Basic Information | |
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Family ID | F093675 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 40 residues |
Representative Sequence | MAPFIAIVLSIGILTLLGIAAGFGIDSRPSYGDDHAR |
Number of Associated Samples | 95 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 31.82 % |
% of genes near scaffold ends (potentially truncated) | 14.15 % |
% of genes from short scaffolds (< 2000 bps) | 16.98 % |
Associated GOLD sequencing projects | 92 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (79.245 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.698 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.302 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (37.736 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 41.54% β-sheet: 0.00% Coil/Unstructured: 58.46% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Polar Desert Sand Estuarine Natural And Restored Wetlands Soil Sediment (Intertidal) Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Glacier Forefield Soil Grasslands Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Agricultural Soil Permafrost Soil Grasslands Soil Hardwood Forest Soil Soil Untreated Peat Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Soil Avena Fatua Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Rhizosphere Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10214J12806_106324062 | 3300000891 | Soil | MAPIITIILMIGLMTALGIAAVLWGVDSRPSYGDDHAR* |
JGI10216J12902_1000338102 | 3300000956 | Soil | MAPIITIVLMVGLLTALGIAAVLWGVDTRPSYGDDHAR* |
JGI10216J12902_1065631942 | 3300000956 | Soil | MAPMIAMVLSMGIATALGIFAIQFGADSRPTYGDDHAR* |
JGI10216J12902_1107135371 | 3300000956 | Soil | RRCRMAPFIAIVLSIGILTLLGIAAGFGFDSRPSYGDDHAR* |
A305W6_10045255 | 3300001330 | Permafrost | MAPFIAIVLSIGIMAAFGIAGAIWGTDSRPSYGDDHAR* |
Ga0055486_100851361 | 3300004071 | Natural And Restored Wetlands | RGYGRRCRMAPYIAIVLSIGLLALIGFAAIGWGIDSRPSYSDDHIR* |
Ga0062593_1028521202 | 3300004114 | Soil | RGYGRDRRCRMAPFIAMLVSIGITTLFGIAALAFGADSRPSYRDDHAR* |
Ga0063455_1004860521 | 3300004153 | Soil | KGLLRDRRCRMAPFIAMLLSIGITTVFGIAALAFGTDSRPTYLDDHAR* |
Ga0062589_1017437992 | 3300004156 | Soil | RGYGRERRCRMAPFIAMIMSIGIGTVLGIFALTFGTDSRPTYGDDHAR* |
Ga0070683_1001055493 | 3300005329 | Corn Rhizosphere | MTLEGVTRRRCLMAPFIIMIVLSIGLMALFGIAGGSGIDSRPSYGDDHAR* |
Ga0070691_101255761 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | RKKTQKGLRERKRRCLMAPLIAMIASIGIASVFGMIAFTFGSDSRPTYGDDHAR* |
Ga0070694_1018498801 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | EQPRRGYGTDRRRRMAPFIVMIVSIGITTVFGIAALAFGVDSRPTYGDDHAR* |
Ga0070708_1020883131 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | RRCRMAPFIAIILSIGIATLIGIAAAGFGADTRPTYRDDHAR* |
Ga0070697_1007325233 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | RRCRMAPLIAIILTIGLLIVLGIAAQDWGTDSRPSYGDDHAR* |
Ga0066695_101010033 | 3300005553 | Soil | MAPLIAIILTIGILILLGIAAQDWGADSRPTYGDDHAR* |
Ga0066698_103603682 | 3300005558 | Soil | MAPFIGIILWIGITIVLGIAAVTFGTDSTPTYGDDHAR* |
Ga0068866_109255421 | 3300005718 | Miscanthus Rhizosphere | MAPFIAIILSIGIATLIGIAAAGFGADTRPTYRDDHAR* |
Ga0068861_1005105593 | 3300005719 | Switchgrass Rhizosphere | MAPFIAIVLSIGILTLLGIAAGFGIDSRPSYGDDHAR* |
Ga0074473_110136002 | 3300005830 | Sediment (Intertidal) | MAPFIAIILTIGLMTLLGVAASVGADSRPSYGDDHTR* |
Ga0068858_1022031142 | 3300005842 | Switchgrass Rhizosphere | MAPFIMIVLSIGLLALFGLAAGTGIDSRPSYGDDHAR* |
Ga0068860_1013691041 | 3300005843 | Switchgrass Rhizosphere | MAPFIMIVLSIGLLALFGLAAGSGIDSRPSYGDDHAR* |
Ga0079222_109508171 | 3300006755 | Agricultural Soil | MAPFIMIVLSIGLMGLLGIASVGWGIDSRPSYGDDHAR* |
Ga0075428_1008954481 | 3300006844 | Populus Rhizosphere | MAPIITIVLMVGLLTALGIAAVLWGVDSRPSYGDDHAR* |
Ga0079217_104422952 | 3300006876 | Agricultural Soil | MVPFIAIVLSIGILTALGIAAVLWGADSRPTYGDDHAR* |
Ga0075426_106837313 | 3300006903 | Populus Rhizosphere | PFIAIVLSIGIMTAFGIAAAIWGTDSRPTYRDDHAR* |
Ga0079219_117188572 | 3300006954 | Agricultural Soil | MAPFIMIVLSIGLMALLGFASAGWGTDSRPSYGDDHAR* |
Ga0111538_109288063 | 3300009156 | Populus Rhizosphere | REEPKRGYSRDRRCRMAPFIALLLSIGITTVIGMAALTFGADSRPSYSDDHAR* |
Ga0126313_117580592 | 3300009840 | Serpentine Soil | MAPFIIMIVLSVGLMALLGIAGGVGIDSRPSYGDDHAR* |
Ga0126312_113298171 | 3300010041 | Serpentine Soil | MVAIVSIVLMVGIMSALGIAAGLWGVDSRPSYGDDHAR* |
Ga0126311_109839232 | 3300010045 | Serpentine Soil | MIAMILSIGLTTILGFAALTWGVDSRPSIGDDHAR* |
Ga0127483_12154631 | 3300010142 | Grasslands Soil | RERRCRMAPLIAIILTIGILILLGIAAQDWGADSRPTYGDDHAR* |
Ga0126377_100310343 | 3300010362 | Tropical Forest Soil | MAPYIAILMSIGITTLIGIAALAFGTDSRPTYGDDHAR* |
Ga0134125_109019371 | 3300010371 | Terrestrial Soil | MAPFIAIILSIGLTTLIGIAAAGFGADTRPTYRDDHAR* |
Ga0134124_101488054 | 3300010397 | Terrestrial Soil | MAPFIAIVLLIGIMSALGIAAAMWGTDSRPTYVDDHAR* |
Ga0134127_101665094 | 3300010399 | Terrestrial Soil | MAPFIAIILSIGFATLIGIAAAGFGADTRPTYRDDHAR* |
Ga0134127_101690904 | 3300010399 | Terrestrial Soil | TKKRLREKERRCRMASLIFIALMIGIMTSLGIAAVLYGNDSRPSYGDDHAR* |
Ga0134127_125394632 | 3300010399 | Terrestrial Soil | MAPIITIVLMVGIMTALGVAATYWGVDSRPSYRDDHAR* |
Ga0134122_124740631 | 3300010400 | Terrestrial Soil | MAPFIAIVLSIGILTLLGMLAGFGTDSRPSYGDDHAR* |
Ga0137437_12140932 | 3300011442 | Soil | MALFIAIVLLIGIMAAFGIAAAVWGTDSRPSYGDDHAR* |
Ga0136621_12352102 | 3300012092 | Polar Desert Sand | MAPFIAIILSMGIMTALGIAAALWGTASRPSYGDDHAR* |
Ga0137376_100914514 | 3300012208 | Vadose Zone Soil | MAPLIAIILTIGILILLGIAAQDWGADSRPTYRDDHAR* |
Ga0150985_1107587271 | 3300012212 | Avena Fatua Rhizosphere | TQKGLLRDRRCRMAPFIAMLLSIGITTVFGIAALAFGTDSRPTYLDDHAR* |
Ga0134061_12139961 | 3300012399 | Grasslands Soil | PRRGYGKERRCRMAPLIAIIFTIGILILLGIAAQDWGADSRPTYGDDHAR* |
Ga0136633_12958571 | 3300012527 | Polar Desert Sand | MAPFIAIVLSIGIMTALGIAAFLWGFDSRPTYGDDHTR* |
Ga0137396_112577541 | 3300012918 | Vadose Zone Soil | MAPLIAIIMTIGILVLLGIAAQNWGEDSRPTYGDDHAR* |
Ga0137410_120317041 | 3300012944 | Vadose Zone Soil | ERRCRMAPLIAIIMTIGILILLGIAAQDWGEDSRPTYGDDHAR* |
Ga0164304_113236892 | 3300012986 | Soil | MAPFIAIVLSIGIMTAFGIAAAIWGTDSRPTYGDDHAR* |
Ga0163163_128917612 | 3300014325 | Switchgrass Rhizosphere | MAPFMMIVLSIGLLALFGLAAGSGIDSRPSYGDDHAR* |
Ga0182000_105629491 | 3300014487 | Soil | MAPIITIVLMVGIMTALGVAAALWGVDSRPSYGDDHAR* |
Ga0182008_102366982 | 3300014497 | Rhizosphere | MAPFIIMIVLSIGLMALFGIAGGSGIDSRPSYGDDHAR* |
Ga0182008_107341351 | 3300014497 | Rhizosphere | MAPFIAIVLSIGIMSAVGIAAALWGTDSRPSYGDDHAR* |
Ga0167655_10064396 | 3300015086 | Glacier Forefield Soil | MAPFIAIVLSIGIMTLLGIAAGIGVDSRPSYGDDHAR* |
Ga0167653_10374392 | 3300015162 | Glacier Forefield Soil | MAPFIAIVLLIGIMCALGIAAAMWGTDSRPTYADDHAR* |
Ga0167646_10173663 | 3300015192 | Glacier Forefield Soil | MAPFIAIVLSIGILSLLGIFAGFGIDSRPSYGDDHAR* |
Ga0137418_107167252 | 3300015241 | Vadose Zone Soil | MAPLIAIIMTIGILILLGIAAQDWGEDSRPTYGDDHAR* |
Ga0180075_11042561 | 3300015252 | Soil | MAPFIAIVLLIGIMAAFGIAAAVWGTDSRPSYGDDHAR* |
Ga0183260_101197962 | 3300017787 | Polar Desert Sand | MAPFIAIFLSMGIMTALGIAAALWGTDSRPSYGDDHAR |
Ga0184621_101105541 | 3300018054 | Groundwater Sediment | MAPFIAVILTIGLLIVLGIAAQDWGTDSRPTYGDDHAR |
Ga0184632_101012332 | 3300018075 | Groundwater Sediment | MAPLIAIVLTIGIMTAIGIAALTWGVDTTPSYGDDHAR |
Ga0190265_112640092 | 3300018422 | Soil | MAPFIAIVLSMGILTALGIAAVLWGADSRPTYRDDHAR |
Ga0190272_104155812 | 3300018429 | Soil | MAPFIAIVLSMGILTALGIAAVLWGADSRPTYGDDHAR |
Ga0190272_132468142 | 3300018429 | Soil | MAPFIAIILSMGILTALGIAAVLWGADSRPTYGDDHAR |
Ga0066655_105326201 | 3300018431 | Grasslands Soil | LIAIILTIGILILLGIAAQDWGADSRPTYGDDHAR |
Ga0190275_102157334 | 3300018432 | Soil | MAPMITIVLMVGLLTALGIAAVLWGVDTRPSYGDDHAR |
Ga0066667_109573442 | 3300018433 | Grasslands Soil | MAPLIAIILTIGILILLGIAAQDWGADSRPTYGDDHAR |
Ga0190268_110030381 | 3300018466 | Soil | MAPIITIVLIVGLMTALGIAAVLWGVDSRPSYGDDHAR |
Ga0190268_116605501 | 3300018466 | Soil | MAPIITIVLMVGLLTALGIAAVLWGVDTRPSYGDDHAR |
Ga0190270_111493532 | 3300018469 | Soil | MAPIITIFLIVGLMTALGIAAVLWGVDTRPSYGDDHAR |
Ga0190274_127724351 | 3300018476 | Soil | MAPIITIVLMVGLMTALGIAAVLWGVDSRPSYGDDHAR |
Ga0184644_15386951 | 3300019269 | Groundwater Sediment | MAPFIAIVLSIGILTLLGMAAGFGIDSRPSYGDDHAR |
Ga0190264_109249803 | 3300019377 | Soil | MAPIITIFLIVGLMAALGIAAVLWGVDTRPSYGDDHAR |
Ga0190264_120879902 | 3300019377 | Soil | MAPIITIGLILGLMTALGIAAVLWGVDSRPSYGDDHAR |
Ga0190267_100213363 | 3300019767 | Soil | MAPIITIVLMVGLMTALGIAAVLWGVDTRPSYGDDHAR |
Ga0206350_103413691 | 3300020080 | Corn, Switchgrass And Miscanthus Rhizosphere | EPKRGYSRDRRCRMAPFIALLLSIGITTVIGMAALTFGADSRPSYSDDHAR |
Ga0179584_14643653 | 3300021151 | Vadose Zone Soil | PRHGLRSEKRRCRMAPFIAFVLSIGILTAFGIAAAIWGTDSRSTYRDDHAR |
Ga0193699_104948101 | 3300021363 | Soil | MAPFIAIVLSIGLLTLLGMLAGFGIDSRPSYGDDHAR |
Ga0210334_101515933 | 3300021859 | Estuarine | MAPFIAIILTIGLMTLLGVAASVGADSRPSYGDDHTR |
Ga0222624_15555711 | 3300021951 | Groundwater Sediment | MAPFIAIVLSIGILTLLGMLAGFGTDSRPSYGDDHAR |
Ga0222625_12420043 | 3300022195 | Groundwater Sediment | MAPIITIVLTIGIMTALGTIAALWGVDSRPSYGDDHAR |
Ga0222625_14839552 | 3300022195 | Groundwater Sediment | MAPIITIFLIVGLMTALGIAAVLWGVDSRPSYGDDHAR |
Ga0222625_17231341 | 3300022195 | Groundwater Sediment | MAPFIAIILTLGILIVLGIAAQDWGADSRPTYGDDHARSSETTST |
Ga0222625_17772061 | 3300022195 | Groundwater Sediment | SPRRGYGRERRCRMAPFILMIVPIGILVILGIAALTFGTDSRPTIGDDHAR |
Ga0222622_113903042 | 3300022756 | Groundwater Sediment | RRCRMAPFIAVILTIGLLIVLGIAAQDWGTDSRPTYGDDHAR |
Ga0193714_10285362 | 3300023058 | Soil | MAPFIAIVLSIGILTAFGIVAAIWGTDSRPTYRDDHAR |
Ga0209640_112187971 | 3300025324 | Soil | MAPLITIVLSIGILALFGFAALRWGVDSRPTYRDDHAR |
Ga0207660_10000002790 | 3300025917 | Corn Rhizosphere | MAPFIAIILSIGFATLIGIAAAGFGADTRPTYRDDHAR |
Ga0207662_112265221 | 3300025918 | Switchgrass Rhizosphere | GGYARRCRMAPFIMIVLSIGLLALFGLAAGSGIDSRPSYGDDHAR |
Ga0210067_10142672 | 3300025947 | Natural And Restored Wetlands | MAPYIAIVLSIGLLALIGFAAIGWGIDSRPSYSDDHIR |
Ga0207625_1010743 | 3300027457 | Soil | MAPFIAIVLSIGIMIAFGIAAAIWGSDSRPTYGDDHAR |
Ga0209818_11963892 | 3300027637 | Agricultural Soil | MVPFIAIVLSIGILTALGIAAVLWGADSRPTYGDDHAR |
Ga0268264_121047261 | 3300028381 | Switchgrass Rhizosphere | GLRERKRRCRMAPLIAMIASIGIASVFGMIAYTFGTDSRPTYGDDHAR |
Ga0247818_106711962 | 3300028589 | Soil | MAPIITIILMIGLMTALGIAAVLWGVDSRPSYGDDHAR |
Ga0307322_101659162 | 3300028710 | Soil | MAPFIAIVLSIGILTLFGIAAGFGIDSRPSYGDDHAR |
Ga0307280_100971072 | 3300028768 | Soil | MAPFIAIVLSIGIMVAFGIAGAIWGTDSRPSYGDDHAR |
Ga0307282_101798702 | 3300028784 | Soil | MAPFIAIILTIGVLIVLGIAAQDWGADSRPSYGDDHTR |
Ga0307296_100318404 | 3300028819 | Soil | MAPFIAVILTIGLLIVLGIVAQDWGTDSRPTYGDDHAR |
Ga0307277_100746531 | 3300028881 | Soil | MAPFIAIILTIGILIVLGIAAQDWGTDSRPSYGDD |
Ga0307308_102496303 | 3300028884 | Soil | RRGYGRDRRCRMAPFIAIILTIGILIVLGIAAQDWGADSRPTYGDDHARSSETTST |
Ga0308203_10139721 | 3300030829 | Soil | RGYGKDRRCRMAPFIAMIASIGIGTVFGILAFTFGTDSRPTYGDDHAR |
Ga0307408_1008522172 | 3300031548 | Rhizosphere | MAPFIMIVLSIGLLALIGTAGLGWGSDSRPSYGDDHAR |
Ga0310813_123263081 | 3300031716 | Soil | MTLKGVTQRRCRMAPFIIMIVLSIGLMALLGIAGGMGIDSRPSYGDDHAR |
Ga0307468_1020680992 | 3300031740 | Hardwood Forest Soil | MAPFIAIVLSIGILTLLGIAAGIGIDSRPSYGDDHAR |
Ga0326597_116612982 | 3300031965 | Soil | MAPIIAIVLSIGILTAFGIAAVLWGVDSRPTIGDDHARWAGPSPR |
Ga0307416_1012274531 | 3300032002 | Rhizosphere | MAPIITIVLMVGLLTALGMAALLWGVDTRPSYGDDHAR |
Ga0307411_105348632 | 3300032005 | Rhizosphere | MAPMIAMVLSMGIATALGIFAIQFGVDSRPTYGDDHTR |
Ga0316598_204772_402_515 | 3300034652 | Untreated Peat Soil | MAPFIAIVLSIGILTLLGIAAGIGFDSRPTYVDDHAR |
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