLVAQNQKPVAGNNITVNFTPQGAVINAVTQ
(restricted) Ga0247835_112351013300028114FreshwaterKINPTPSGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINFTDKGAVINAVTQ
(restricted) Ga0247832_103129113300028557FreshwaterKINPTPSGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTDKGAVINAITE
(restricted) Ga0247842_1038631113300029268FreshwaterMPLLPQAVSRPLRKINPTPSGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTD
(restricted) Ga0247841_1033143733300029286FreshwaterPMPPLPQAVSRPLRKINPTPSGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINYTDKGAVINAVVE
Ga0307376_1038714423300031578SoilMPLLPQAVSRPLRKINPTPAGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTDKGAVINAITE
Ga0315291_1010722943300031707SedimentMPLLPQSVSKPLRKLNPTPSGVGIGAEYINDIISRIEQLVQVAQLQKPIAGNNITINYTGEGAVINAVQ
Ga0315291_1140825323300031707SedimentMPLLPQAVSRPLRKINPTPTGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINYTDKGAVINAVVE
Ga0315293_1007398623300031746SedimentMPLLPQAVSRPLRKLNPTPAGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINYTDKGAVINVATQ
Ga0315285_1070226313300031885SedimentMAVLPQTVSRPLRKLNPTPSGVGIGVEYINDIIGRIEQLVQVAQLQKPIAGNNITINYTGEGAVINAVVE
Ga0315294_1025834533300031952SedimentMPILPQAVSRPLRKINPTPSGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINYTAQGAVINAVVE
Ga0315294_1035418113300031952SedimentMPLLPQSVSRPLRKLNPTPSGVGIGAEYINDIISRIEQLVQVAQLQKPIAGNNITI
Ga0315274_1113037823300031999SedimentMPLLPQAVSRPLRKLNPTPAGVGIGAEYINSIIDRIEDLVLTAQSQKPVAGNNIQINFTDKGAVINAVTQ
Ga0315284_1143471423300032053SedimentMPLLPQSVSRPLRKLNPTPSGVGIGAEYINDIISRIEQLVQVAQLQKPIAGNNITINYTGEGAVINAVQ
Ga0315905_1000871123300032092FreshwaterMAENPSPPKLPGKSQPLRTIRPTPDGVGISADYINSIIQRIEDLVQVAQSQKPIAGNNIQINFTAQGAVINATE


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