Metagenome / Metatranscriptome Family F093555

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F093555
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	55 residues
Representative Sequence	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGTLSAE
Number of Associated Samples	89
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	99.06 %
% of genes from short scaffolds (< 2000 bps)	81.13 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (83.962 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.132 % of family members)
Environment Ontology (ENVO)	Unclassified (51.887 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF05088	Bac_GDH	18.87
PF01425	Amidase	7.55
PF03401	TctC	4.72
PF07883	Cupin_2	3.77
PF13191	AAA_16	2.83
PF00126	HTH_1	2.83
PF10417	1-cysPrx_C	2.83
PF00578	AhpC-TSA	1.89
PF00753	Lactamase_B	1.89
PF13531	SBP_bac_11	1.89
PF04392	ABC_sub_bind	0.94
PF04828	GFA	0.94
PF00067	p450	0.94
PF03176	MMPL	0.94
PF05598	DUF772	0.94
PF13365	Trypsin_2	0.94
PF03734	YkuD	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2902	NAD-specific glutamate dehydrogenase	Amino acid transport and metabolism [E]	18.87
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	7.55
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.72
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.94
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.94
COG2124	Cytochrome P450	Defense mechanisms [V]	0.94
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.94
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.94
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.94
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.96 %
Unclassified	root	N/A	16.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.96 %
Unclassified	root	N/A	16.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.96 %
Unclassified	root	N/A	16.04 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	64.15 %
Unclassified	root	N/A	16.04 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.72 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	1.89 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	1.89 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	60.38 %
Unclassified	root	N/A	16.04 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.72 %
bacterium ADurb.BinA028	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA028	1.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	25.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.92 %
Unclassified	root	N/A	16.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.72 %
bacterium ADurb.BinA028	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA028	1.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.47 %
Unclassified	root	N/A	16.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.72 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.89 %
bacterium ADurb.BinA028	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA028	1.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.47 %
Unclassified	root	N/A	16.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.72 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	3.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.89 %
bacterium ADurb.BinA028	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA028	1.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.47 %
Unclassified	root	N/A	16.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.72 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	3.77 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	1.89 %
bacterium ADurb.BinA028	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA028	1.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.47 %
Unclassified	root	N/A	16.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.72 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3.77 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	1.89 %
bacterium ADurb.BinA028	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA028	1.89 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1.89 %
Mycolicibacterium septicum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium septicum	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_140182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
3300000550\|F24TB_10832543	Not Available	533	Open in IMG/M
3300004281\|Ga0066397_10133410	Not Available	553	Open in IMG/M
3300004629\|Ga0008092_10006140	Not Available	594	Open in IMG/M
3300004633\|Ga0066395_10330615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	842	Open in IMG/M
3300005332\|Ga0066388_106262693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	600	Open in IMG/M
3300005363\|Ga0008090_10229126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300005366\|Ga0070659_100034523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3934	Open in IMG/M
3300005764\|Ga0066903_100471149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium septicum	2111	Open in IMG/M
3300005764\|Ga0066903_105092018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	696	Open in IMG/M
3300005764\|Ga0066903_105360940	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	677	Open in IMG/M
3300005834\|Ga0068851_10125233	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA028	1385	Open in IMG/M
3300005937\|Ga0081455_10088442	All Organisms → cellular organisms → Bacteria	2517	Open in IMG/M
3300006038\|Ga0075365_10268427	Not Available	1200	Open in IMG/M
3300006049\|Ga0075417_10165876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1034	Open in IMG/M
3300006797\|Ga0066659_11031760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300006853\|Ga0075420_101650147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300009100\|Ga0075418_12964207	Not Available	518	Open in IMG/M
3300009147\|Ga0114129_11359882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	878	Open in IMG/M
3300010362\|Ga0126377_10067607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3169	Open in IMG/M
3300010366\|Ga0126379_10520628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1264	Open in IMG/M
3300010371\|Ga0134125_10222205	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.BinA028	2100	Open in IMG/M
3300010398\|Ga0126383_13350826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300012096\|Ga0137389_11119659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	674	Open in IMG/M
3300012911\|Ga0157301_10349745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300012922\|Ga0137394_10911286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300012955\|Ga0164298_10200325	Not Available	1167	Open in IMG/M
3300012971\|Ga0126369_12799269	Not Available	571	Open in IMG/M
3300013296\|Ga0157374_10048404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3944	Open in IMG/M
3300014969\|Ga0157376_10895456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300016294\|Ga0182041_11229010	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300016294\|Ga0182041_11715073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581	Open in IMG/M
3300016294\|Ga0182041_12193198	Not Available	516	Open in IMG/M
3300016341\|Ga0182035_10077661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2360	Open in IMG/M
3300016341\|Ga0182035_11247631	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300016341\|Ga0182035_11607973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586	Open in IMG/M
3300016357\|Ga0182032_11346900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300016371\|Ga0182034_10541766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	976	Open in IMG/M
3300016371\|Ga0182034_11512339	Not Available	588	Open in IMG/M
3300016387\|Ga0182040_10638486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	865	Open in IMG/M
3300016387\|Ga0182040_11431578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586	Open in IMG/M
3300016404\|Ga0182037_10633289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	910	Open in IMG/M
3300016422\|Ga0182039_11864260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	552	Open in IMG/M
3300018027\|Ga0184605_10433865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300018468\|Ga0066662_12470553	Not Available	547	Open in IMG/M
3300018469\|Ga0190270_10167046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1813	Open in IMG/M
3300018476\|Ga0190274_12290267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300021339\|Ga0193706_1155724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	622	Open in IMG/M
3300021363\|Ga0193699_10182711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	868	Open in IMG/M
3300021478\|Ga0210402_10967470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300021560\|Ga0126371_10441487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1446	Open in IMG/M
3300023168\|Ga0247748_1065363	Not Available	567	Open in IMG/M
3300025919\|Ga0207657_10050691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3611	Open in IMG/M
3300025940\|Ga0207691_11606503	Not Available	529	Open in IMG/M
3300028713\|Ga0307303_10023290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1199	Open in IMG/M
3300028716\|Ga0307311_10275805	Not Available	503	Open in IMG/M
3300028778\|Ga0307288_10104611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1034	Open in IMG/M
3300028807\|Ga0307305_10216056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	879	Open in IMG/M
3300028819\|Ga0307296_10317200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	850	Open in IMG/M
3300028824\|Ga0307310_10085054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1382	Open in IMG/M
3300028875\|Ga0307289_10272350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	696	Open in IMG/M
3300031544\|Ga0318534_10073133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1942	Open in IMG/M
3300031545\|Ga0318541_10494507	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300031545\|Ga0318541_10583657	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	625	Open in IMG/M
3300031546\|Ga0318538_10043645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2162	Open in IMG/M
3300031561\|Ga0318528_10093605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1570	Open in IMG/M
3300031562\|Ga0310886_10732340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618	Open in IMG/M
3300031573\|Ga0310915_10701695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	714	Open in IMG/M
3300031668\|Ga0318542_10189490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1035	Open in IMG/M
3300031719\|Ga0306917_10437864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1023	Open in IMG/M
3300031724\|Ga0318500_10147640	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300031744\|Ga0306918_10716802	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300031748\|Ga0318492_10035318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2267	Open in IMG/M
3300031751\|Ga0318494_10396324	Not Available	801	Open in IMG/M
3300031777\|Ga0318543_10409283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300031778\|Ga0318498_10182621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	953	Open in IMG/M
3300031794\|Ga0318503_10190648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	664	Open in IMG/M
3300031797\|Ga0318550_10470081	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300031845\|Ga0318511_10007055	All Organisms → cellular organisms → Bacteria → Proteobacteria	3613	Open in IMG/M
3300031845\|Ga0318511_10013302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2849	Open in IMG/M
3300031845\|Ga0318511_10621333	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300031846\|Ga0318512_10290645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	811	Open in IMG/M
3300031859\|Ga0318527_10259916	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300031890\|Ga0306925_11678936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300031890\|Ga0306925_11728835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300031896\|Ga0318551_10027273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2728	Open in IMG/M
3300031910\|Ga0306923_12155686	Not Available	560	Open in IMG/M
3300031912\|Ga0306921_10128549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2956	Open in IMG/M
3300031912\|Ga0306921_10490739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1429	Open in IMG/M
3300031912\|Ga0306921_11888455	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300031941\|Ga0310912_10239436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1394	Open in IMG/M
3300031941\|Ga0310912_11144590	Not Available	593	Open in IMG/M
3300031946\|Ga0310910_10125948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1934	Open in IMG/M
3300031946\|Ga0310910_11023047	Not Available	645	Open in IMG/M
3300031947\|Ga0310909_10043623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3403	Open in IMG/M
3300031981\|Ga0318531_10015750	All Organisms → cellular organisms → Bacteria → Proteobacteria	2936	Open in IMG/M
3300032001\|Ga0306922_11531991	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300032013\|Ga0310906_10192331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1230	Open in IMG/M
3300032042\|Ga0318545_10277221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	602	Open in IMG/M
3300032051\|Ga0318532_10002189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5251	Open in IMG/M
3300032051\|Ga0318532_10009967	All Organisms → cellular organisms → Bacteria → Proteobacteria	2891	Open in IMG/M
3300032059\|Ga0318533_10557131	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300032064\|Ga0318510_10008049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2961	Open in IMG/M
3300032076\|Ga0306924_10560312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1296	Open in IMG/M
3300032180\|Ga0307471_103033315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596	Open in IMG/M
3300033289\|Ga0310914_10073014	All Organisms → cellular organisms → Bacteria → Proteobacteria	2891	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.68%
Host-Associated	Host-Associated	11.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.74%
Plants	Host-Associated → Plants	11.32%
Aquatic	Environmental → Aquatic	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.49%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.89%
Sediment	Environmental → Aquatic → Sediment	0.94%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.13%
Loam	Environmental → Terrestrial → Soil → Loam	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.66%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.89%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.89%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300023168	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S064-202C-5	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_02282980	2199352025	Soil	VPQPTKNAAKRRPAATRRSPVIKAAKTQPAPHTGAEDDVKITALK
F24TB_108325432	3300000550	Soil	VPQPAKNAAKKRPIPIRRWPVVKVGKMPAQAHAGAEDDVKITALKLPPGTLSPEMDAYFKKCD
Ga0066397_101334101	3300004281	Tropical Forest Soil	VPQPAKNAAKKRPIPTRRSPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSAEMD
Ga0008092_100061401	3300004629	Tropical Rainforest Soil	MPQPAKNAAKKRPIPSRRWPVVKGGKMPASIHAGAEDDVKITALKLPPGTLSAEMDAYFKKC
Ga0066395_103306151	3300004633	Tropical Forest Soil	MPQPAKNAAKKRPIPSRRWPVVKGGKMPASIHAGAEDDVKITALKLPPGTL
Ga0066388_1062626932	3300005332	Tropical Forest Soil	VPQPAKNAAKKRPIPTRRSPVVKGGKMPAPAHPGAEDDVKITALRLPPGTLLPEMDAYFKKCDE
Ga0008090_102291262	3300005363	Tropical Rainforest Soil	VPQPAKNAAKKRPIPSRRWPVVKGGKMPASIHAGAEDDVKITALKLPPGTLSAEMDAYFKKCDE
Ga0070659_1000345233	3300005366	Corn Rhizosphere	VPQPTKNAAKKRPVPTRRSPVIKTPKASSSPHSGAEDDIKITALKLPRGELSPEMDAYFKKCD
Ga0066903_1004711491	3300005764	Tropical Forest Soil	VPQTPKTAAKKRPVPTRRSPVVKGAKAPAPAHHGAEDDIKITALALAPGKLSPEM
Ga0066903_1050920181	3300005764	Tropical Forest Soil	VPQPAKNAAKKRPPTRRWPVLKGGKMPASTHAGAEDDVKITALKLPPGTLSAEMDAYFKKCDEKL
Ga0066903_1053609401	3300005764	Tropical Forest Soil	VPQPAKNAAKKRPIPTLRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSAEMDA
Ga0068851_101252331	3300005834	Corn Rhizosphere	VPQPTKNAAKKRPVPTRRSPVIKTPKASSSPHSGAEDDVKITALKLPPGELSPEM
Ga0081455_100884421	3300005937	Tabebuia Heterophylla Rhizosphere	VPQTPKTAAKKRPVPTRRSPVVKGAKTPAPAHGGAEDDIKITALALVPGKLSPEMAA
Ga0075365_102684271	3300006038	Populus Endosphere	VPQIAKPAANKTAAKKRPIPTRRSPVVKGGKTPAAPRSGALDDVEITALALPPGKLSP
Ga0075417_101658762	3300006049	Populus Rhizosphere	VPQSAKNLPKKRPIPTRRSPVVKGGKTAAPPSRGEDDVKITALKLPPGKLSPEMDAYFKKCD
Ga0066659_110317602	3300006797	Soil	VPQPAKNAAKKRPIPIRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGTLSPEMDAYFKKCD
Ga0075420_1016501471	3300006853	Populus Rhizosphere	VRQPAKDAAKKRPVPTKRSPVVKEAKAPPAAHSGAEDDVRITALALAPGKLS
Ga0075418_129642072	3300009100	Populus Rhizosphere	VRQPAKDAAKKRPVPTKRSPVVKEAKAPPAAHSGAEDDVRITALALAPGKLSPEMAAYFKKCDEKL
Ga0114129_113598821	3300009147	Populus Rhizosphere	VPKKTKTRTKTAAKKRPIPTRRSPVVKGAKMPAPAHSGAKDDIKITALALAPGKLSPEMEAYFKKCEEKLG
Ga0126377_100676071	3300010362	Tropical Forest Soil	VPQTPKTAAKKRPVPTRRSPVVKGAKTPAPAHGGAEDDIKITALALVPGKLSPEMAAYFKKCV*
Ga0126379_105206281	3300010366	Tropical Forest Soil	VPQPAKNVAKKRPIPTRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGT
Ga0134125_102222052	3300010371	Terrestrial Soil	VPQPTKNAAKKRPVPTRRSPVIKTPKASSSPHSGAEDDIKITALKLPRGELSPEMDAYFKKCDE
Ga0126383_133508262	3300010398	Tropical Forest Soil	VPRSKNAAKKRPVPTKRSPPVDHASACPGAEDDVKITALA
Ga0137389_111196592	3300012096	Vadose Zone Soil	VPQQTKNVAKKRPVPTKRSPVTGGVKAAEAKVFAHTGAEDDVRITALKLPPGKLSPEMEAYFKKCDEK
Ga0157301_103497451	3300012911	Soil	VPQPTKNAAKKRPVPTRRSAVIKTPKALSSPHSGAEDDVKITALKLPPGQLSPEM
Ga0137394_109112862	3300012922	Vadose Zone Soil	VPQPTKNAAKRRPAPTRRSPVIKAAKTRPAPHTGAEDDVKITALKLSPGELSPEMDAYFKKCD
Ga0164298_102003252	3300012955	Soil	VPQPTKNAAKKRPVPTRRSPVIKTPKASSSPHSGADDDVKITALKLPPGELSP
Ga0126369_127992691	3300012971	Tropical Forest Soil	VPQPAKNAAKKRPIPTRRSPVVKGGKMPAPTHAGAEDDVKITALKLP
Ga0157374_100484041	3300013296	Miscanthus Rhizosphere	VPQPTKNAAKKRPVPTRRSPVIKTPKASSSPHSGAEDDIKITALKLPRGELS
Ga0157376_108954562	3300014969	Miscanthus Rhizosphere	VPQPTKNAPKKRPVPTRRSPVIKTPKTSSSPHSGAEDDIKITA
Ga0182041_112290102	3300016294	Soil	VPQPAKNAAKKPPIPTRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSAEMDAYF
Ga0182041_117150732	3300016294	Soil	VPQPAKNAAKKRPIPSRRWPVVKGGKMPASIHAGAEDDVKITALKLPPGTLSAEMDAYF
Ga0182041_121931981	3300016294	Soil	VPQPAKTAAKKRPIPTRRWPLVKGGKMPAPAHAGAEDDVKITALKLPPGTLSAEMDA
Ga0182035_100776613	3300016341	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGTLSAEMDAYFKKCDE
Ga0182035_112476312	3300016341	Soil	VPQPAKNAAKKPPIPTRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSAEMD
Ga0182035_116079731	3300016341	Soil	VPQPAKNAAKKRPIPSRRWPVVKGGKMPASIHAGAEDDVKITALKLPPGTLSAEMDAY
Ga0182032_113469001	3300016357	Soil	VPQPAKNAAKKRPIPSRRWPVVKGGKMPASIHAGAEDDVKITALKLPPGTLSAEMDAYFKKCDEKL
Ga0182034_105417662	3300016371	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGTLSAEMDAYFKKC
Ga0182034_115123391	3300016371	Soil	VPQPAKNAVKKWPIPTRRSPVIKDGKMSAPARGAEDDVKITALKLPPGTLSAEMDAYFK
Ga0182040_106384862	3300016387	Soil	VPQPAKNAAKKRPIPIRRWPVVKGGKMPAPTHAGAEDDVKITALKL
Ga0182040_114315782	3300016387	Soil	VPQPAKNAAKKRPIPSRRWPVVKGGKMPASIHAGAEDDVKITALKLPPGTLSAEMDAYFK
Ga0182037_106332892	3300016404	Soil	VLKTTKNAAKKRPIPTRRSPVLRNPKAPAPPHNGAEDDVKITALRLPPGKLSPEMAAYFQKCEE
Ga0182039_118642602	3300016422	Soil	VPQPAKNAAKKRPIPSRRWPVVKGGKMPASIHAGAEDDVKITALKLPPGTL
Ga0184605_104338651	3300018027	Groundwater Sediment	VPQPTKNAAKRRPAATRRSPVIKAGKTAPHTGAEDDVKITALKLPPGELSPEMDAYFKKC
Ga0066662_124705531	3300018468	Grasslands Soil	VPQPAKNAAKKRPIPIRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGTLSPEMDAYFKKC
Ga0190270_101670462	3300018469	Soil	VPQPTKNAAKKRPVPTRRSPVIKTPKASSSPHSGAEDDIKITALKL
Ga0190274_122902671	3300018476	Soil	VPQPTKNAAKKRPVPTRRSPVIKTPKASSLPHSGAEDDV
Ga0193706_11557241	3300021339	Soil	VPQPTKNAAKKRPVPTRRSPVIKTPKASSSPHSGAEDDVKITALK
Ga0193699_101827112	3300021363	Soil	VPQPTKNAAKKRPVPTRRSPVIKRKASPSVDTGAEDDVKITALKLPPGELSPEMDAYFKK
Ga0210402_109674701	3300021478	Soil	VPQPAKNAAKKRPIPIRRWPVVKGGKMPATAHAGAEDDVKITALKLPPGTLSPEMDAYFKKCEE
Ga0126371_104414871	3300021560	Tropical Forest Soil	VTKPAKNAPSSAQKTYAPKKRPIPTKRSPVVKAAAPGAEDDVKITALRLPPGPLSPKMQA
Ga0247748_10653631	3300023168	Soil	VPQPTKNAAKKRPIPTRRSPVLKAGKAHPAPHTGAEDDVKITALKLPPGKLSPEMDAYFK
Ga0207657_100506911	3300025919	Corn Rhizosphere	VPQPTKNAAKKRPVPTRRSPVIKTPKASSSPHSGAEDDVKITALKLPRGE
Ga0207691_116065031	3300025940	Miscanthus Rhizosphere	VPQPTKNAAKKRPIPTRRSPVLKGGKAHPAPHTGAEDDVKITALKLPPGKLSPEMDAY
Ga0307303_100232901	3300028713	Soil	VPQPTKNAAKRRPAATRRSPVIKAAKTHPAPHTGAEDDVKITALKLSPGELS
Ga0307311_102758052	3300028716	Soil	VPQPTKNAAKKRPVPTRRSPVIKTPKASSSPHSGADDDVKITALKLPPGE
Ga0307288_101046112	3300028778	Soil	VPQPTKNAAKRRPAPTRRSPVIKAAKTQPAPHTGAEDDVKITALKLPPGELSPEMDAY
Ga0307305_102160562	3300028807	Soil	VPQPTKNAAKRRPAPTRRSPVIKAAKTQPAPHTGAEDDVKITALKLPPGELSPEMDAYFKKC
Ga0307296_103172002	3300028819	Soil	VPQSTKNAAKKRPVPTRRSPVIKTPKASSSPHSGAEDDVKITALKLPPGELSPEMDAYFKKC
Ga0307310_100850541	3300028824	Soil	VPQPTKNAAKRRPAATRRSPVIKAGKTAPHTGAEDDVKITALKLPPGELSPEMDAYFKK
Ga0307289_102723502	3300028875	Soil	VPQPTKNAAKRRPAPTRRSPVIKAAKTHPAPHTGAEDDVKITAL
Ga0318534_100731333	3300031544	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGTLSAEMDAYFKKCD
Ga0318541_104945071	3300031545	Soil	VPQPAKNAAKKPPIPTRRWPVVKGGKMPAPTHAGAEDDVKITAL
Ga0318541_105836572	3300031545	Soil	VPQPAKNAAKKRPIPIRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSA
Ga0318538_100436451	3300031546	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGTLSAE
Ga0318528_100936053	3300031561	Soil	VPQPAKNAAKKRPIPIRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSAE
Ga0310886_107323402	3300031562	Soil	VPQPTKNAAKKRPVPTRRSPIIKTTKASSSPHSSAEDDVKITALKLPPGELSREMDAYFK
Ga0310915_107016951	3300031573	Soil	VPQPAKNAAKKRPIPTRRSPVVKGGKRPAPAHPGAEDDVKI
Ga0318542_101894901	3300031668	Soil	VPQPAKNAAKKRPIPIRRWPVVKGGKIPAPTHAGAEDDVK
Ga0306917_104378641	3300031719	Soil	VPQPAKNAAKKWPIPTRRSPVIKDGKMSAPARGAEDDVKITALKLPPG
Ga0318500_101476403	3300031724	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSAEMDAYFK
Ga0306918_107168021	3300031744	Soil	VPQPAKNAAKKRPIPIRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSAEMDAYFKKCDEK
Ga0318492_100353181	3300031748	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALK
Ga0318494_103963242	3300031751	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGTLSAEMDAYFKKCDEK
Ga0318543_104092831	3300031777	Soil	VPQPAKNAAKKRPIPSRRWPVVKGGKMPASIHAGAEDDVKITALKLPPGTLSAEMDAYFKKCD
Ga0318498_101826211	3300031778	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPTHAGAEDDVKITAL
Ga0318503_101906481	3300031794	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPTHAGAEDDVK
Ga0318550_104700811	3300031797	Soil	VPQPAKNAAKKRPIPIRRWPVVKGGKMPAPTHAGAEDYVKITALKLPPGTLSAEMDAYF
Ga0318511_100070555	3300031845	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGT
Ga0318511_100133021	3300031845	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPQETLSPEMD
Ga0318511_106213333	3300031845	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSA
Ga0318512_102906451	3300031846	Soil	VLKTTKNAAKKRPIPTRRSPVLRNPKAPAPPHNGAEDDVKI
Ga0318527_102599161	3300031859	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTL
Ga0306925_116789361	3300031890	Soil	VPQPAKNAAKKRPIPTRRSPVVKGGKMPAPAHPGAEDDVKITALRLPP
Ga0306925_117288352	3300031890	Soil	VPQPAKNAAKKRPIPSRRWPVVKGGKMPASIHAGAEDDVKITALKLPPGTLSAEMDAYFKKCDEK
Ga0318551_100272731	3300031896	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPETLSPEMDA
Ga0306923_121556863	3300031910	Soil	VPQPAKNAAKKRPIPTRRSPVVKGGKMPAPAHPGAEDAVKITALRLPPGT
Ga0306921_101285491	3300031912	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLP
Ga0306921_104907391	3300031912	Soil	VPQPAKNAAKKRPIPIRRWPVVKGGKMPAPTHAGAEDYVKITA
Ga0306921_118884551	3300031912	Soil	VPQPAKNAAKKRPIPTRRSPVVKGGKRPAPAHPGAEDDVKITA
Ga0310912_102394361	3300031941	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSAE
Ga0310912_111445901	3300031941	Soil	VPQPAKNAAKKWPIPTRRSPVIKDGKMSAPARGAEDDVKITALKLPPGTLSPE
Ga0310910_101259481	3300031946	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGTCRRRW
Ga0310910_110230472	3300031946	Soil	VPQPAKNAAKKRPIPTRPSPVVKDGTMHAPAHAGAEDDVKITALKLPPGTLSPEMDAYFKKC
Ga0310909_100436232	3300031947	Soil	VPQPAKNAAKKRPIPTRRSPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSAEMDAYFK
Ga0318531_100157501	3300031981	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGTLSAEMDAYFKKCDEKLG
Ga0306922_115319911	3300032001	Soil	VPQPAKNAAKKPPIPTRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSA
Ga0310906_101923312	3300032013	Soil	VPQPTKNAAKKRPVPTRRSPVIKTPKASSSPHSGAEDDIKITALK
Ga0318545_102772212	3300032042	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPLETLSP
Ga0318532_100021891	3300032051	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGVEDDVKITALKL
Ga0318532_100099671	3300032051	Soil	VPQPAKNAAKKRPIPIRRWPVVKGGKMPAPTHAGAEDDVKITALKLPPGTLSAEMDAYFK
Ga0318533_105571311	3300032059	Soil	VPQPAKNAAKKPPIPTRRWPVVKGGKMPAPTHAGAEDDVKITALK
Ga0318510_100080492	3300032064	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPQETLSPEMDAYFKKCD
Ga0306924_105603121	3300032076	Soil	VPQPAKNAAKKRPIPTRRSPVVKGGKRPAPAHPGAEDDVKITALRLPPAGI
Ga0307471_1030333152	3300032180	Hardwood Forest Soil	VPQPTKNAAKRRPAATRRSPVIKAAKAQPAPHAGAEDDVKITALKLPPGEL
Ga0310914_100730145	3300033289	Soil	VPQPAKNAAKKRPIPTRRWPVVKGGKMPAPAHAGAEDDVKITALKLPPGTLSAEMDAYFKKCDEKL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093555

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences