Metagenome / Metatranscriptome Family F093462

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F093462
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	67 residues
Representative Sequence	MRLRRWILSVVLALPFGLPGVGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEAAQIARIYGMR
Number of Associated Samples	85
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.17 %
% of genes near scaffold ends (potentially truncated)	99.06 %
% of genes from short scaffolds (< 2000 bps)	95.28 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (79.245 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.924 % of family members)
Environment Ontology (ENVO)	Unclassified (28.302 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.660 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 62.24% β-sheet: 0.00% Coil/Unstructured: 37.76%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00069	Pkinase	4.72
PF13360	PQQ_2	3.77
PF04879	Molybdop_Fe4S4	2.83
PF08450	SGL	2.83
PF01436	NHL	1.89
PF01979	Amidohydro_1	1.89
PF00561	Abhydrolase_1	1.89
PF01039	Carboxyl_trans	0.94
PF09948	DUF2182	0.94
PF12697	Abhydrolase_6	0.94
PF00781	DAGK_cat	0.94
PF08974	DUF1877	0.94
PF10162	G8	0.94
PF07676	PD40	0.94
PF12543	DUF3738	0.94
PF08327	AHSA1	0.94
PF13620	CarboxypepD_reg	0.94
PF02276	CytoC_RC	0.94
PF07859	Abhydrolase_3	0.94
PF12680	SnoaL_2	0.94
PF13630	SdpI	0.94
PF04075	F420H2_quin_red	0.94
PF00196	GerE	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	18.87
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	2.83
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	2.83
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	1.89
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.94
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	0.94
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	0.94
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.25 %
Unclassified	root	N/A	20.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.25 %
Unclassified	root	N/A	20.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.25 %
Unclassified	root	N/A	20.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	49.06 %
Unclassified	root	N/A	20.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.60 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.32 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.83 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.94 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.94 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.32 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.94 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.94 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.94 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.94 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.32 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples	0.94 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.94 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.94 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.94 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.32 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.94 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.94 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.94 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.94 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.32 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.94 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.94 %
Mesorhizobium amorphae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae	0.94 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.94 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.32 %
Mesorhizobium amorphae CCNWGS0123	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCNWGS0123	0.94 %
Sorangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium	0.94 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.94 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.94 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.32 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	0.94 %
Mesorhizobium amorphae CCNWGS0123	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCNWGS0123	0.94 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.94 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.94 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.32 %
Sorangium cellulosum So0157-2	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum → Sorangium cellulosum So0157-2	0.94 %
Mesorhizobium amorphae CCNWGS0123	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCNWGS0123	0.94 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.94 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.94 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.94 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c1761501	Not Available	545	Open in IMG/M
3300004156\|Ga0062589_102847742	Not Available	505	Open in IMG/M
3300004157\|Ga0062590_102903214	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300004463\|Ga0063356_102539860	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300004463\|Ga0063356_103828672	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300004480\|Ga0062592_100474016	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300004643\|Ga0062591_102691236	Not Available	526	Open in IMG/M
3300004800\|Ga0058861_11488264	Not Available	609	Open in IMG/M
3300005093\|Ga0062594_101419173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300005093\|Ga0062594_101605577	Not Available	674	Open in IMG/M
3300005441\|Ga0070700_101508541	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300005471\|Ga0070698_100592336	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300005471\|Ga0070698_100920958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	820	Open in IMG/M
3300005530\|Ga0070679_101453158	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300005533\|Ga0070734_10647662	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300005535\|Ga0070684_101974187	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300005617\|Ga0068859_101218354	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	829	Open in IMG/M
3300005617\|Ga0068859_101996095	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300005713\|Ga0066905_100166931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	1607	Open in IMG/M
3300005764\|Ga0066903_102539390	All Organisms → cellular organisms → Bacteria → Acidobacteria	992	Open in IMG/M
3300005764\|Ga0066903_106797056	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300005764\|Ga0066903_107159911	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300005841\|Ga0068863_100489064	All Organisms → cellular organisms → Bacteria → Acidobacteria	1211	Open in IMG/M
3300005841\|Ga0068863_101085142	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300005841\|Ga0068863_101720442	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300006049\|Ga0075417_10241705	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300006058\|Ga0075432_10346931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCNWGS0123	628	Open in IMG/M
3300006059\|Ga0075017_101007283	All Organisms → cellular organisms → Bacteria → Acidobacteria	649	Open in IMG/M
3300006102\|Ga0075015_100427169	All Organisms → cellular organisms → Bacteria → Acidobacteria	752	Open in IMG/M
3300006844\|Ga0075428_100569353	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300006847\|Ga0075431_100236112	All Organisms → cellular organisms → Bacteria	1861	Open in IMG/M
3300006852\|Ga0075433_11906238	Not Available	510	Open in IMG/M
3300006853\|Ga0075420_101154785	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300006871\|Ga0075434_100082571	All Organisms → cellular organisms → Bacteria	3211	Open in IMG/M
3300006880\|Ga0075429_100361241	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum → Sorangium cellulosum So0157-2	1271	Open in IMG/M
3300006880\|Ga0075429_101271877	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300006969\|Ga0075419_10052485	All Organisms → cellular organisms → Bacteria → Proteobacteria	2565	Open in IMG/M
3300006969\|Ga0075419_10238728	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1212	Open in IMG/M
3300009094\|Ga0111539_12622641	Not Available	584	Open in IMG/M
3300009100\|Ga0075418_10316935	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1663	Open in IMG/M
3300009100\|Ga0075418_11100768	Not Available	860	Open in IMG/M
3300009100\|Ga0075418_11440613	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300009101\|Ga0105247_11653474	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300009156\|Ga0111538_10455804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1621	Open in IMG/M
3300010037\|Ga0126304_10223716	All Organisms → cellular organisms → Bacteria → Proteobacteria	1234	Open in IMG/M
3300010043\|Ga0126380_10579778	All Organisms → cellular organisms → Bacteria → Acidobacteria	879	Open in IMG/M
3300010046\|Ga0126384_10311166	All Organisms → cellular organisms → Bacteria → Acidobacteria	1299	Open in IMG/M
3300010358\|Ga0126370_10494879	All Organisms → cellular organisms → Bacteria → Acidobacteria	1031	Open in IMG/M
3300010358\|Ga0126370_12220837	Not Available	541	Open in IMG/M
3300010360\|Ga0126372_10333916	All Organisms → cellular organisms → Bacteria → Acidobacteria	1351	Open in IMG/M
3300010360\|Ga0126372_13324830	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300010361\|Ga0126378_11899195	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300010366\|Ga0126379_11800441	All Organisms → cellular organisms → Bacteria → Acidobacteria	716	Open in IMG/M
3300010373\|Ga0134128_10922075	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300010375\|Ga0105239_13648158	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300010397\|Ga0134124_10085228	All Organisms → cellular organisms → Bacteria → Acidobacteria	2724	Open in IMG/M
3300010403\|Ga0134123_10884310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	897	Open in IMG/M
3300011119\|Ga0105246_11278256	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300011429\|Ga0137455_1144125	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300012207\|Ga0137381_11553985	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300012469\|Ga0150984_104303809	Not Available	1391	Open in IMG/M
3300012498\|Ga0157345_1056258	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300012931\|Ga0153915_10841685	All Organisms → cellular organisms → Bacteria → Acidobacteria	1065	Open in IMG/M
3300013105\|Ga0157369_11053864	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300013307\|Ga0157372_12395810	Not Available	606	Open in IMG/M
3300014326\|Ga0157380_12175864	Not Available	618	Open in IMG/M
3300014501\|Ga0182024_12302529	Not Available	586	Open in IMG/M
3300015248\|Ga0180079_1025328	Not Available	769	Open in IMG/M
3300015371\|Ga0132258_11482102	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1714	Open in IMG/M
3300015371\|Ga0132258_12665688	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300015372\|Ga0132256_100600972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1215	Open in IMG/M
3300015372\|Ga0132256_101974181	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300015372\|Ga0132256_103793180	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300015373\|Ga0132257_100042308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5029	Open in IMG/M
3300015373\|Ga0132257_102313639	All Organisms → cellular organisms → Bacteria → Acidobacteria	696	Open in IMG/M
3300015373\|Ga0132257_102802806	All Organisms → cellular organisms → Bacteria → Acidobacteria	635	Open in IMG/M
3300016357\|Ga0182032_11230093	All Organisms → cellular organisms → Bacteria → Acidobacteria	645	Open in IMG/M
3300016387\|Ga0182040_11654812	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300019263\|Ga0184647_1075561	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300021560\|Ga0126371_11708443	All Organisms → cellular organisms → Bacteria → Acidobacteria	753	Open in IMG/M
3300025327\|Ga0209751_10755776	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	763	Open in IMG/M
3300025921\|Ga0207652_10162077	All Organisms → cellular organisms → Bacteria → Acidobacteria	2005	Open in IMG/M
3300025941\|Ga0207711_10763598	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	901	Open in IMG/M
3300025944\|Ga0207661_10174472	All Organisms → cellular organisms → Bacteria → Acidobacteria	1873	Open in IMG/M
3300025944\|Ga0207661_11919353	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300025945\|Ga0207679_11775166	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300026078\|Ga0207702_11838646	All Organisms → cellular organisms → Bacteria → Acidobacteria	597	Open in IMG/M
3300026142\|Ga0207698_12750365	Not Available	500	Open in IMG/M
3300027526\|Ga0209968_1057299	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300027765\|Ga0209073_10097573	Not Available	1033	Open in IMG/M
3300027886\|Ga0209486_11188875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300027903\|Ga0209488_10649640	All Organisms → cellular organisms → Bacteria → Acidobacteria	760	Open in IMG/M
3300027907\|Ga0207428_11292784	Not Available	506	Open in IMG/M
3300027909\|Ga0209382_10440356	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1445	Open in IMG/M
3300027909\|Ga0209382_12195585	Not Available	522	Open in IMG/M
3300028379\|Ga0268266_12076290	Not Available	541	Open in IMG/M
3300028812\|Ga0247825_11458892	Not Available	502	Open in IMG/M
3300028819\|Ga0307296_10407550	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300031231\|Ga0170824_104772069	Not Available	505	Open in IMG/M
3300031890\|Ga0306925_11547864	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300031908\|Ga0310900_11931934	Not Available	504	Open in IMG/M
3300031913\|Ga0310891_10106132	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300031947\|Ga0310909_11015306	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300032000\|Ga0310903_10221783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	896	Open in IMG/M
3300032075\|Ga0310890_11079529	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300032126\|Ga0307415_102258819	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.83%
Host-Associated	Host-Associated	47.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.17%
Plants	Host-Associated → Plants	46.23%
Aquatic	Environmental → Aquatic	5.66%
Human	Host-Associated → Human	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.13%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.09%
Sediment	Environmental → Aquatic → Sediment	3.77%
Freshwater	Environmental → Aquatic → Freshwater	1.89%
Digestive System	Host-Associated → Human → Digestive System	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.47%
Loam	Environmental → Terrestrial → Soil → Loam	12.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.38%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.72%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.94%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.94%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.83%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.94%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.94%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015248	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT530_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_17615011	3300000033	Soil	MRWRRWILWVVLALAFGVPGAGIAQVDDAPNLAGVIDIHAHAAPETSMLNFKRAFNAIEAAQ
Ga0062589_1028477421	3300004156	Soil	MRVRRWILWVVLALPFGLPGGGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEA
Ga0062590_1029032141	3300004157	Soil	MRWRRWILWVVLAFAFGVPSVGIAQVDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIEAAQIARIYGMRGIVLKEHYT
Ga0063356_1025398601	3300004463	Arabidopsis Thaliana Rhizosphere	MRLRRWIFWVVLAFAFGLPGVGIAQVDDAPSLAGVIDIHAHAAPETAMLNFKRAFDAIEAAQIARIYGMRGIVLKEH
Ga0063356_1038286721	3300004463	Arabidopsis Thaliana Rhizosphere	MRLRPWILWVVLALSLGVPGSGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFNAIEAAQIARIYGMRGIVLKEH
Ga0062592_1004740161	3300004480	Soil	MRLRIWMLSGVLASLFGLPGAAIAQVNDAPSLAGVIDIHAHVAPETTLLNFQRSLDAIQAAQIARIYGMR
Ga0062591_1026912361	3300004643	Soil	MRMRGWILWVVLALPFGLPGVGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDALEAAQIARISGMRGIVLKEH
Ga0058861_114882641	3300004800	Host-Associated	MKISKWTQRVALVSLLAWTAVGTAQVDDAPSLAGVIDIHAHVAPETSLLNFKRAWDAIEAAQIARIY
Ga0062594_1014191731	3300005093	Soil	MERAMRLRPWILWVVLAVPFGVPGVGVAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEA
Ga0062594_1016055772	3300005093	Soil	MRVRRWILWVVLALPFGLPGGGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEAAQIARIYGMRGIVL
Ga0070700_1015085411	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRLRNWILWVVLGLVFGVPAEGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEAAQIARIYG
Ga0070698_1005923362	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRLRIWMLSGVLASLFVLPGVPLAQVDNAPSLAGVIDLHAHVAPETALFNFQRSLDAIQA
Ga0070698_1009209581	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRLRHWILPVVLALPFGVPGGGVAQVDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIEAAQIARIYGMRGI
Ga0070679_1014531582	3300005530	Corn Rhizosphere	MKLRKQILCIVLLLLFGVTARGAAQVDDAPSLAGVIDIHAHVAPETSMQNFKRAFDALEAAQIAR
Ga0070734_106476622	3300005533	Surface Soil	VRMRRWVLLGVLMALPGLPGPGTAQVDDAPSLAGVIDIHAHVAPETSMLNFKRAWDAIEAAQIA
Ga0070684_1019741872	3300005535	Corn Rhizosphere	MRMRRWTLWGVLVSLAGLQGVGSAQVDDAPSLAGVIDIHAHVAPETSLLNYKRAYDAIEAAQIAHIYGMRGIVLKE
Ga0068859_1012183541	3300005617	Switchgrass Rhizosphere	MRIRRWTLWSVLVPLLGLPGVGTAQVDDAPSLAGVIDIHAHTAPETALLNYKRAFDAIEAAQIAR
Ga0068859_1019960951	3300005617	Switchgrass Rhizosphere	MRWRHWIVWVVLAWPLGLPGVGLAQVDDAPSLAGVIDIHAHAAPETAMMNFKRAFDALEAAQIARIYGMRG
Ga0066905_1001669313	3300005713	Tropical Forest Soil	MRMRRWILWVVLALPFGLPRVGIAQVDDAPSLAGVIDIHAHVAPETSMMNFKRAFDAIEAAQIAR
Ga0066903_1025393902	3300005764	Tropical Forest Soil	MRLRKQILCVVLVSLIGLAGLGTAQVDDAPSLAGVIDIHAHVAPETSMLNFKRAFDAI
Ga0066903_1067970561	3300005764	Tropical Forest Soil	MRLRKQILCVVLVSLFGLTGLGTAQVDDAPSLAGVIDIHAHVAPETSMLNFKRAFDAI
Ga0066903_1071599112	3300005764	Tropical Forest Soil	MRSRIWMLCGVLVSLLGLPGVGIAQVDDAPSLAGVIDIHAHVAPETSMLNFKRAFDAIEAAHIARIYGM
Ga0068863_1004890643	3300005841	Switchgrass Rhizosphere	MRMRRWTLAGVLVSLAGLPGVGIAQVDDAPNLAGVIDIHAHVAPETSLLNYKRAFDAIEA
Ga0068863_1010851422	3300005841	Switchgrass Rhizosphere	MRLRRWILWVVLAFAFGVPSVGIAQVDDAPSLAGVIDIHAHAAPETSLLNFKRAFDAIEAAQIARIYGMRGIVLKEH
Ga0068863_1017204422	3300005841	Switchgrass Rhizosphere	MRMRRWTLGWVLVSLLGLPGVGSAQVDDAPSLAGVIDIHAHTAPETALLNYKRAFDAIEAAQIAHIFGMRGIVLKEHNTET
Ga0075417_102417051	3300006049	Populus Rhizosphere	MRLRRWILWVVLALPFGLPGMGIAQIDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIEAAQIARIYGMRGIVLKEHYT
Ga0075432_103469311	3300006058	Populus Rhizosphere	MRLRRRILWVVLALPFGLPGMGIAQIDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIEAAQIARIYGM
Ga0075017_1010072832	3300006059	Watersheds	MRTRRWTLWGVLVSLAGLPGVGTAQVDDAPSLAGVIDIHAHVAPETSLLNYKRAFDAIEAAQIAHIYGMRGIVLK
Ga0075015_1004271691	3300006102	Watersheds	MRTRRWTLWGVLVSLAGLPGVGTAQVDDAPSLAGVIDIHAHVAPETSLLNYKRAFDAIEAAQIAHIYG
Ga0075428_1005693532	3300006844	Populus Rhizosphere	MERTMKLRPLILWVVLAVPLGVPGVGMAQLDDGPSLAGVIDIHAHAAPETAMLNFKR
Ga0075431_1002361123	3300006847	Populus Rhizosphere	MERTMKLRPLILWVVLAVPLGVPGVGIAQIDDAPSLAGVIDIHAHVAPETSMLNFKRAFDAIEAAQI
Ga0075433_119062382	3300006852	Populus Rhizosphere	MERAMRLRPWILWVVLAVPFGVPGVGVAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEAAQIARIYGMRGIVLKEH
Ga0075420_1011547851	3300006853	Populus Rhizosphere	MERTMRWRPWILWVVLALPLGVPRVGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDALEAAQI
Ga0075434_1000825711	3300006871	Populus Rhizosphere	MRLRKQILCVVLVLLFGLTGLGTAQVDDAPSLAGVIDIHAHVAPETSMLNFKRAFDAIEAAQIAHIYGMRG
Ga0075429_1003612412	3300006880	Populus Rhizosphere	MRLRRWMLWVVLVLPFGVPGVGSAQVDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIE
Ga0075429_1012718772	3300006880	Populus Rhizosphere	MRWRRWILWVVLALAFGVPGAGIAQVDDAPNLAGVIDIHAHAAPETSMLNFKRAFNAIEAAQIARIYGMRGIV
Ga0075419_100524851	3300006969	Populus Rhizosphere	MRLRRWILWVVLALPFGLPGMGIAQIDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIEAAQIARIYGM
Ga0075419_102387281	3300006969	Populus Rhizosphere	MRLRRWMLWVVLVLPFGVPVVGGAQVDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIEAAQIARIYGMRGIV
Ga0111539_126226411	3300009094	Populus Rhizosphere	MRVRRWILWVVLALPFGLPGGGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEAAQIARIYGM
Ga0075418_103169353	3300009100	Populus Rhizosphere	MRLQRWILWVALGLAFGVRGEGIAQVDDAPSLAGVIDIHAHAAPETAMLNFKRAFDALEAAQIARIYGMRGIVLKE
Ga0075418_111007682	3300009100	Populus Rhizosphere	MLWVVLVLPFGVPVVGGAQVDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIE
Ga0075418_114406131	3300009100	Populus Rhizosphere	MLWGVLASLFGLSGVGIAQVNDAPSLAGVIDLHAHVAPETTLLNFQRSLDAIQAAQIARIYGMR
Ga0105247_116534742	3300009101	Switchgrass Rhizosphere	MRRWTLGWVLVSLLGLPGVGSAQVDDAPSLAGVIDIHAHTAPETALLNYKRAFDAIEAAQIAHILGMRGIVLKEHN
Ga0111538_104558042	3300009156	Populus Rhizosphere	MERAMRLRPWILWVVLAVPFGVPGVGVAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEAVQIARIYGMRGIVLKEHTTET
Ga0126304_102237163	3300010037	Serpentine Soil	MERTMRVRRWIPWIVLAVSFGVHAVGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAF
Ga0126380_105797782	3300010043	Tropical Forest Soil	MRLRKQILCVVLVSLFGLTGLGTAQVDDAPSLAGVIDIHAHVAPETSMLNFKRAFDAIEAAHIARIYGMRGIVLKEHY
Ga0126384_103111662	3300010046	Tropical Forest Soil	MRLRKQILCVVLVSLSGLTGLGTAQVDDAPSLAGVIDIHAHVAPETSMLNFKRAFD
Ga0126370_104948791	3300010358	Tropical Forest Soil	MRLRKQILCAVLVSLFGLTRAGTAQVDDAPSLAGVIDIHAHVAPETSMQNFKRAFDALE
Ga0126370_122208372	3300010358	Tropical Forest Soil	MRRWQRWAVLFSLLGLPGLGTAQVDDAPSLAGVIDIHAHVAPETSLLNFKRAFDAIEAAQIARISGMRGIVLKEHNTE
Ga0126372_103339161	3300010360	Tropical Forest Soil	MRRWQRWAVLFSLLGLPGLGTAQVDDAPSLAGVIDIHAHVGPETSLLNFKRAYDAIEAAQIARIYGMRGIVLK
Ga0126372_133248302	3300010360	Tropical Forest Soil	MRLRKQILCIVLLSLFGLARPGTAQVDDAPSLAGVIDIHAHVAPETSMQNFKRAFDALEA
Ga0126378_118991951	3300010361	Tropical Forest Soil	MRRWQRWAVLFSLLGLPGLGTAQVDDAPSLAGVIDIHAHVAPETSLLNFKRAFDAIEAAQIARIAGMRGSVLKEHNTET
Ga0126379_118004412	3300010366	Tropical Forest Soil	MKEKERTMRLRKQILCVVLVSLSGLTGLGTAQVDDAPSLAGVIDIHAHVAPETSMLNFKRAF
Ga0134128_109220752	3300010373	Terrestrial Soil	MRKWTQCGVLILLAGLPGVGTAQVDDAPSLAGVIDIHAHVAPETALLNYKRAFDAIEAAQIAH
Ga0105239_136481581	3300010375	Corn Rhizosphere	MKMRRTLWGVLIMLASLPGVGTAQMDDAPSLAGVIDIHAHVAPETALLNYKRAFDAIEAAQIAHLSGMR
Ga0134124_100852284	3300010397	Terrestrial Soil	MRRWTLAGVLVSLAGLPGVGIAQVDDAPNLAGVIDIHAHVAPETSLLNYKRAFDGIEAAQIAHIYGMRG
Ga0134123_108843102	3300010403	Terrestrial Soil	MRWRHWIVWVVLAWPLGLPGVGLAQVDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIEA
Ga0105246_112782562	3300011119	Miscanthus Rhizosphere	MRRWTLWGVLVSLAGLPAVATAQVEDAPSLAGVIDIHAHVAPETALLNYKRAFDAIEAA
Ga0137455_11441251	3300011429	Soil	RRWILSVVLALPFGLPGVGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAI*
Ga0137381_115539852	3300012207	Vadose Zone Soil	MRLRKQILCVVLVSLFGLTGLGTAQVDDAPSLAGVIDIHAHVAPETSMMNFKRAFD
Ga0150984_1043038091	3300012469	Avena Fatua Rhizosphere	MVRLRRWIVRGVVGLLLGLPAVGVAQVDDAPSLAGVIDLHAHVAPETTLFNYRRSLDAIE
Ga0157345_10562581	3300012498	Arabidopsis Rhizosphere	MRWRHWIVWVVLAWPLGLPGVGLAQVDDAPSLAGVIDIHAHAAPETAMMNFKRAFDALEAAQIAR
Ga0153915_108416851	3300012931	Freshwater Wetlands	MGMLWGVLASLIGLPGLGIAQVDDAPSLAGIIDIHAHVGPETALLNYKRAFDAIEAAQIARIYG
Ga0157369_110538641	3300013105	Corn Rhizosphere	MRRWTLWGVLISLAGLPGVGTAQVDDAPSLAGVIDIHAHVAPETSLLNYKRAFD
Ga0157372_123958102	3300013307	Corn Rhizosphere	MRVRRWILWVVLALPFGLPGGGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEAVQIARIYGMRGIVLKEHTTET
Ga0157380_121758642	3300014326	Switchgrass Rhizosphere	MERAMRLRPWILWVVLAVPFGVPGVGVAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEAVQIA
Ga0182024_123025292	3300014501	Permafrost	MWMLSGVLVSLFGLPGVGIAQVNDAPSLEGVIDIHAHVAPESALFNFKRAFDAIEAAQIARIYGMRGIVLKV
Ga0180079_10253281	3300015248	Soil	MRLRRWILSVVLALPFGLPGVGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEAAQIARIYGMRG
Ga0132258_114821021	3300015371	Arabidopsis Rhizosphere	MRRRILWVVLALAFGSSGVGIAQVDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIEAAQ
Ga0132258_126656884	3300015371	Arabidopsis Rhizosphere	MRLRRWILWVVLAWPFAVPGVGFAQVDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIEAAQI
Ga0132256_1006009722	3300015372	Arabidopsis Rhizosphere	MRWRHWIVWVVLAGPFGLPGVGLAQVDDAPSLAGVIDIHAHAAPETAMMNFKRAFDALEAAQI
Ga0132256_1019741811	3300015372	Arabidopsis Rhizosphere	VPLALPFASPGVGIAQVDDAPSLAGVIDIHAHVAPETSMQNFKRAFDALEAAQIARIYGMRGIVLK
Ga0132256_1037931802	3300015372	Arabidopsis Rhizosphere	MRLRKQILCVVLVSLFGLAGMGTAQVDDAPSLAGVIDIHAHTAPETSILNFKRSYDAIEAAQIARIYGMRGIVL
Ga0132257_1000423081	3300015373	Arabidopsis Rhizosphere	MRLRRWILWVVLAWPFGVPGVGFAQVDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIEAAQI
Ga0132257_1023136391	3300015373	Arabidopsis Rhizosphere	MRLRKKILCVVLVSLFGLCGMGAAQVDDAPSLAGVIDIHAHTAPETSMLNFKRAFDAIEAAQ
Ga0132257_1028028061	3300015373	Arabidopsis Rhizosphere	MRLRKQILCVVLVSLFGLAGMGTAQVDDAPSLAGVIDIHAHVAPETSMLNFKRAFDAIEAAQIARIYGMRGIV
Ga0182032_112300931	3300016357	Soil	MRMRRWQLWGVLFSLLGLPGLGTAQVDASPSLAGVIDIHAHVAPETQLLNFKRAFDAIDAAQIARLSGMRG
Ga0182040_116548122	3300016387	Soil	MRLRKQILCVVLGSLFGVTGLGTAQVDDAPSIAGVIDIHAHIAPETSMMNFKRPFDAL
Ga0184647_10755611	3300019263	Groundwater Sediment	MRLRRWILSVVLALPFGLPGVGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEAAQIARIYGMR
Ga0126371_117084432	3300021560	Tropical Forest Soil	MRLRKQIPCVVLLLLLGLTGRGTAQVDDAPSLAGVIDIHAHVAPETSMQNFKRAFDALEAAQIARIYGMRGIVLKE
Ga0209751_107557761	3300025327	Soil	MRLRIWMLWGVLASLFGLPGVGIAQVNNAPSLAGVIDLHAHVAPETTLLNFRRSLDAIEAAQIARIYGM
Ga0207652_101620775	3300025921	Corn Rhizosphere	MRLRKQVLCVVLLLLFGVTARGAAQVDDAPSLAGVIDIHAHVAPETSMQNFKRAFDALEAAQIARIYGMRGIV
Ga0207711_107635982	3300025941	Switchgrass Rhizosphere	MRWRHWIVGVVLAWPLGLPGVGLAQVDDAPSLAGVIDIHAHAAPETAMMNFKRAFDALEAAQIARIYGMRGIVL
Ga0207661_101744725	3300025944	Corn Rhizosphere	MRMRRWTLAGVLVSLAGLPGVGIAQVDDAPNLAGVIDIHAHVAPETSLLNYKRAFDGIEAAQIAHIYGMRGI
Ga0207661_119193532	3300025944	Corn Rhizosphere	MRMRRRTLGWVLISLAGLHGVGTAQVDDAPSLAGVIDIHAHVAPETSLLNYKRAFDAIEA
Ga0207679_117751661	3300025945	Corn Rhizosphere	MRWRRWILWVVLAFAFGVPSVGIAQVDDAPSLAGVIDIHAHAAPETSLLNFKRAFDAIEAAQIARIYGM
Ga0207702_118386462	3300026078	Corn Rhizosphere	MGMRRWTLCAILVSLAGLPGVITAQVDDAPSLAGVIDIHAHVAPETSLLNYKRAFDAIEAAQIA
Ga0207698_127503651	3300026142	Corn Rhizosphere	MRLRIWMLSGVLASLFVLPGVPLAQVDNAPSLAGVIDLHAHVAPETALFNFQRSLDAIQAAQIARIYGMRG
Ga0209968_10572991	3300027526	Arabidopsis Thaliana Rhizosphere	MRLRRWIFWVVLAFAFGLPGVGIAQVDDAPSLAGVIDIHAHAAPETAMLNFKRAFDAIEAAQI
Ga0209073_100975732	3300027765	Agricultural Soil	MRLSARQRWDVLLLLLALPGLAIAQVDDTPSLAGVIDIHAHVAPETSMLNFKRAWDAVEA
Ga0209486_111888752	3300027886	Agricultural Soil	MRLRIWMLWGVLASLVGVPGLGIAQANEAPSLAGVIDLHAHVAPETKLLNFQRSLDAIEA
Ga0209488_106496402	3300027903	Vadose Zone Soil	LWGVLVPLLGLPGVGTAQVDDAPNLAGVIDIHAHTPPETSLLNYKRAFDAIEAAQIET
Ga0207428_112927842	3300027907	Populus Rhizosphere	MRLRIRTLCGVLALLFGVPGVGFAQVNDAPSLSGVIDLHAHVAPETTLLNYQRSLDAIEAAQIARIYGMRGLVFK
Ga0209382_104403562	3300027909	Populus Rhizosphere	MRLRRWMLWVVLVLPFGVPVVGGAQVDDAPSLAGVIDIHAHVAPETAMMNFKRAFDAIEAAQIAR
Ga0209382_121955851	3300027909	Populus Rhizosphere	MRWRRWILWVVLALAFGVPGAGIAQVDDAPNLAGVIDIHAHAAPETSMLNFKRAFNAI
Ga0268266_120762901	3300028379	Switchgrass Rhizosphere	MRVRTWIKRSVLLSLFTLPSLVTGQVSDAPSLAGVIDLHAHVAPETSLLNYRRSLDAIEAAQIARIYGMRGMVFKEH
Ga0247825_114588922	3300028812	Soil	MRVRRWILWVVLALPFGLPGGGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIEAAQIARIY
Ga0307296_104075501	3300028819	Soil	MRLRIWMLSGVLASLFGLPGVAIAQVNDAPSLAGVIDLHAHVAPETTLLNFQRSLDAIQAAQIARIYGMRGLV
Ga0170824_1047720692	3300031231	Forest Soil	MRMRRWTLWGVLVSFAGLPGVGTAQVDDAPSLAGVIDIHAHVAPETSILNFKRAFDAIEAAQIARIYGMRGIVLKEHTTE
Ga0306925_115478642	3300031890	Soil	MKMRPWQLWAGLFSLLGLPGLGTAQVDDAPSLAGVIDIHAHVAPETSLLNFKRAFDA
Ga0310900_119319342	3300031908	Soil	MRLRRSILWIVLASLFGLPGVGIAQIDDAPSLEGVIDIHAHVAPETSLLNFKRAFDAIEAAQIARIYGMR
Ga0310891_101061322	3300031913	Soil	MRLRRWILWVVLAFAFGVPSVGIAQVDDAPSLAGVIDIHAHAAPETSMLNFKRAFDAIE
Ga0310909_110153061	3300031947	Soil	MRLQKQILCVVLGSLFGVTGLGTAQVDDAPSLAGVIDIHAHIAPETSMMNFKRAFDAIEAAQIARIYGMRGIVLKEHY
Ga0310903_102217832	3300032000	Soil	MKLRIWTLCGVVALLFGVPGVGIAQVNDAPSLAGVIDLHAHVAPETTLLNYQRSLDAIEAAQIARIYGMRGLV
Ga0310890_110795292	3300032075	Soil	MRLRRWILWGVIGLPFVVPSDGIAQVDDAPSLAGVIDIHAHAAPETAMLNFKRAFDAIEAAQIARIYG
Ga0307415_1022588191	3300032126	Rhizosphere	MRLRIRLLHGVLVSLLGLPAVAIAQVDDAPSLAGVIDLHAHVAPETTLLNYRRSLDAIEAAQIA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093462

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences