NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F093538

Metagenome Family F093538

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093538
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 49 residues
Representative Sequence PILITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Number of Associated Samples 78
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 1.89 %
% of genes from short scaffolds (< 2000 bps) 1.89 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (98.113 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(21.698 % of family members)
Environment Ontology (ENVO) Unclassified
(50.943 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(50.943 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.
1RCM31_102122673
2JGI24766J26685_100341381
3Ga0031655_103632631
4Ga0070374_102688051
5Ga0068877_106724741
6Ga0068876_103536663
7Ga0068876_107432313
8Ga0068872_107300021
9Ga0049081_100949203
10Ga0073913_100466272
11Ga0070749_100503635
12Ga0070749_106081233
13Ga0075464_106800532
14Ga0075459_10660251
15Ga0075473_102732092
16Ga0075472_104633702
17Ga0099848_11784181
18Ga0099850_13633862
19Ga0114340_11700631
20Ga0114343_12033803
21Ga0114350_11488632
22Ga0114351_10244435
23Ga0114351_11958941
24Ga0114840_10223903
25Ga0114353_11186994
26Ga0114363_10471511
27Ga0114363_11460341
28Ga0114363_11562861
29Ga0114363_12383862
30Ga0114878_11117643
31Ga0114876_10992701
32Ga0114876_11634311
33Ga0114880_11706873
34Ga0114880_12157482
35Ga0102891_11493812
36Ga0105098_102183343
37Ga0114978_100149121
38Ga0114974_101852911
39Ga0129333_112706981
40Ga0129333_116071252
41Ga0157498_10142001
42Ga0177922_100044274
43Ga0177922_102101653
44Ga0177922_109738363
45Ga0181363_10165045
46Ga0181363_10595891
47Ga0181350_11555062
48Ga0181347_12142142
49Ga0181352_10635671
50Ga0181352_11054062
51Ga0181344_10664421
52Ga0181344_10912821
53Ga0181344_12018362
54Ga0181343_10892181
55Ga0181355_12184721
56Ga0181355_13142322
57Ga0211734_100626421
58Ga0211729_102327822
59Ga0208089_10342192
60Ga0208231_10329322
61Ga0208723_10205211
62Ga0181353_11132772
63Ga0181354_10384804
64Ga0181351_10379911
65Ga0181351_12383961
66Ga0208784_11859652
67Ga0208783_100135648
68Ga0208644_100508820
69Ga0208644_11180291
70Ga0209864_10231811
71Ga0208975_10637241
72Ga0209770_102086523
73Ga0209990_101164244
74Ga0209668_105477972
75Ga0209253_110829262
76Ga0119944_10366432
77Ga0119945_10199972
78Ga0315899_100736231
79Ga0315908_108722571
80Ga0315900_101107771
81Ga0315900_105388123
82Ga0315900_108072312
83Ga0315900_109518402
84Ga0315909_109277112
85Ga0315904_106658801
86Ga0315904_108394243
87Ga0315904_113467281
88Ga0315901_102422391
89Ga0315901_103621261
90Ga0315901_105123671
91Ga0315906_108063333
92Ga0315902_100352421
93Ga0315902_111440322
94Ga0315903_102861994
95Ga0315903_106305231
96Ga0315903_110313101
97Ga0334979_0156150_1226_1369
98Ga0334985_0455322_549_749
99Ga0334995_0566471_547_666
100Ga0335000_0712601_2_148
101Ga0335012_0249478_784_918
102Ga0335031_0374291_737_901
103Ga0335068_0442821_433_612
104Ga0335058_0262728_17_151
105Ga0335017_0326032_653_847
106Ga0335048_0497971_3_197
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 58.70%    β-sheet: 0.00%    Coil/Unstructured: 41.30%
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Variant

51015202530354045PILITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNKSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
98.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Freshwater Sediment
Freshwater
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater And Sediment
Freshwater Lake Sediment
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater Lake
Freshwater
Freshwater, Surface Ice
Marine Plankton
Aquatic
Freshwater
Aqueous
Freshwater To Marine Saline Gradient
Estuarine
Sand
21.7%2.8%9.4%10.4%4.7%4.7%17.9%11.3%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
RCM31_1021226733300001851Marine PlanktonEGVPTDSPISADRRHQMKEEIYKDLHDLQVRVKLMEERNKK*
JGI24766J26685_1003413813300002161Freshwater And SedimentEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLIEERGK*
Ga0031655_1036326313300003852Freshwater Lake SedimentSSFSNRLISIESKMPALITSEGVPTDSPLSAAHRQEMKEEIQKEISDLHVRVTLLEERGRK*
Ga0070374_1026880513300005517Freshwater LakeALITAEGVPTDSPISAERRHKMKEEVYTDIHDLQVRVKLIEERSK*
Ga0068877_1067247413300005525Freshwater LakeTEIASFNNRLMSVESKMPALITPEGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK*
Ga0068876_1035366633300005527Freshwater LakeTDEGVIIDSPQSAAARQEMKDDLMHDIHDLQVRVKLMEERQK*
Ga0068876_1074323133300005527Freshwater LakeASFNNRLMSVESKMPALITAEGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERSK
Ga0068872_1073000213300005528Freshwater LakeEIASFNNRLIAIESKIPILITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK*
Ga0049081_1009492033300005581Freshwater LenticDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK*
Ga0073913_1004662723300005940SandASFNNRLIAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0070749_1005036353300006802AqueousSKIPILITEDGVPTDSPLSAAKRQELKDDLMEDIHDLQVRVKLMEERGK*
Ga0070749_1060812333300006802AqueousTEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERSK*
Ga0075464_1068005323300006805AqueousLLSEITSFQNRLIAIESKIPILITEDGVPTDSPLSAARRQELKDDIMDDIHDLQVRVKLMEERGK*
Ga0075459_106602513300006863AqueousLITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERGK*
Ga0075473_1027320923300006875AqueousGWLLSEITSFQNRLIAIESKIPILITEDGVPTDSPISAARRQDMKDDIMEDIHDLQVRVKLMEERGK*
Ga0075472_1046337023300006917AqueousSEGVPTDSPVSAARRQDMKDDIMEDIHDLQVRVKLMEERQK*
Ga0099848_117841813300007541AqueousDSPLSAAKRQELKDDLMEDIHDLQVRVKLMEERGK*
Ga0099850_136338623300007960AqueousLIAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK*
Ga0114340_117006313300008107Freshwater, PlanktonAIESKIPILITEDGVPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERGK*
Ga0114343_120338033300008110Freshwater, PlanktonLIAIESKIPILITEDGVPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERGK*
Ga0114350_114886323300008116Freshwater, PlanktonASFNNRLIAIESKIPILITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0114351_102444353300008117Freshwater, PlanktonLAAGEITSFQNRLIAIESKIPILMTEDGVPTDSPLSASKRQELKDDLMEDIHDLQVRVKLMEERNK*
Ga0114351_119589413300008117Freshwater, PlanktonSFQNRLIAIESKIPILITEDGVPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERGK*
Ga0114840_102239033300008258Freshwater, PlanktonLESKMPILITNEGVIIDSPQSAAARQEMKDDLMHDIHDLQVRVKLMEERSK*
Ga0114353_111869943300008264Freshwater, PlanktonLMSVESKMPALITAEGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK*
Ga0114363_104715113300008266Freshwater, PlanktonLIAIESKVPILITEDGVPTDSPLSASKRQELKDDLMEDIHDLQVRVKLMEERGK*
Ga0114363_114603413300008266Freshwater, PlanktonAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK*
Ga0114363_115628613300008266Freshwater, PlanktonIAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK*
Ga0114363_123838623300008266Freshwater, PlanktonSKIPILITEDGVPTDSPLSASKRQELKDDLMEDIHDLQVRVKLMEERNK*
Ga0114878_111176433300008339Freshwater LakePTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK*
Ga0114876_109927013300008448Freshwater LakeDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK*
Ga0114876_116343113300008448Freshwater LakePTDSPLSAARRQELKDDIMEDIHDLQVRVKLIEERNK*
Ga0114880_117068733300008450Freshwater LakeNRLIAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK*
Ga0114880_121574823300008450Freshwater LakeTEDGVPTDSPLSAAKRQELKDDLMEDIHDLQVRVKLMEERNK*
Ga0102891_114938123300008950EstuarineVIIDSSQSAAARQEMKDDLMHDIHDLQVRVKLMEERSK*
Ga0105098_1021833433300009081Freshwater SedimentLITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK*
Ga0114978_1001491213300009159Freshwater LakeNGVPTDSPLSAEARHKLKEELYKDIHDLQVRVKLMEERARNYAK*
Ga0114974_1018529113300009183Freshwater LakeTKIEGSMPALITPNGVPTDSPISAEARHRLKEEIYKDIHDLQVRVKLMEERQKGK*
Ga0129333_1127069813300010354Freshwater To Marine Saline GradientTDSPISAERRHKMKEEIYADIHDLQVRVKLIEERNK*
Ga0129333_1160712523300010354Freshwater To Marine Saline GradientLITEDGVPTDSPLSAAKRQELKDDLMEDIHDLQVRVKLMEERNK*
Ga0157498_101420013300012666Freshwater, Surface IceVPTDSPLSAEARHKLKEDIYKDLHDLQVRIKLMEERAKK*
Ga0177922_1000442743300013372FreshwaterLLGEITSFQNRLIAIESKIPILITEDGVPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERNK*
Ga0177922_1021016533300013372FreshwaterPALITAEGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERSK*
Ga0177922_1097383633300013372FreshwaterVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLIEERGK*
Ga0181363_101650453300017707Freshwater LakeTEIASFNNRLIAIESKIPILITEDGVPTDSPLSAAKRQQLKDEIMDDIHDLQVRTKLLEERAK
Ga0181363_105958913300017707Freshwater LakeEIASFNNRLMSVESKMPALITAEGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0181350_115550623300017716Freshwater LakeIEGQMPALITSQGVPTDSPLSAERRHAMKEEIYNDIHDLQVRVKLMEERGKH
Ga0181347_121421423300017722Freshwater LakeAEIASFNNRLIAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLIEERNK
Ga0181352_106356713300017747Freshwater LakePTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERGK
Ga0181352_110540623300017747Freshwater LakePILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVSVKLMEERNK
Ga0181344_106644213300017754Freshwater LakeTSFQNRLIAIESKIPILITEDGVPTDSPLSASKRQELKDDLMEDIHDLQVRVKLMEERNK
Ga0181344_109128213300017754Freshwater LakeMPALITPNGVPTDSPLSAEARHKLKEELYKDIHDLQVRVKLMEERARNYAK
Ga0181344_120183623300017754Freshwater LakeITAEGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0181343_108921813300017766Freshwater LakeAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0181355_121847213300017785Freshwater LakeSFNNRLIAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLIEERNK
Ga0181355_131423223300017785Freshwater LakeESKIPILITEDGVPTDSPVSASRRQQLKDEIMDDIHDLQVRTKLLEERAK
Ga0211734_1006264213300020159FreshwaterSKIPILITNEGVIIDSPQSAAARQEMKDDLMHDIHDLQVRVKLMEERGK
Ga0211729_1023278223300020172FreshwaterSIESKIPILITEGGVIIDSPQSAAARQEMKDDLMKHIHDLQVRVKLMEERNK
Ga0208089_103421923300020543FreshwaterVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0208231_103293223300020557FreshwaterEIASFNNRLIAIESKMPILITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0208723_102052113300020571FreshwaterAIESKMPILITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0181353_111327723300022179Freshwater LakeIAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0181354_103848043300022190Freshwater LakeTDSPLSATRRQELKDDIMEDIHDLQVRVKLIEERNK
Ga0181351_103799113300022407Freshwater LakeITAEGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERQK
Ga0181351_123839613300022407Freshwater LakeDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0208784_118596523300025732AqueousSKIPILITEDGVPTDSPLSAAKRQELKDDLMEDIHDLQVRVKLMEERGK
Ga0208783_1001356483300025872AqueousEDGVPTDSPLSAAKRQELKDDLMEDIHDLQVRVKLMEERGK
Ga0208644_1005088203300025889AqueousLLSIESKMPALITSEGVPTDSPVSAARRQDMKDDIMEDIHDLQVRVKLMEERQK
Ga0208644_111802913300025889AqueousESKIPILITEDGVPTDSPLSAAKRQELKDDLMEDIHDLQVRVKLMEERGK
Ga0209864_102318113300027547SandIASFNNRLIAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERN
Ga0208975_106372413300027659Freshwater LenticGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0209770_1020865233300027769Freshwater LakeITEDGVPTDSPLSASKRQELKDDLMEDIHDLQVRVKLMEERNK
Ga0209990_1011642443300027816Freshwater LakeTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERNK
Ga0209668_1054779723300027899Freshwater Lake SedimentMPALITPNGVPTDSPISAEARHKLKEELYKDIHDLQVRVKLMEERARIYAK
Ga0209253_1108292623300027900Freshwater Lake SedimentITPQGVPTDSPLSAEARHKLKETIYNDIHDLQVRIKLMEERNKK
Ga0119944_103664323300029930AquaticSKIPILITEDGVPTDSPISAARRQDMKDDIMEDIHDLQVRVKLMEERNK
Ga0119945_101999723300029933AquaticLIAIESKIPILITEDGVPTDSPISAARRQDMKDDIMEDIHDLQVRVKLMEERNK
Ga0315899_1007362313300031784FreshwaterITEDGVPTDSPLSAAKRQELKDDLMEDIHDLQVRVKLMEERNK
Ga0315908_1087225713300031786FreshwaterVPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERNK
Ga0315900_1011077713300031787FreshwaterDGVPTDSPLSAAKRQELKDDLMEDIHDLQVRVKLMEERNK
Ga0315900_1053881233300031787FreshwaterPILITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0315900_1080723123300031787FreshwaterTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0315900_1095184023300031787FreshwaterNRLIAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0315909_1092771123300031857FreshwaterEIASFNNRLIAIESKIPILITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERGK
Ga0315904_1066588013300031951FreshwaterPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERGK
Ga0315904_1083942433300031951FreshwaterLITEDGVPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERNK
Ga0315904_1134672813300031951FreshwaterVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0315901_1024223913300031963FreshwaterIPLLITEDGVPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERNK
Ga0315901_1036212613300031963FreshwaterGVPTDSPLSAAKRQELKDDLMEDIHDLQVRVKLMEERNK
Ga0315901_1051236713300031963FreshwaterITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERSK
Ga0315906_1080633333300032050FreshwaterSKIPILITEDGVPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERGK
Ga0315902_1003524213300032093FreshwaterILITEDGVPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERNK
Ga0315902_1114403223300032093FreshwaterPTDSPVSAERRHKMKEEIYTDIHDLQVRVKLIEERNK
Ga0315903_1028619943300032116FreshwaterNRLIAIESKVPILITEDGVPTDSPLSAAKRQELKDDLMEDIHDLQVRVKLMEERNK
Ga0315903_1063052313300032116FreshwaterIAIESKIPILITEDGVPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERGK
Ga0315903_1103131013300032116FreshwaterWLLGEITSFQNRLIALESKMPILITNEGVIIDSPQSAAARQEMKDDLMHDIHDLQVRVKLMEERSK
Ga0334979_0156150_1226_13693300033996FreshwaterMPILITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0334985_0455322_549_7493300034018FreshwaterWLLTEIASFNNRLMSVESKMPALITPEGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERSK
Ga0334995_0566471_547_6663300034062FreshwaterGVPTDSPLSAARRQEMKDDIMEDIHDLQVRVKLMEERQK
Ga0335000_0712601_2_1483300034063FreshwaterKIPILITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0335012_0249478_784_9183300034093FreshwaterLITPEGVPTDSPLSAARRQEMKDDIMEDIHDLQVRVKLMEERSK
Ga0335031_0374291_737_9013300034104FreshwaterLIAIESKIPILITEDGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLIEERNK
Ga0335068_0442821_433_6123300034116FreshwaterSFNNRLIAIESKVPILITEDGVPTDSPLSASKRQELKDEIMEDIHDLQVRVKLMEERNK
Ga0335058_0262728_17_1513300034121FreshwaterLITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0335017_0326032_653_8473300034167FreshwaterLAEIASFNNRLIAIESKMPILITEDGVPTDSPLSASRRQELKDDIMEDIHDLQVRVKLMEERNK
Ga0335048_0497971_3_1973300034356FreshwaterLTEIASFNNRLMSVESKMPALITPEGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERSK


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