Basic Information | |
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Family ID | F093735 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 46 residues |
Representative Sequence | PLSHWRTYKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKK |
Number of Associated Samples | 80 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 50.94 % |
% of genes from short scaffolds (< 2000 bps) | 47.17 % |
Associated GOLD sequencing projects | 70 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.40 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (63.208 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (28.302 % of family members) |
Environment Ontology (ENVO) | Unclassified (41.509 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (43.396 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 27.63% β-sheet: 0.00% Coil/Unstructured: 72.37% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.40 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Sediment Freshwater Sediment Freshwater Freshwater Lake Freshwater Freshwater, Plankton Freshwater Lake Freshwater Lake Freshwater Sediment Freshwater Marine Aqueous Freshwater To Marine Saline Gradient Wetland Marine Estuarine Water Soil Fracking Water |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
BS_KBA_SWE12_21mDRAFT_100792631 | 3300000124 | Marine | PLSHWRTYKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ* |
BS_KBA_SWE21_205mDRAFT_100960621 | 3300000241 | Marine | TYKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ* |
JGIcombinedJ13530_1081780406 | 3300001213 | Wetland | IFTQHDAWDLFFNMMEAGYAPFPGTSLPQLKSAIKK* |
Ga0075474_100955243 | 3300006025 | Aqueous | SHWRTYKYKEVFTQHDAWDLFFNMMDVGYVPFPGTALPQLKSAIKKS* |
Ga0075478_101566981 | 3300006026 | Aqueous | KPDEHFTQNHAWDLFFNMMEAGYVPFPGRSLPQLQSVVKKQ* |
Ga0075462_100833654 | 3300006027 | Aqueous | SHWRNYKTDQHFTQNHAWDLFFNMMEAGYVPFPGRSLPQLQSVVKKQ* |
Ga0098073_10453461 | 3300006734 | Marine | LLHTKSGAQAPLSHWRTYKPSEVFTQHHAWDLFFNMMGAGYTPFPGTSLPQLKNAFKK* |
Ga0098073_10468052 | 3300006734 | Marine | VLLYTNNGAQAPLSHWRYYKPKEVFTQHHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKK* |
Ga0098073_10505661 | 3300006734 | Marine | THWRTYKSKEVFTQHDAWDLFFNMMEAGYVPFPGTALPQLHSAVKK* |
Ga0098073_10551972 | 3300006734 | Marine | GAQAPLSHWRTYKPNEVFTQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKK* |
Ga0070749_105052434 | 3300006802 | Aqueous | LLYTNSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ* |
Ga0070749_105586312 | 3300006802 | Aqueous | YGAQAPLTHWRSYMPKEVFTQNHAWDLFFNMMAAGYVPFPGVSLPQLKSAVKK* |
Ga0070754_103499061 | 3300006810 | Aqueous | EVFTQHDAWDLFFNMMDVGYVPFPGTALPQLKSAIKKS* |
Ga0075477_102869463 | 3300006869 | Aqueous | TQNHAWDLFFNMMEAGYVPFPGRSLPQLQSVVKKQ* |
Ga0070750_101187984 | 3300006916 | Aqueous | QYKPKEIFTQDDAWTLFDAMMDAGFVPFPAVALPQLSQAFRKPNHDQKPE* |
Ga0103959_11876021 | 3300007214 | Freshwater Lake | YTNSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ* |
Ga0070752_13999991 | 3300007345 | Aqueous | QHDAWDLFFNMMDVGYVPFPGTALPQLKSAIKKS* |
Ga0070753_13538162 | 3300007346 | Aqueous | PLSHWRYYKPKEVFTQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKK* |
Ga0099851_13494281 | 3300007538 | Aqueous | FTQHHAWDLFFNMMEAGYVPFPGTSLPQLKSAIKK* |
Ga0099849_10585975 | 3300007539 | Aqueous | KPKEVFTQSHAWDLFFNMMEAGYTPFPGTSLPQLKNAFKK* |
Ga0099849_12897501 | 3300007539 | Aqueous | KEVFTQHHAWDLFFNMMEAGYVPFPGISLPQLKAAVKNDR* |
Ga0099848_10679415 | 3300007541 | Aqueous | LYTNNGAQAPLTHWRTYKNNEVFTQHHAWDLFFNMMEAGYVPFPGTSLPQLKSAVKKS* |
Ga0099848_11896301 | 3300007541 | Aqueous | EVFTQHHAWDLFFNMMDASYVPFPGIALPQLKSALKK* |
Ga0099846_10931844 | 3300007542 | Aqueous | VLLHTKYGAQAPLTHWRSYMPKEVFTQNHAWDLFFNMMEAGYVPFPGISLPQLKAAVKNDR* |
Ga0099850_11521394 | 3300007960 | Aqueous | SHWRTYKPQEVFTQNHAWDLFFNMMEAGYVPFPGIALPQLKSAIKK* |
Ga0114343_11329264 | 3300008110 | Freshwater, Plankton | QHDAWDLFFNMMEAGYVPFPGTALPQLKSAVKKQ* |
Ga0114336_12382791 | 3300008261 | Freshwater, Plankton | KEVFTQHDAWDLFFNMMEAGYTPFPGTSLPQLKAAIKKQ* |
Ga0105098_102624641 | 3300009081 | Freshwater Sediment | SGAQAPLSHWRTYKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKK* |
Ga0105099_105040893 | 3300009082 | Freshwater Sediment | GAQAPLSHWRTYKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ* |
Ga0105096_101016405 | 3300009170 | Freshwater Sediment | PLTHWRTYKPKEVFTQEHAWDLFFNMMEAGYVPFPGTALPQLQSAIKKK* |
Ga0129348_10228931 | 3300010296 | Freshwater To Marine Saline Gradient | TQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKK* |
Ga0129348_11630494 | 3300010296 | Freshwater To Marine Saline Gradient | FTQHHAWDLFFNMMEAGYVPFPGISLPQLKSAIKK* |
Ga0129345_10454241 | 3300010297 | Freshwater To Marine Saline Gradient | PLSHWRYYKPKEVFTQHHAWDLFFNMMEAGYVPFPGISLPQLKSAIKK* |
Ga0129351_11671334 | 3300010300 | Freshwater To Marine Saline Gradient | VLLHTKYGAQAPLTHWRSYMPKEVFTQNHAWDLFFNMMAAGYVPFPGVSLPQLKSAVKK* |
Ga0129351_12132921 | 3300010300 | Freshwater To Marine Saline Gradient | NGAQAPLSHWRYYKPKEVFTQHHAWDLFFNMMEAGYVPFPGISLPQLKSAIKK* |
Ga0129333_106935293 | 3300010354 | Freshwater To Marine Saline Gradient | LLHTKSGAQAPLSHWRTYKPQEVLTQNDAWDLFFNMMEAGYIPFPGTSLPQLKEAVKKS* |
Ga0129333_109047903 | 3300010354 | Freshwater To Marine Saline Gradient | YTNSGAQAPLSHWRTYKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ* |
Ga0129333_110853161 | 3300010354 | Freshwater To Marine Saline Gradient | REVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ* |
Ga0129336_103228661 | 3300010370 | Freshwater To Marine Saline Gradient | YKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAVKRQ* |
Ga0129336_105473051 | 3300010370 | Freshwater To Marine Saline Gradient | THWRTYKPKETFNQRDAWDLFFNMLEAGYVPFPGIALPQLQAAVKKS* |
Ga0129336_105716044 | 3300010370 | Freshwater To Marine Saline Gradient | TQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ* |
Ga0157600_12160211 | 3300012719 | Freshwater | HTKSGAQAPLSHWRTYKPQEVLTQNDAWDLFFNMMEAGYIPFPGTSLPQLKEAVKKS* |
Ga0129340_10541323 | 3300012963 | Aqueous | GSMAPISHWRTYKPKEVFTQEHAWDLFFNMLEAGYVPFPLTSLPQLSTVLKKK* |
Ga0177922_101320291 | 3300013372 | Freshwater | LTHWRSYKPRTVFTQHNAWDLFDSMMDAGYVPFPGTALPQLASAIKKK* |
Ga0177922_111137681 | 3300013372 | Freshwater | TQHNAWDLFDSMMDAGYVPFPGTALPQLASAIKKK* |
Ga0181352_10437161 | 3300017747 | Freshwater Lake | HWRTYKPKEIFTQHDAWDLFFNMMDASYVPFPGTALPQLKSALKKQ |
Ga0181352_10689285 | 3300017747 | Freshwater Lake | SHWRTYKPNEILTQHDAWDLFFNMMEAGYNPFPGTSLPQLKEAVKKS |
Ga0181352_10696135 | 3300017747 | Freshwater Lake | SHWRTYKPNEILTQHDAWDLFFNMMEAGYNPFPGTSLPQLKEAIKKS |
Ga0181352_11351653 | 3300017747 | Freshwater Lake | YTNSGAQAPLSHWRTYKPKEIFTQQDAWDLFFNMMEAGYTPFPGTSLPQLKAALKK |
Ga0181343_100219518 | 3300017766 | Freshwater Lake | TQHDAWDLFFNMMEAGYNPFPGTSLPQLKEAIKKS |
Ga0181343_10058631 | 3300017766 | Freshwater Lake | PKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKK |
Ga0181343_11304551 | 3300017766 | Freshwater Lake | PLSHWRTYKPKEIFTQHDAWDLFFNMMDASYVPFPGTALPQLKSAIKKQ |
Ga0181358_11402293 | 3300017774 | Freshwater Lake | FVLLYTKHGAQAPLKQWRTYKPKEIFTQHDAWSLFDSMMEAGYLPFPGVALPQLQTQGKT |
Ga0181358_12068043 | 3300017774 | Freshwater Lake | HTQSGSMAPLTHWRSYKPRTVFTQHNAWDLFDSMMDAGYVPFPGTALPQLASAIKKK |
Ga0181357_12003531 | 3300017777 | Freshwater Lake | THWRSYKPRTVFTQHNAWDLFDSMMDAGYVPFPGTALPQLASAIKKK |
Ga0181346_11662381 | 3300017780 | Freshwater Lake | NKPKEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ |
Ga0181346_12292571 | 3300017780 | Freshwater Lake | GSMAPLTHWRSYKPRTVFTQHNAWDLFDSMMDAGYVPFPGTALPQLASAIKKK |
Ga0181346_12978793 | 3300017780 | Freshwater Lake | EVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ |
Ga0181348_10293551 | 3300017784 | Freshwater Lake | EIFTRDDAWTLFDNMMNAGYVPYPGVALPQLKQALQKI |
Ga0181348_12432201 | 3300017784 | Freshwater Lake | YKPKEIFTQHDAWSLFDSMMEAGYLPFPGVALPQLQTQGKTL |
Ga0181355_10640466 | 3300017785 | Freshwater Lake | VFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ |
Ga0181355_12705833 | 3300017785 | Freshwater Lake | MAPLTHWRSYKPRTVFTQHNAWDLFDSMMDAGYVPFPGTALPQLASAIKKK |
Ga0194003_10005911 | 3300019724 | Sediment | RSDQIFTQNHAWDLFFNMMEAGYVPFPGRSLPQLQSVVKKQ |
Ga0181359_11862323 | 3300019784 | Freshwater Lake | KPNEVFTQHHAWDLFFNMMEAGYVPFPGTSLPQLKTALKK |
Ga0181359_12135123 | 3300019784 | Freshwater Lake | FTQHNAWDLFDSMMDAGYVPFPGTALPQLASAIKKK |
Ga0194115_100293901 | 3300020183 | Freshwater Lake | PQEVFTQHHAWDLFFNMMEAGYTPFPGTSLPQLKAAVKKQ |
Ga0194115_103273734 | 3300020183 | Freshwater Lake | LHTKSGAQAPLSHWRTYKPQEVFTQHHAWDLFFNMMEAGYTPFPGTSLPQLKTAVKKQ |
Ga0194118_105943901 | 3300020190 | Freshwater Lake | TYKPKETFNQRDAWDLFFNMLEAGYVPFPGIALPQLQAAVKKS |
Ga0194125_108537783 | 3300020222 | Freshwater Lake | FNQRDAWDLFFNMLEAGYVPFPGIALPQLQAAVKKS |
Ga0208222_10330884 | 3300020566 | Freshwater | GAQAPLSHWRTYKPKDIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ |
Ga0222712_104016521 | 3300021963 | Estuarine Water | MAPLTHWRSYKPRTVFTQHDAWDLFDSMMDAGYVPFPGTALPQLASAIKKK |
Ga0222719_102603551 | 3300021964 | Estuarine Water | SHWRTYKAKEVFTQYHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKKA |
Ga0212028_10399134 | 3300022071 | Aqueous | SHWRNYKPDEHFTQNHAWDLFFNMMEAGYVPFPGRSLPQLQSVVKKQ |
Ga0212031_10215021 | 3300022176 | Aqueous | KPSEVFTQHHAWDLFFNMMEAGYTPFPGTSLPQLKNAFKK |
Ga0196899_11384553 | 3300022187 | Aqueous | TQYHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKKA |
Ga0196905_10728921 | 3300022198 | Aqueous | YGAQAPLTHWRSYMPKEVFTQNHAWDLFFNMMAAGYVPFPGTSLPQLKNAFKK |
Ga0196901_11718701 | 3300022200 | Aqueous | PKEVFTQHHAWDLFFNMMDVGYVPFPGVSLPQLKSAIKK |
Ga0208161_10782024 | 3300025646 | Aqueous | NNGAQAPLSHWRYYKPKEVFTQHHAWDLFFNMMEAGYVPFPGISLPQLKSAIKK |
Ga0208428_11424081 | 3300025653 | Aqueous | HWRNYKPDEHFTQNHAWDLFFNMMEAGYVPFPGRSLPQLQSVVKKQ |
Ga0208162_11217703 | 3300025674 | Aqueous | KYGAQAPLTHWRSYMPKEVFTQNHAWDLFFNMMAAGYVPFPGISLPQLKSAIKK |
Ga0208162_11567963 | 3300025674 | Aqueous | QAPLTHWRSYMPKEVFTQNHAWDLFFNMMAAGYVPFPGVSLPQLKSAVKK |
Ga0208019_11820291 | 3300025687 | Aqueous | EVFTQHHAWDLFFNMMEAGYVPFPGISLPQLKSAIKK |
Ga0208644_11327125 | 3300025889 | Aqueous | KEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ |
Ga0209704_10858374 | 3300027693 | Freshwater Sediment | TNSGAQAPLSHWRTYKPKDIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ |
Ga0209033_11048424 | 3300027697 | Freshwater Lake | PKDVFTQHDAWDLFFNMCDVGYVPFPGTALPQLKSAVKK |
Ga0209492_11678461 | 3300027721 | Freshwater Sediment | PLSHWRTYKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKK |
Ga0209442_13114811 | 3300027732 | Freshwater Lake | TKHGAQAPLKQWRTYKPKEIFTQHDAWSLFDSMMEAGYLPFPGVALPQLQTQGKTL |
Ga0209288_100204077 | 3300027762 | Freshwater Sediment | FTQNHAWDLFFNMMEAGYVPFPGVALPQLKAAIKK |
Ga0209990_101023255 | 3300027816 | Freshwater Lake | LSHWRTYKPNEILTQYDAWDLFFNMMEAGYNPFPGTSLPQLKEAIKKS |
Ga0209298_102430474 | 3300027973 | Freshwater Lake | LLHTQSGSMAPLTHWRSYKPRTVFTQHDAWTLFDSMMDAGYVPFPGTALPQLASAIKKK |
Ga0307378_102121361 | 3300031566 | Soil | FTQHDAWDLFSNMMDAGYAPFPGTSLPQLASAVKKNGN |
Ga0307375_106727603 | 3300031669 | Soil | AQAPLKQWRTYKPKETFTQHDAWSLFDSMMEAGYLPFPGVALPQLQTQGKAL |
Ga0307377_105550101 | 3300031673 | Soil | ILLHTICGSMAPISHWRTYKPNEVFTQEHAWDLFFNMLEAGYVPFPLTSLPQLSTVLKKK |
Ga0315291_109320251 | 3300031707 | Sediment | AQAPLSHWRTYKPKEIYTQHNAWDLFSSMLDAGYVPFPGTALPQLASAVKKQ |
Ga0315907_1005412611 | 3300031758 | Freshwater | LSHWRTYKPNEILTQHDAWDLFFNMMEAGYNPFPGTSLPQLKEAIKKS |
Ga0315288_102674286 | 3300031772 | Sediment | SGSMAPLTHWRSYKPRTVFTQHDAWDLFDSMMDAGYVPFPGTALPQLASAIKKK |
Ga0315899_110352221 | 3300031784 | Freshwater | NQSHAWDLFFNMMEAGYVPFPGTALPQLQSAIKKK |
Ga0315290_100995246 | 3300031834 | Sediment | RFVLLHTQSGSMAPLTHWRSYKPRTVFTQHNAWDLFDSMMDAGYVPFPGTALPQLASAIKKK |
Ga0315909_107939633 | 3300031857 | Freshwater | GAQAPLTHWRTYKPKQTFNQQDAWDLFFSMLEAGYVPFPGIALPQLQAAVKKS |
Ga0315902_100074031 | 3300032093 | Freshwater | FNQSHAWDLFFNMMEAGYVPFPGTALPQLQSAIKKK |
Ga0310130_0279880_1_114 | 3300034073 | Fracking Water | FTEDDAWSLFDNMMEAGYVPFPGTSLPQLKNMTQDNG |
Ga0335029_0320020_836_970 | 3300034102 | Freshwater | RTYKPKEVFNQTHAWDLFFNMMEAGYVPFPGTALPQLQSAIKKK |
Ga0335030_0406702_762_881 | 3300034103 | Freshwater | NEVFNQSHAWDLFFNMMEAGYVPFPGIALPQLQSAIKKK |
Ga0334997_0933594_2_166 | 3300034280 | Freshwater | SGAQSPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ |
Ga0335007_0579413_491_652 | 3300034283 | Freshwater | SGAQAPLTHWRAYKPREIFNQRDAWDLFFNMMEAGYVPFPGTSLPQLKSALKK |
Ga0348336_134466_2_139 | 3300034375 | Aqueous | WRTYKAKEVFTQYHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKKS |
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