Metagenome / Metatranscriptome Family F093552

Overview

Basic Information

• Family ID: F093552
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 106
• Average Sequence Length: 40 residues
• Representative Sequence: YELAFIWGVGPRVEEPGINLIRSFAYSGPLEDLRLKRP
• Number of Associated Samples: 88
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 3.77 %
• % of genes near scaffold ends (potentially truncated): 91.51 %
• % of genes from short scaffolds (< 2000 bps): 90.57 %
• Associated GOLD sequencing projects: 88
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (93.396 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.981 % of family members)
• Environment Ontology (ENVO): Unclassified (26.415 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (36.792 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 0.00%
  Coil/Unstructured: 100.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF05157	T2SSE_N	8.49
PF05643	DUF799	7.55
PF00496	SBP_bac_5	4.72
PF02615	Ldh_2	4.72
PF12697	Abhydrolase_6	3.77
PF05378	Hydant_A_N	2.83
PF09948	DUF2182	2.83
PF13671	AAA_33	1.89
PF04909	Amidohydro_2	1.89
PF02604	PhdYeFM_antitox	1.89

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG4380	Uncharacterized conserved protein, DUF799 domain	Function unknown [S]	7.55
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	5.66
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	4.72
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	1.89
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	1.89
COG5517	3-phenylpropionate/cinnamic acid dioxygenase, small subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.94
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.94
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.94

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.40 %
Polyangium	genus	Polyangium	0.94 %
Unclassified	root	N/A	5.66 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.40 %
Polyangium aurulentum	species	Polyangium → Polyangium aurulentum	0.94 %
Unclassified	root	N/A	5.66 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.40 %
Polyangium aurulentum	species	Polyangium → Polyangium aurulentum	0.94 %
Unclassified	root	N/A	5.66 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.83 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	14.15 %
Polyangium aurulentum	species	Polyangium → Polyangium aurulentum	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.91 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %
Unclassified	root	N/A	5.66 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.15 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	14.15 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.77 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.89 %
Polyangium aurulentum	species	Polyangium → Polyangium aurulentum	0.94 %
Unclassified	root	N/A	5.66 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.83 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	14.15 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.77 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Polyangium aurulentum	species	Polyangium → Polyangium aurulentum	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.89 %
Unclassified	root	N/A	5.66 %
unclassified Candidatus Omnitrophica	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica	0.94 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %
Desulfovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.89 %
Omnitrophica WOR_2 bacterium GWF2_63_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Omnitrophica WOR_2 bacterium GWF2_63_9	0.94 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.94 %
Polyangium aurulentum	species	Polyangium → Polyangium aurulentum	0.94 %
Unclassified	root	N/A	5.66 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	9.43 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.89 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	1.89 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.83 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.43 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.89 %
Desulfonatronaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfonatronaceae	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.89 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.94 %
Omnitrophica WOR_2 bacterium GWF2_63_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Omnitrophica WOR_2 bacterium GWF2_63_9	0.94 %
Polyangium aurulentum	species	Polyangium → Polyangium aurulentum	0.94 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.94 %
Unclassified	root	N/A	5.66 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.83 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.43 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.89 %
Desulfonatronum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfonatronaceae → Desulfonatronum	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.89 %
Omnitrophica WOR_2 bacterium GWF2_63_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Omnitrophica WOR_2 bacterium GWF2_63_9	0.94 %
Polyangium aurulentum	species	Polyangium → Polyangium aurulentum	0.94 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.94 %
Unclassified	root	N/A	5.66 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.94 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.83 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.43 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.89 %
Desulfonatronum lacustre	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfonatronaceae → Desulfonatronum → Desulfonatronum lacustre	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.89 %
Mesorhizobium sp. M2A.F.Ca.ET.037.01.1.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. M2A.F.Ca.ET.037.01.1.1	0.94 %
Omnitrophica WOR_2 bacterium GWF2_63_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Omnitrophica WOR_2 bacterium GWF2_63_9	0.94 %
Polyangium aurulentum	species	Polyangium → Polyangium aurulentum	0.94 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.94 %
Unclassified	root	N/A	5.66 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000364|INPhiseqgaiiFebDRAFT_100769682	All Organisms → cellular organisms → Bacteria	1001
3300000891|JGI10214J12806_11507570	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	581
3300000956|JGI10216J12902_118146145	All Organisms → cellular organisms → Bacteria	509
3300002911|JGI25390J43892_10061174	All Organisms → cellular organisms → Bacteria	878
3300004643|Ga0062591_102707423	All Organisms → cellular organisms → Bacteria	524
3300005172|Ga0066683_10029027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3171
3300005330|Ga0070690_100291159	All Organisms → cellular organisms → Bacteria	1168
3300005353|Ga0070669_100143663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1842
3300005445|Ga0070708_101780019	All Organisms → cellular organisms → Bacteria → Proteobacteria	572
3300005536|Ga0070697_101395380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	625

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.91%
Host-Associated	Host-Associated	15.09%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	10.38%
Fungi	Host-Associated → Fungi	0.94%
Plants	Host-Associated → Plants	14.15%
Terrestrial	Environmental → Terrestrial	74.53%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	5.66%
Mycelium	Host-Associated → Fungi → Mycelium	0.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.26%
Sediment	Environmental → Aquatic → Sediment	4.72%
Soil	Environmental → Terrestrial → Soil	74.53%

Type

Habitat	Taxonomy	Distribution
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Lake	Environmental → Aquatic → Freshwater → Lake	0.94%
Loam	Environmental → Terrestrial → Soil → Loam	5.66%
Sand	Environmental → Terrestrial → Soil → Sand	2.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.94%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.98%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.94%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	0.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.77%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.94%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.94%

Habitat

Habitat	Taxonomy	Distribution
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.72%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.55%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.89%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.49%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.98%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	0.94%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1007696821	3300000364	Soil	LAFIWGVGPTVEEPGINLIRSFAYSAPLEDLKLKKP*
JGI10214J12806_115075702	3300000891	Soil	IYELAFIWGVGPRVEEPGINLIRSFAYSGPLEDLKLKRP*
JGI10216J12902_1181461451	3300000956	Soil	YELAFIWGVGPRLEEPGINLIRSFAYSAPLEDLRLKRP*
JGI25390J43892_100611742	3300002911	Grasslands Soil	RPSSTRVTHIPIYELAFIWGVGPRVEEPGINQIRSFSYSGPLEDLRVKRP*
Ga0062591_1027074232	3300004643	Soil	PLYELAFIWGVGPTVEEPGINLVRSFAYSAPLEDIKLKKP*
Ga0066683_100290276	3300005172	Soil	VTHIPIYELAFIWGVGPRVEEPGINQIRSFSYSGPLEDLRVKRP*
Ga0070690_1002911593	3300005330	Switchgrass Rhizosphere	THIPIYELAFIWGVGPRLEEPGINLIRSFAYSAPLEDLRLKRP*
Ga0070669_1001436631	3300005353	Switchgrass Rhizosphere	YVPIYELAFIWGVGPTVEEPGINLIRSFAYSAPLEDLKLKKP*
Ga0070708_1017800192	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	IPIYELAFIWGVSPRVEEPGVNLIRSFAYSGPLEDLRVKK*
Ga0070697_1013953801	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RVTHIPIYELAFIWGVHPRVEEPGVNLIRSFAYSGPVEDVRLKRQ*
Ga0066701_106076341	3300005552	Soil	LAFIWGVGPRVEEPGVNLIKSFAYSAPLEDLRLKRP*
Ga0066695_108733921	3300005553	Soil	YELAFIWGVGPRVEESGAWLIPGYAYSAPAEDLKLKK*
Ga0066700_110885031	3300005559	Soil	FIWGVGPRVEEPGINLIRGFAYSAPLEDVKLKRP*
Ga0066703_101707951	3300005568	Soil	HIPIYELAFIWGVGPRVEEPGINQIRSFSYSGPLEDLRVKRP*
Ga0068859_1008869431	3300005617	Switchgrass Rhizosphere	FTWGIGPRLEEPGISLIRGYAYSAPYEDLKLKKP*
Ga0068859_1009316392	3300005617	Switchgrass Rhizosphere	AFIWGVGPRLEEPGINLIRSFAYSAPLEDLRLKRP*
Ga0066905_1012438722	3300005713	Tropical Forest Soil	LAFIWGVGPRVEEPGINLVRSFAYSAPLEDVKLKRP*
Ga0066659_119012061	3300006797	Soil	AFIWGVNPRVEEPGINLIRSYSYSAPYEDLKLKRP*
Ga0075421_1008518762	3300006845	Populus Rhizosphere	FIWGVGPRVEESGANLIPGFAYSAPFEDLKLKKP*
Ga0075420_1002552203	3300006853	Populus Rhizosphere	HIPIYELAFIWGVGPTVEEPGINLIRSFAYSGPLEDLKLKRP*
Ga0075434_1000691034	3300006871	Populus Rhizosphere	VPIYELAFIWGVGPSVAEPGINLIRSFAYSGPLEDVRLKGR*
Ga0075424_1008881671	3300006904	Populus Rhizosphere	YELAFIWGVGPRVEEPGINLIRSFAYSGPLEDLRLKRP*
Ga0075436_1012732902	3300006914	Populus Rhizosphere	AFTWGIGPRLEEPGISLIKGYAYSAPYEDMKLKRP*
Ga0075419_104922622	3300006969	Populus Rhizosphere	PIYELAFIWGVGPSVDEPGINLIRSFAYSGPLEDVRLKRR*
Ga0099828_104335522	3300009089	Vadose Zone Soil	LHDRMIQIPIYELAFIWGVSPRVDEPGINLIRSFAYSGPLEDVKIKRP*
Ga0099828_104973341	3300009089	Vadose Zone Soil	FIWGVGPRVEEPGVNLIKSFAYSAPLEDLRLKRP*
Ga0075418_112761362	3300009100	Populus Rhizosphere	YDRVTHIPIYELAFIWGVGPTVEEPGINLIRSFAYSGPLEDLKLKRP*
Ga0075418_122755782	3300009100	Populus Rhizosphere	AFTWGIGPRLEEPGISLIRGYAYSAPYEDLRLKKP*
Ga0075418_129930252	3300009100	Populus Rhizosphere	LYDRVMYVPIYELAFIWGVGPTVDEPGINLIRSFAYSGPLEDVKLKKP*
Ga0114129_123945342	3300009147	Populus Rhizosphere	VTHIPIYELGLIWGVGPRVEEPGINLVRSFAYSAPLEDVKLNRP*
Ga0114129_132102282	3300009147	Populus Rhizosphere	VIQIPIYELAFIWGVGPRVEEPGISLIRSFASSGPLEDVRIKRP*
Ga0105092_102382943	3300009157	Freshwater Sediment	IYELAFIWGVGPRLEEPGINLIRSFAYSGPLEDLRLKRP*
Ga0105059_10628042	3300009795	Groundwater Sand	YDRMTHIPIYELAFIWSVGPRVQEPGINLVRSFAYSAPLEDVRLKRP*
Ga0105057_11006911	3300009813	Groundwater Sand	ELGFIWGVGPRVEDPGVNLIRAFAYSGPLEDVKLKRP*
Ga0126384_116606231	3300010046	Tropical Forest Soil	FIWGVGPRAEEPGVNLIRSFAYSGPLEDLRLKRP*
Ga0126384_119826232	3300010046	Tropical Forest Soil	VTHIPIYELAFIWGVGPRAEEPGINLIRSFAYSGPLEDLRIKK*
Ga0126382_103516991	3300010047	Tropical Forest Soil	LYELAFIWGVSPRVEEPGINLIRSFAYSAPLEEVRFKRP*
Ga0134088_100261883	3300010304	Grasslands Soil	FTWGIGPRLEEPGISLIRGYAYSAPYEDLKLKRP*
Ga0134071_101563201	3300010336	Grasslands Soil	SAFLWAIGPRVEEPGLSLIPSHAYSAPYEDVKLKRP*
Ga0134062_105199761	3300010337	Grasslands Soil	LAFIWGVGPRVEEPGINLIRSFAYSGPLEDVKVKRP*
Ga0134062_106926091	3300010337	Grasslands Soil	VTHIPIYELAFIWGVGPRVEEPGINQLRSFSYSGPLEDLRVKRP*
Ga0126370_117074402	3300010358	Tropical Forest Soil	IYELAFIWGVGPRVEEPGINLIRSFAYSGPLEDLRIKK*
Ga0126377_135906832	3300010362	Tropical Forest Soil	FTWGVSPRVEEPGINLIRSYAYSAPYEDLRLKHP*
Ga0126379_123798032	3300010366	Tropical Forest Soil	FIWGVSPRVEEPGINLIRSYAYSAPYEDLRLKRP*
Ga0126379_132548612	3300010366	Tropical Forest Soil	IQIPIYELAFIWGVSPRVEEPGINLIRSFAYSGPLEDVRIKRP*
Ga0136847_110427022	3300010391	Freshwater Sediment	AFIWGVGPRVEEAGAGLIPGFAYSAPFEDLKVRK*
Ga0153974_11741361	3300012180	Attine Ant Fungus Gardens	LAFIWGVSPRVEEPGINLIRSHAYSAPYEDLRLKRP*
Ga0137388_107419723	3300012189	Vadose Zone Soil	LAFIWGVGPRVEEPGVNLIRSFAYSGPLEDVKLKQP*
Ga0137399_116494032	3300012203	Vadose Zone Soil	LAFTWGIGPRLEEPGISLIRGYAYSAPYEDLKLKKP*
Ga0137362_103742821	3300012205	Vadose Zone Soil	MIQIPIYELAFIWGVSPRVEEPGINLIRSFAYSGPLEDVKIKRP*
Ga0137379_104422754	3300012209	Vadose Zone Soil	YELAFIWGVGPRVEEPGINLIRSFAYSGPLEDVRVKRP*
Ga0137377_115153661	3300012211	Vadose Zone Soil	DHPPRGVTHIPIYELAFIWGVGPRVEEPGINQIRSFSYSGPLEDLRVKRP*
Ga0137372_104155731	3300012350	Vadose Zone Soil	ELAFIWGVGPRVEEPGVNLIRSFAYSGPLEDVKLKRP*
Ga0137386_108877902	3300012351	Vadose Zone Soil	LAFIWGVSPRVEEPGINLIRSYAYSAPYEDLRLKRP*
Ga0137369_103273332	3300012355	Vadose Zone Soil	VTHIPIYELAFIWGVGPTVDESGINLIRSFAYSGPLEDLRLKRP*
Ga0137360_105965631	3300012361	Vadose Zone Soil	IYDLAFIWGVGPRVEEPGINLVRSFAYSAPLEDVKLKRP*
Ga0137361_117546872	3300012362	Vadose Zone Soil	LHDRMIQIPIYELAFIWGVNPRVEEPGINLIRSFAYSGPLEDVKIKRP*
Ga0157331_10392682	3300012486	Soil	MHVPIYELAFTWGIGPRVEEPGINIIKGFAYSGPLEDLKLKKQ*
Ga0137396_110443462	3300012918	Vadose Zone Soil	LAFIWGVGPRVEEPGINLIRSYAYSAPLEDLRLKRP*
Ga0137396_112357742	3300012918	Vadose Zone Soil	YELAFIWGVGPSVDEPGVNLIRSYAYSAPLEDLRLKRP*
Ga0137407_101469493	3300012930	Vadose Zone Soil	IPIYELAFIWGVGPTVDEPGVNLIRSFAYSGPLEDVRLKRP*
Ga0137407_120050602	3300012930	Vadose Zone Soil	AFIWGVGPRVQEPCAGLIAGFPYSAPLEDVTLKK*
Ga0137410_100414644	3300012944	Vadose Zone Soil	RVTHVPIYELAFIWGVGPTVEEPGINLIRSFAYSGPLEELRLKRR*
Ga0126369_118108741	3300012971	Tropical Forest Soil	HDRMIQIPIYELAFIWGVSPRVEEPGINLIRSFAYSGPLEDVKIKRP*
Ga0126369_134043103	3300012971	Tropical Forest Soil	YELAFIWGVSPRVEEPGINLIRSYSYSAPYEDLRLKRP*
Ga0134076_102228632	3300012976	Grasslands Soil	THIPIYELAFIWGVGPRVEEPGINLNRSFAYSGPLEDVRVKRP*
Ga0134075_101578331	3300014154	Grasslands Soil	LAFTWGIGPRLEEPGISLIRGYAYSAPYEDLKLKRP*
Ga0134075_104661941	3300014154	Grasslands Soil	GVTHIPIYELAFIWGVGPRVEEPGINQIRSFSYSGPLEDLRVKRP*
Ga0180094_10796771	3300014881	Soil	MTIWGVGPRVEESGANLIPGFAYSAPFEDLQLRK*
Ga0134069_13329231	3300017654	Grasslands Soil	IYELAFIWGVGPTVAEPGINLIRSFAYSGPLEDVRLKGR
Ga0184626_100792413	3300018053	Groundwater Sediment	YDRVTHIPIYELAFIWGVGPTVDEPGVNLIRSFAYSGPLEDLRLKRP
Ga0184612_102595951	3300018078	Groundwater Sediment	HIPIYELAFIWGVGPTVDEPGVNLIRSFAYSGPLEDLRLKRP
Ga0184627_100402925	3300018079	Groundwater Sediment	VTQIPIYELAFIWGVGSRVEEPGVNLVRSFAYSAPLEDLRLKRP
Ga0184627_102742302	3300018079	Groundwater Sediment	LAFIWGVGPRVEEPGVNLIRSYAYSGPLEDLRLKRP
Ga0190265_100729173	3300018422	Soil	VTHIPIYELAFIWGVGPTVEEPGINLIRSFAYSGPLEDLRLKKP
Ga0066655_100821913	3300018431	Grasslands Soil	ELAFTWGIGPRLEEPGISLIRGYAYSAPYEDLKLKRP
Ga0066655_104867102	3300018431	Grasslands Soil	VTHIPIYELAFIWGVGPRVEEPGINQIRSFSYSGPLEDLRVKRP
Ga0180118_11622941	3300020063	Groundwater Sediment	IYELAFIWGVSPRVEEPGVNLIRSFAYSAPLEDLRLKRP
Ga0210379_103273662	3300021081	Groundwater Sediment	AFIWGVGPRVDEPGINLVRSFAYSAPLEDLRLKRP
Ga0210377_107950402	3300021090	Groundwater Sediment	THIPIYELAFIWGVGPTVDEPGVNLIRSFAYSAPLEDLRLKRP
Ga0209824_101487312	3300025173	Wastewater	MERAVLTHIPLYELAFIWGVGPGVEEPGINLIRSFAYSGPLEDVKLKRP
Ga0207646_102827673	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LYELAFIWGVGPRVEEPGINLIRSFAYSGPLEDLRLKRP
Ga0207708_102470911	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	LAFIWGVGPRVEEPGINLIRSYAYSAPLEDLRIKK
Ga0209438_11366082	3300026285	Grasslands Soil	ELAFIWGVGPRVEEPGINLIRSYAYSAPLEDLRIKK
Ga0209238_11118552	3300026301	Grasslands Soil	VTHIPIYELAFIWGVGPRVEEPGINQILSFSYSGPLEDLRVKRP
Ga0209470_10272711	3300026324	Soil	LGFIWGVGPRVEEPGINLIRGFAYSAPLEDVKLKRP
Ga0209801_10328551	3300026326	Soil	PDHPPRGVTHIPIYELAFIWGVGPRVEEPGINQIRSFSYSGPLEDLRVKRP
Ga0209807_11164742	3300026530	Soil	ELGFIWGVGPRVEEPGINLIRGFAYSAPLEDVKLKRP
Ga0209376_13660521	3300026540	Soil	AFIWGVGPRVDEPGINLVRSFAYSAPLEDMKLKRP
Ga0209488_108674282	3300027903	Vadose Zone Soil	LAFIWGVGPRVEEPGINLIRSFAYSGPLEDVRIKRP
Ga0209857_10838481	3300027957	Groundwater Sand	YELAFIWGVGPRVEEPGINLIRSFAYSGPLEDVKLKRP
Ga0307469_103989821	3300031720	Hardwood Forest Soil	LAFIWGVGPRVEEPGVNLIRSFAYSGPLEDVKLKKP
Ga0307469_104017981	3300031720	Hardwood Forest Soil	PIYELAFIWGVGPSVEEPGINLVRSFAYSAPLEDIKLKKP
Ga0307469_118413052	3300031720	Hardwood Forest Soil	IYELAFIWGVGPRVEEPGINLVRSFAYSAPLEDVKLKRP
Ga0307469_118480613	3300031720	Hardwood Forest Soil	ELAFIWGVGPTVAEPGINLIRSFAYSGPLEDVRLKGR
Ga0318509_100955691	3300031768	Soil	AFIWGVGPRVEEPGINLIRSFAYSGPLEDVRIKRP
Ga0307473_101176913	3300031820	Hardwood Forest Soil	THIPIYELAFIWGVGSRVEEPGINLVRSFAYSAPLEDVKLKRP
Ga0318527_101583201	3300031859	Soil	SFIWGVSPRVEEPGINLIRSYAYSAPYEDLRLKRP
Ga0214473_114615481	3300031949	Soil	RVTQIPIYELGFIWGVGPRAEEPGINLIRSYAYSAPLEDLKLKKP
Ga0306922_115383911	3300032001	Soil	YENAFIWGVGPRVEEPGINLVRGYAYSAPYEELRLRRP
Ga0307411_107039152	3300032005	Rhizosphere	RVTHIPIYELAFIWGVGPTVEEPGINLIRSFAYSGPLEDLRLKKP
Ga0310890_100394821	3300032075	Soil	IPIYELAFIWGVGPTVEEPGINLIRSFAYSGPLEDLRLKRP
Ga0307471_1008345472	3300032180	Hardwood Forest Soil	PIYELAFIWGVGPSVEEPGINLIRSFAYSAPLEDLKLKKP
Ga0307471_1014982601	3300032180	Hardwood Forest Soil	VPIYELAFIWGVGPTVAEPGINLIRSFAYSGPLEDVRLKGR
Ga0307472_1006124481	3300032205	Hardwood Forest Soil	VTHVPIYELAFIWGVGPTVAEPGINLIRSFAYSGPLEDVRLKGR
Ga0314793_021782_570_704	3300034668	Soil	VTHIPIYELAFIWGVGPTVEEPGINLIRSFAYSGPLEDLRLKRP