Metagenome / Metatranscriptome Family F093460

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093460
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	72 residues
Representative Sequence	MHVGEDGRSVSLNVRFWFESDGSIRLTSEADPSLRVIIKNDPERPLGHPTLFKRLAQCLRIMGVPSPTA
Number of Associated Samples	80
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	51.89 %
% of genes near scaffold ends (potentially truncated)	30.19 %
% of genes from short scaffolds (< 2000 bps)	86.79 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.811 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.924 % of family members)
Environment Ontology (ENVO)	Unclassified (28.302 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.453 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.40% β-sheet: 16.49% Coil/Unstructured: 70.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF06240	COXG	9.43
PF01494	FAD_binding_3	7.55
PF13302	Acetyltransf_3	2.83
PF06629	MipA	2.83
PF00950	ABC-3	2.83
PF07729	FCD	1.89
PF05787	DUF839	1.89
PF00941	FAD_binding_5	0.94
PF00202	Aminotran_3	0.94
PF12850	Metallophos_2	0.94
PF00082	Peptidase_S8	0.94
PF07676	PD40	0.94
PF04909	Amidohydro_2	0.94
PF00664	ABC_membrane	0.94
PF00872	Transposase_mut	0.94
PF14559	TPR_19	0.94
PF07811	TadE	0.94
PF00353	HemolysinCabind	0.94
PF12695	Abhydrolase_5	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	15.09
COG3427	Carbon monoxide dehydrogenase subunit CoxG	Energy production and conversion [C]	9.43
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	7.55
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	7.55
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	7.55
COG0609	ABC-type Fe3+-siderophore transport system, permease component	Inorganic ion transport and metabolism [P]	2.83
COG1108	ABC-type Mn2+/Zn2+ transport system, permease component	Inorganic ion transport and metabolism [P]	2.83
COG3713	Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family	Cell wall/membrane/envelope biogenesis [M]	2.83
COG4606	ABC-type enterochelin transport system, permease component	Inorganic ion transport and metabolism [P]	2.83
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	1.89
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	1.89
COG3211	Secreted phosphatase, PhoX family	General function prediction only [R]	1.89
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.81 %
Unclassified	root	N/A	30.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.81 %
Unclassified	root	N/A	30.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.81 %
Unclassified	root	N/A	30.19 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.49 %
Unclassified	root	N/A	30.19 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.45 %
Unclassified	root	N/A	30.19 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.26 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.83 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	2.83 %
Maricaulales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Alphaproteobacteria bacterium 65-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	3.77 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.83 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.89 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.94 %
Maricaulaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Alphaproteobacteria bacterium 65-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	3.77 %
unclassified Caulobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.83 %
Maricaulis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis	0.94 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.94 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.19 %
Alphaproteobacteria bacterium 65-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	3.77 %
Caulobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	2.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.83 %
Maricaulis salignorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → Maricaulis salignorans	0.94 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.94 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_507_length_1179_cov_7.434266	Not Available	1211	Open in IMG/M
2170459019\|G14TP7Y02HON72	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300003324\|soilH2_10307748	All Organisms → cellular organisms → Bacteria → Proteobacteria	2459	Open in IMG/M
3300003993\|Ga0055468_10037834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1169	Open in IMG/M
3300003993\|Ga0055468_10068517	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300004114\|Ga0062593_100609390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1043	Open in IMG/M
3300004145\|Ga0055489_10072725	All Organisms → cellular organisms → Bacteria → Proteobacteria	959	Open in IMG/M
3300004463\|Ga0063356_100739685	All Organisms → cellular organisms → Bacteria → Proteobacteria	1360	Open in IMG/M
3300004463\|Ga0063356_100913796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	1241	Open in IMG/M
3300004463\|Ga0063356_101044127	All Organisms → cellular organisms → Bacteria → Proteobacteria	1171	Open in IMG/M
3300005093\|Ga0062594_100277027	Not Available	1253	Open in IMG/M
3300005294\|Ga0065705_10399440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	885	Open in IMG/M
3300005332\|Ga0066388_103971895	Not Available	754	Open in IMG/M
3300005340\|Ga0070689_100476956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1065	Open in IMG/M
3300005364\|Ga0070673_101104833	Not Available	741	Open in IMG/M
3300005440\|Ga0070705_100587731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	859	Open in IMG/M
3300005764\|Ga0066903_103401239	All Organisms → cellular organisms → Bacteria → Proteobacteria	859	Open in IMG/M
3300006844\|Ga0075428_100882473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	949	Open in IMG/M
3300006845\|Ga0075421_100077690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4188	Open in IMG/M
3300006845\|Ga0075421_101567580	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300006845\|Ga0075421_101588207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300006846\|Ga0075430_100092731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2525	Open in IMG/M
3300006846\|Ga0075430_100312666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1299	Open in IMG/M
3300006846\|Ga0075430_100800853	All Organisms → cellular organisms → Bacteria → Proteobacteria	776	Open in IMG/M
3300006846\|Ga0075430_101368210	Not Available	582	Open in IMG/M
3300006847\|Ga0075431_101594988	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300006853\|Ga0075420_100288778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1423	Open in IMG/M
3300006853\|Ga0075420_100400441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1187	Open in IMG/M
3300006853\|Ga0075420_101160072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	664	Open in IMG/M
3300006865\|Ga0073934_10086548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2454	Open in IMG/M
3300006865\|Ga0073934_10140053	Not Available	1744	Open in IMG/M
3300007004\|Ga0079218_11457485	Not Available	737	Open in IMG/M
3300007255\|Ga0099791_10313320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	749	Open in IMG/M
3300009087\|Ga0105107_11104520	Not Available	553	Open in IMG/M
3300009094\|Ga0111539_11139156	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	906	Open in IMG/M
3300009100\|Ga0075418_10123635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2749	Open in IMG/M
3300009156\|Ga0111538_10197884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	2549	Open in IMG/M
3300009156\|Ga0111538_12730633	Not Available	619	Open in IMG/M
3300009609\|Ga0105347_1030400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1883	Open in IMG/M
3300009609\|Ga0105347_1036504	All Organisms → cellular organisms → Bacteria → Proteobacteria	1731	Open in IMG/M
3300009678\|Ga0105252_10035324	Not Available	1846	Open in IMG/M
3300010043\|Ga0126380_11368295	Not Available	620	Open in IMG/M
3300010360\|Ga0126372_10663827	Not Available	1011	Open in IMG/M
3300010399\|Ga0134127_11022790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	887	Open in IMG/M
3300010399\|Ga0134127_13664576	Not Available	504	Open in IMG/M
3300010400\|Ga0134122_10001950	All Organisms → cellular organisms → Bacteria	15041	Open in IMG/M
3300010403\|Ga0134123_10415936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	1238	Open in IMG/M
3300011414\|Ga0137442_1089631	Not Available	664	Open in IMG/M
3300011425\|Ga0137441_1153570	Not Available	573	Open in IMG/M
3300011430\|Ga0137423_1024782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1846	Open in IMG/M
3300011430\|Ga0137423_1057145	All Organisms → cellular organisms → Bacteria → Proteobacteria	1160	Open in IMG/M
3300011432\|Ga0137428_1250636	Not Available	523	Open in IMG/M
3300011433\|Ga0137443_1142663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	706	Open in IMG/M
3300011437\|Ga0137429_1013852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2293	Open in IMG/M
3300011441\|Ga0137452_1109901	Not Available	912	Open in IMG/M
3300011445\|Ga0137427_10183388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	868	Open in IMG/M
3300012041\|Ga0137430_1116778	Not Available	760	Open in IMG/M
3300012172\|Ga0137320_1118668	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300012200\|Ga0137382_11063746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	579	Open in IMG/M
3300012361\|Ga0137360_10006328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → Maricaulis salignorans	7297	Open in IMG/M
3300012668\|Ga0157216_10207942	Not Available	925	Open in IMG/M
3300012685\|Ga0137397_11074351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	588	Open in IMG/M
3300012922\|Ga0137394_11269364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	599	Open in IMG/M
3300012930\|Ga0137407_12401479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → unclassified Caulobacteraceae → Caulobacteraceae bacterium	504	Open in IMG/M
3300012948\|Ga0126375_11567743	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300012971\|Ga0126369_10446981	Not Available	1341	Open in IMG/M
3300014326\|Ga0157380_12971319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300014874\|Ga0180084_1079972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	674	Open in IMG/M
3300014883\|Ga0180086_1115220	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300014883\|Ga0180086_1204753	Not Available	511	Open in IMG/M
3300015251\|Ga0180070_1041511	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300018063\|Ga0184637_10241011	All Organisms → cellular organisms → Bacteria → Proteobacteria	1103	Open in IMG/M
3300018063\|Ga0184637_10758872	All Organisms → cellular organisms → Bacteria → Proteobacteria	522	Open in IMG/M
3300018079\|Ga0184627_10136866	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300018083\|Ga0184628_10001049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13932	Open in IMG/M
3300018083\|Ga0184628_10053831	All Organisms → cellular organisms → Bacteria	2034	Open in IMG/M
3300018084\|Ga0184629_10087103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1506	Open in IMG/M
3300018084\|Ga0184629_10163264	Not Available	1136	Open in IMG/M
3300018422\|Ga0190265_10130984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2416	Open in IMG/M
3300018422\|Ga0190265_10658990	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300018429\|Ga0190272_10517449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1019	Open in IMG/M
3300018466\|Ga0190268_10432188	Not Available	862	Open in IMG/M
3300018469\|Ga0190270_10442543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1219	Open in IMG/M
3300018476\|Ga0190274_12263340	Not Available	640	Open in IMG/M
3300018920\|Ga0190273_11617765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	579	Open in IMG/M
3300019377\|Ga0190264_10247083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1031	Open in IMG/M
3300019377\|Ga0190264_10580525	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300019377\|Ga0190264_10883011	Not Available	695	Open in IMG/M
3300019377\|Ga0190264_11048707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	658	Open in IMG/M
3300020027\|Ga0193752_1004048	All Organisms → cellular organisms → Bacteria → Proteobacteria	9700	Open in IMG/M
3300020027\|Ga0193752_1194552	Not Available	773	Open in IMG/M
3300025310\|Ga0209172_10098436	Not Available	1683	Open in IMG/M
3300025936\|Ga0207670_11885249	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300026285\|Ga0209438_1193465	Not Available	540	Open in IMG/M
3300026320\|Ga0209131_1171208	Not Available	1065	Open in IMG/M
3300027573\|Ga0208454_1114285	All Organisms → cellular organisms → Bacteria → Proteobacteria	632	Open in IMG/M
3300027840\|Ga0209683_10046791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1887	Open in IMG/M
3300027909\|Ga0209382_10163975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2567	Open in IMG/M
3300027909\|Ga0209382_11343409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	722	Open in IMG/M
3300027909\|Ga0209382_11704306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300031740\|Ga0307468_100066841	Not Available	1974	Open in IMG/M
3300032126\|Ga0307415_100765424	Not Available	878	Open in IMG/M
3300032180\|Ga0307471_101796795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	765	Open in IMG/M
3300034257\|Ga0370495_0239706	Not Available	591	Open in IMG/M
3300034354\|Ga0364943_0057139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	1301	Open in IMG/M
3300034675\|Ga0314800_055454	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.47%
Host-Associated	Host-Associated	23.58%
Engineered	Engineered	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	43.40%
Aquatic	Environmental → Aquatic	32.08%
Plants	Host-Associated → Plants	23.58%
Solid Waste	Engineered → Solid Waste	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.45%
Sediment	Environmental → Aquatic → Sediment	24.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.75%
Marine	Environmental → Aquatic → Marine	2.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.83%
Freshwater	Environmental → Aquatic → Freshwater	1.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.94%
Grass	Engineered → Solid Waste → Grass	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	24.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.81%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.83%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	2.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%
Composting	Engineered → Solid Waste → Grass → Composting	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	24.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	2.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	17.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.26%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.66%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.77%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.83%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	2.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.94%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.94%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300011425	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT244_2	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012172	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014874	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_2_16_10D	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300015251	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_10D	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M
3300034675	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_00007710	2140918013	Soil	MEVGEDGRSVSLNVRVWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKRLAHVLRSMGVP
4MG_01272850	2170459019	Switchgrass, Maize And Mischanthus Litter	SDSWFGGKTMEVGEDGRSVSLNVRVWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKRLARVLRSMGVPSPAG
soilH2_103077484	3300003324	Sugarcane Root And Bulk Soil	MTGEVGDKTMQVGEDGRSVSLNVRFWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALLGRLAQVLRSMGVPAPRT*
Ga0055468_100378342	3300003993	Natural And Restored Wetlands	VVVDSGVGGKAMQVGEDGRSVSLNVRVWLESDGSIRLSSEAEPSLRVIIKNDPERPLGHPALFKRLAYVLRSMGVPSPKA*
Ga0055468_100685171	3300003993	Natural And Restored Wetlands	LGSDGRFGGKAMHVSEDGRSVSLNVRVWLESDGSIRLTSEAEPSLRVIIKNDPERPLGHPTLFKRLAHVLRSMGVPSP*
Ga0062593_1006093902	3300004114	Soil	MQMSEDGRSVRLNVEFRFESDGSIRLTSEADPSLRVIIKNDPERPSGHPMLFKRLAQCLRIMGVPEPTA*
Ga0055489_100727252	3300004145	Natural And Restored Wetlands	MQVSEDGRSVRLNVEFRFESDGSIRLTSEADPTLRVVIKNDPERPSGHPMLFKRLAQCLRIMGVPEPTA*
Ga0063356_1007396852	3300004463	Arabidopsis Thaliana Rhizosphere	MQMGEDGRSVSLNVRFWFESDGSIRLTSEADPSLRVIIKNDPERPLGHPTLFKRLAQCLHIMGVPPPAA*
Ga0063356_1009137962	3300004463	Arabidopsis Thaliana Rhizosphere	MQVAEDGRSVSLNVRFWFESDGSIRLTSEAEPSLRVIIKNDPDRPLGHPTLFKRLANVLRTMGVPSPSAPGSSRDLLQERQG*
Ga0063356_1010441272	3300004463	Arabidopsis Thaliana Rhizosphere	MPTWDSRGRTMQVSDDGRSVSLNVKFWFENDGSIRLTSEADPALRIIIKNDPERPSGHPMLFRRLAQCLRI
Ga0062594_1002770271	3300005093	Soil	MEVGEDGRSVSLNVRVWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKRLAHVLRSM
Ga0065705_103994402	3300005294	Switchgrass Rhizosphere	MIKERGKTMQVGEDGRSVSLNVRVWLESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKRLAQVLRTMGVPSPLV*
Ga0066388_1039718952	3300005332	Tropical Forest Soil	MEVAEDGKSVNLHVVVRYESDGSIRLSSPVDPTLRVTIKNDPERPSGHPTLFKGLAQYLRTLGVPAPSV*
Ga0070689_1004769561	3300005340	Switchgrass Rhizosphere	MEVGEDGRSVSLNVRVWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKRLAHVLRSMGVPSPAG*
Ga0070673_1011048332	3300005364	Switchgrass Rhizosphere	MQMSEDGRSVRLNVEFRFESDGSIRLTSEADPSLRVIIKNDPERPSGHPMLFKRLAQCLRIMG
Ga0070705_1005877311	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MIDDVRGKTMEVGEDGRSVSLNVRFWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKRLAQCLRTMGVPAPRP*
Ga0066903_1034012392	3300005764	Tropical Forest Soil	MEVAEDGKSVNLHVVVRYESDGSIRLSSPVDPTLRVTIKNDPERPSGHPTLFKGLAHYLRTLGVPAPSV*
Ga0075428_1008824731	3300006844	Populus Rhizosphere	MTNDVRGKTMEVGEDGRSVSLNVRFWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKRLAQCLRTMGVPAPRP*
Ga0075421_1000776903	3300006845	Populus Rhizosphere	MQVGEDGRSVSLNVKFWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPTLFKRLAQCLRNMGVPAPMP*
Ga0075421_1015675801	3300006845	Populus Rhizosphere	MQVSEDGRSVRLNVEFWFESDGSIRLTSESDPTLRVVIKNDPERPSGHPTLFKRLAQCLRVMGVPEPT
Ga0075421_1015882072	3300006845	Populus Rhizosphere	MMDDVRGKTMEVGEDGRSVSLNVRFWFESDGSIRMTSEAEPSLRVIIKNDPERPLGHPALFKRLAQCLRNMGVPAPTP*
Ga0075430_1000927311	3300006846	Populus Rhizosphere	MAGQTGGKTMQVAEDGRSVSLNVKFWFENDGSIRLTSEAEPLLRVIIKNDPERPLGHPALFRRLADVLRTMGVPSPRV*
Ga0075430_1003126662	3300006846	Populus Rhizosphere	VTWAMMDDVRGKTMEVGEDGRSVSLNVRFWFESDGSIRMTSEAEPSLRVIIKNDPERPLGHPALFKRLAQCLRNMGVPAPTP*
Ga0075430_1008008532	3300006846	Populus Rhizosphere	MQVSEDGRSVRLNVEFWFESDGSIRLTSESDPTLRVVIKNDPERPSGHPTLFKRLAQCLRVMGVPEPTT*
Ga0075430_1013682102	3300006846	Populus Rhizosphere	MQVGEDGRSVSLNVRVWLESDGSIRLTSEAEPSLRVIIKNDPDRPLGHPTLFKRWAHVLRSMGVPSPQG*
Ga0075431_1015949882	3300006847	Populus Rhizosphere	MQVSEDGRSVRLNVEFWFESDGSIRLTSESDPTLRVVIKNDPERPSGHPTLFKRLAQCLRVMGVPEPTA*
Ga0075420_1002887782	3300006853	Populus Rhizosphere	MMDDVRGKTMEVGEDGRSVSLNVRFWFESDGSIRMTSEAEPSLRVIIKNDPERPLGHPALFKRLAQCLRTMGVPAPRL*
Ga0075420_1004004411	3300006853	Populus Rhizosphere	MTELGPIMQVGEDGRSVSLNVKFWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPTLFKRLAQCLRNMGVPAPMP*
Ga0075420_1011600722	3300006853	Populus Rhizosphere	MVWGSDRRLGGKTMQVGEDGRSVSLNVRVWLESDGSIRLTSEAEPSLRVIIKNDPDRPLGHPTLFKRLAHVLRSMGVPSPQG*
Ga0073934_100865483	3300006865	Hot Spring Sediment	MQVSEDGRSVSLKVKFWFESDGSIRLTSDADPSLRVVIKNDPQRPSGHPTLFKRLAQCLRVMGVPEPTA*
Ga0073934_101400533	3300006865	Hot Spring Sediment	MQVAEDGRSVKLNVKIWLESDGSIRLASEADPALRVIIKNDPDRPLGHPALFKRLARCLQVMGVPAPSA*
Ga0079218_114574852	3300007004	Agricultural Soil	LGSDRRLGGKTMQVGEDGRSVSLNVRVWLESDGSIRLTSEAEPSLRVIIKNDPDRPLGHPTLFKRLAHVLRSMGVPSPLG*
Ga0099791_103133203	3300007255	Vadose Zone Soil	VEVGEDGRSVNLNVKVWYESDGSIRLTSQVDPSLRVIIKNDPERPLGHPTLFKRLAMYLRESGVPAPT
Ga0105107_111045201	3300009087	Freshwater Sediment	MASVAWMTEIRGTTMQVSEDGRSVSLNVKFWFEEDGSIRLTSEADPSLRITIKNDPERPSGHPTLF
Ga0111539_111391563	3300009094	Populus Rhizosphere	MHVSEDGRSVSLNVKFWFESDGSIRMTSEADPALRVVIKNDPERPSGHPTLFKRLAQCLRVMGVPEPTA*
Ga0075418_101236354	3300009100	Populus Rhizosphere	MQVSEDGRSVRLNVEFWFESDGSIRLTSESDPTLRVVIKNDPERPSGHPTLFKRLAQCLRVAGVPEPTA*
Ga0111538_101978842	3300009156	Populus Rhizosphere	MTNDVRGKTMEVGEDGRSVSLNVRFWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKQLAQCLRTMGVPAPRP*
Ga0111538_127306332	3300009156	Populus Rhizosphere	MHVGKDGRSVTLEVKVWFESDGSIRLASDADPALRAIIKDDPERPLGHPTLFKRLAQCLRVMGVPAPAA*
Ga0105347_10304002	3300009609	Soil	VGEDGRSVSLNVRVWLESDGSIRLTSEAEPSLRVIIKNDPERPLGHPTLFKRLAHVLRSMGVPSPKA*
Ga0105347_10365041	3300009609	Soil	EDGRSVSLNVRFWFESDGSIRLTSEADPSLRVIIKNDPERPLGHPTLFKRLAQCLRIMGVPSPTA*
Ga0105252_100353242	3300009678	Soil	MHVGEDGRSVSLNVRFWFESDGSIRLTSEADPSLRVIIKNDPERPLGHPTLFKRLAQCLRIMGVPSPTA*
Ga0126380_113682952	3300010043	Tropical Forest Soil	MEVAEDGRSVNLNVRVWYESDGSIRLTSPVDPRLHVTIKNDPERPSGHPTLFKRLGDCLRTMGVPAPTASSYPSKG*
Ga0126372_106638271	3300010360	Tropical Forest Soil	MEVAEDGKSVNLHVVVRYESDGSIRLSSPVDPTLRVTIKNDPERPSGHPTLFKGLAQYLRTL
Ga0134127_110227902	3300010399	Terrestrial Soil	WAMMDEVGGKAMHVGEDGRSVSLNVRFWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKRLAQCLRTMGVPAPRP*
Ga0134127_136645761	3300010399	Terrestrial Soil	MHVGEDGRSVSLNVRVWLESDGSIRLTSEAEPSLRVIIKNDPERPLGHPTLFKRLAQVLRSMGVPSPTA*
Ga0134122_100019506	3300010400	Terrestrial Soil	MVGDNMEVAEDGRSVNLHVTVWYENDGSIRLSSPVDPSLRVTIKNDPERPSGHPTLFKRLAQCLSTMGVPAPGSHPSNG*
Ga0134123_104159362	3300010403	Terrestrial Soil	MIDDVRGKTMEVGEDGRSVSLNVRFWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKRLAQCLRNMGVPAPRP*
Ga0137442_10896312	3300011414	Soil	MHVGEDGRSVSLNVRFWFESDGSIRLTSEADPSLRIIIKNDPERPLGHPALFKRLAQCLHIMGVPPPAQ*
Ga0137441_11535702	3300011425	Soil	MPVGEDGRSVSLNVKFWFESDGSIRLTSDAEPSLRIIIKNDPERPLGHPTLFKRLAQ
Ga0137423_10247822	3300011430	Soil	MQVGEDGRSVSLNVRVWLESDGSIRLTSEAEPSLRVIIKNDPERPLGHPTLFKRLAHVLRSMGVPSPKA*
Ga0137423_10571452	3300011430	Soil	VGNDKNRGSIMQVNEDGRSVSLNVQFWFESDGSIRLTSEADPSLRVIIKNDPERPSGHPTLFKRLAQCLRVMGVPEPTA*
Ga0137428_12506361	3300011432	Soil	MQVGEDGRSVSLNVRVWLESDGSIRLTSEAAPSLRVIIKNDPDRPLGHPTLFKRLAHVLRSMGVPSPKA*
Ga0137443_11426631	3300011433	Soil	MQVGEDGRSVSLNVKFWFESDGSIRLTSDAEPSLRIIIKNDPERPLGHPTLFKRLAQCLRNMGVPAPTP*
Ga0137429_10138522	3300011437	Soil	MPVGEDGRSVSLNVKFWFESDGSIRLTSDAEPSLRIIIKNDPERPLGHPTLFKRLAQCLRNMGVPAPTP*
Ga0137452_11099011	3300011441	Soil	MHVGEDGRSVSLNVRFWFESDGSIRLTSEADPSLRVIIKNDPERPLGHPTLFKRLAQCLRIMG
Ga0137427_101833881	3300011445	Soil	LYITERSAELGALREGRDGLGSDRRLGGKTMQVGEDGRSVSLNVRVWLESDGSIRLTSEAEPSLRVIIKNDPDRPLGHPTLFKRLAHVLRSMGVPSPKG*
Ga0137430_11167782	3300012041	Soil	WSGWPGNDEKNGGKTMHVGEDGRSVSLNVRFWFESDGSIRLTSEADPSLRVIIKNDPERPLGHPTLFKRLAQCLRIMGVPSPTA*
Ga0137320_11186682	3300012172	Soil	MQVSEDGRSVRLNVEFWFESDGSIRLTSESDPTLRVVIKNDPERPSGHPTLFKRLAQCLR
Ga0137382_110637462	3300012200	Vadose Zone Soil	MGAKMEVGEDGRSVNLNVRCWLEVDGSIRLMSETDPSLRVIIKNDPERPNGHPTLFKRLAQYLRDKGVPAPAS*
Ga0137360_100063287	3300012361	Vadose Zone Soil	MEVGEDGRSVNLNVRCWLEVDGSIRLMSENDPSLRAIIKNDPERPNGHPTLFKRLAQYLRDKGVPAPTS*
Ga0157216_102079422	3300012668	Glacier Forefield Soil	LGNDRETGGKTMHVAEDGRSVSLNVKFWLENDGSIRLTSEADPSLRVIIKNDPDRPLGHPALFKRLAKVLRIMGVPSPAA*
Ga0137397_110743511	3300012685	Vadose Zone Soil	MEVGEDGRSVNLNVRCWLEVDGSIRLMSENDPSLRAIIKNDPERPNGHPTLFKRLAQCLRDKGVPAPTS*
Ga0137394_112693641	3300012922	Vadose Zone Soil	MEVAEDGRSVNLHVTVWYESDGSIRLSSPVDPSLRVTIKNDPERPSGHPTLFKRLAQCLNTMGVPAPTGSHSSNG*
Ga0137407_124014791	3300012930	Vadose Zone Soil	KMEAGEDGRSVNLNVRCWLEVDGSIRLMSENDPSLRAIIKNDPERPNGHPTLFKRLAPCLRDKGVPAPAS*
Ga0126375_115677431	3300012948	Tropical Forest Soil	NLGLRAVREQWGKFMEVAEDGKSVNLHVVVRYESDGSIRLSSPVDPTLRVTIKNDPERPSGHPTLFKGLAHYLRTLGVPAPSV*
Ga0126369_104469812	3300012971	Tropical Forest Soil	MEVAEDGRSVNLHVVVRYESDGSIRLSSPVDPTLRVTIKNDPERPSGHPTLFKGLAQYLRSLGVPAPSV*
Ga0157380_129713192	3300014326	Switchgrass Rhizosphere	KTMEVGEDGRSVSLNVRVWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKRLAHVLRSMGVPSPAG*
Ga0180084_10799721	3300014874	Soil	MAPVAWMTAIRGTTMQVNEDGRSVSLNVKFWFEEDGSIRLTSEADPSLRITIKNDPERPSGHPTLFKRLAQCLRVMGVAEPTA*
Ga0180086_11152202	3300014883	Soil	MAPVAWMTAIRGTTMQVNEDGRSVSLNVKFWFEEDGSIRLTSEADPSLRITIKNDPERPSGHPTLFKRLAQCLRVMGVAEPTT*
Ga0180086_12047532	3300014883	Soil	MHVGEDGRSVSLNVRFWFESDGSIRLTSEADPSLRVIIKNDPERPLGHPALFKRLAQCLYIMGVPPPAA*
Ga0180070_10415112	3300015251	Soil	LNVKFWFEEDGSIRLTSEADPSLRITIKNDPERPSGHPTLFKRLAQCLRVMGVAEPTT*
Ga0184637_102410111	3300018063	Groundwater Sediment	MQVSEDGRSVSLHVRFWFESDGSIRLTSEADPSLRVTIKNDPERPLGHPTLFRRLAQCLQSMGVPAPMV
Ga0184637_107588721	3300018063	Groundwater Sediment	MTAVAWVMTEIGGKNMQVSEDGRSVSLNVKFWFESDGSIRLTSEADPSLRVIIKNDPERPSGHPTLFKRLAQCLRVMG
Ga0184627_101368662	3300018079	Groundwater Sediment	MTAVAWVMTEIGGKNMQVSEDGRSVSLNVKFWFESDGSIRLTSEADPSLRVIIKNDPERPSGHPTLFKRLAQCLRVMGVPEPTS
Ga0184628_100010491	3300018083	Groundwater Sediment	SDRSLGGKTMEVGEDGRSVSLNVRVWLESDGSIRLTSESEPSLRVIIKNDPERPLGHPTLFKRLAHVLRTMGVPSPTA
Ga0184628_100538311	3300018083	Groundwater Sediment	MQVSEDGRSVRLNVEFRFESDGSIRLTSEADPSLRVVIKNDPERPSGHPMLFKRLAQCLRIMGVAEPTA
Ga0184629_100871032	3300018084	Groundwater Sediment	MQVSEDGRSVRLNVEFWFESDGSIRLTSESDPTLRVVIKNDPERPSGHPTLFKRLAQCLRVMGVPEPTA
Ga0184629_101632641	3300018084	Groundwater Sediment	MHVGEDGRSVSLNVRFWFESDGSIRLTSEADPSLRVIIKNDPERPLGHPTLFKRLAQCLRIMGVPSPTA
Ga0190265_101309842	3300018422	Soil	MTETGGKTMQMSEDGRSVSLNVKFWFENDGSIRLTSEADPSLRITIKNDPERPSGHPTLFKRLAQCLRVMGVAEPTA
Ga0190265_106589902	3300018422	Soil	MQVAEDGRSVSLNVKFWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPTLFKRLAHVLRTMGVPSP
Ga0190272_105174492	3300018429	Soil	MQMSEDGRSVSLNVKFWFENDGSIRLTSEADPSLRITIKNDPERPSGHPTLFKRLAQCLRVMGVAEPTA
Ga0190268_104321881	3300018466	Soil	MQVGEDGRSVSLNVRVWLESDGSIRLTSEAEPSLRVIIKNDPERPLGHPTLFKRLAHVLRSMGVPSPSG
Ga0190270_104425432	3300018469	Soil	MQVGEDGRSVSLNVRVWLESDGSIRLTSEAEPSLRVIIKNDPERPLGHPTLFKRLAHVLRSMGVPSPQG
Ga0190274_122633402	3300018476	Soil	MQVAEDGRSVSLNVKFWFESDGSIRLTTEAEPSLRVIIKNDPDRPLGHPTLFKRLAKVLRTMGVPSPMA
Ga0190273_116177652	3300018920	Soil	MTEKTGGKTMQVADDGRSVSLNVKFWFESDGSIRLTSEAEPSLRVIIKDDPERPLGHPTLFKRLANVLRTMGVPSPMA
Ga0190264_102470832	3300019377	Soil	MQVAEDGRSVTLNVKFWFENDGSIRLTSEAEPALRVIIKNDPERPLGHPTLFKRLANVLRTMGVPSPTA
Ga0190264_105805252	3300019377	Soil	LMTDNQGQTMQVSDDGRSVSLSVKFWFENDGSIRLTSEADPDLRIIIKNDPERPSGHPMLFKRLAQCLRIMGVSEPTA
Ga0190264_108830111	3300019377	Soil	MQVAEDGRSVTLNVKFWFENDGSIRLTSEAEPSLRVIIKNDPERPLGHPTLFKRLANVLRTMGVPSPTA
Ga0190264_110487072	3300019377	Soil	MQVSDDRRSVSLNVKFWFENDGSIRLTSEADPALRIIIKNDPERPSGHPMLFKRLAQCLRIMGVSEPTE
Ga0193752_10040485	3300020027	Soil	MQVAEDGRSVSLNVKFWFESDGSIRLTSEAEPSLRVIIKDDPERPLGHPTLFKRLANVLRTMGVPSPRA
Ga0193752_11945522	3300020027	Soil	MQASEMPPTRDGRHFSLRVEFWFETDGSIRLTSKADPSLRIIIKNDPERPSGHPTLFKQLARYLHAFGVQAPD
Ga0209172_100984361	3300025310	Hot Spring Sediment	MQVSEDGRSVSLKVKFWFESDGSIRLTSDADPSLRVVIKNDPQRPSGHPTLFKRLAQCLRVMGVPEPTA
Ga0207670_118852491	3300025936	Switchgrass Rhizosphere	MEVGEDGRSVSLNVRVWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPALFKRLAHVLRSMGVPSPAG
Ga0209438_11934651	3300026285	Grasslands Soil	VEVGEDGRSVNLNVKVWYESDGSIRLTSQVDPSLRVIIKNDPERPLGHPTLFKRLAMYLRESGVPAPTNSINA
Ga0209131_11712081	3300026320	Grasslands Soil	RGQKMEVGEDGRSVNLNVRCWLEVDGSIRLMSENDPSLRAIIKNDPERPNGHPTLFKRLAQYLRDKGVPAPTS
Ga0208454_11142852	3300027573	Soil	MQVSEDGRSVRLNVEFWFESDGSIRLTSESDPTLRVVIKNDPERPSGHPTLFKRLAQCLRVM
Ga0209683_100467911	3300027840	Wetland Sediment	GNDREAGGKTMHVAEDGRSVSLNVKFWLENDGSIRMTSEADPSLRVIIKNDPDRPLGHPTLFKRLATVLRTMGVPSPKS
Ga0209382_101639752	3300027909	Populus Rhizosphere	MTELGPIMQVGEDGRSVSLNVKFWFESDGSIRLTSEAEPSLRVIIKNDPERPLGHPTLFKRLAQCLRNMGVPAPMP
Ga0209382_113434092	3300027909	Populus Rhizosphere	MMDDVRGKTMEVGEDGRSVSLNVRFWFESDGSIRMTSEAEPSLRVIIKNDPERPLGHPALFKRLAQCLRNMGVPAPTP
Ga0209382_117043061	3300027909	Populus Rhizosphere	PRGGAVTKPGQHMQVSEDGRSVRLNVEFWFESDGSIRLTSESDPTLRVVIKNDPERPSGHPTLFKRLAQCLRVMGVPEPTA
Ga0307468_1000668411	3300031740	Hardwood Forest Soil	IGGKKMEVAEDGRSVNLHVTVWYESDGSIRLSSPVDPSLRVIIKNDPERPSGHPTLFKRLAQCLSTMGVPAPTGSHPSNG
Ga0307415_1007654242	3300032126	Rhizosphere	MHIGKDGRSVTLEVKVWFESDGSIRLASDADPMLRAIIKDDPERPLGHPTLFKRLAQCLRVMGVPAPAA
Ga0307471_1017967951	3300032180	Hardwood Forest Soil	MQVSDDGRSVSLNVKFWFESDGSIRLTSDADPSLRVIIKNDPERPSGHPTLFKRLGECLRTLGVPAPTA
Ga0370495_0239706_235_444	3300034257	Untreated Peat Soil	MQVAEDGRSVSLNVKFWFESDGSIRLTTEAEPSLRVIIKNDPERPLGHPTLFKRLAKVLRTMGVPSPTT
Ga0364943_0057139_1113_1301	3300034354	Sediment	MPVGEDGRSVSLNVKFWFESDGSIRLTSDAEPSLRIIIKNDPERPLGHPTLFKRLAQCLRNMG
Ga0314800_055454_344_553	3300034675	Soil	MQVSEDGRSVRLNVEFWFESDGSIRLTSESDPSLRVIIKNDPERPSGHPMLFKRLAQCLRIMGVTEPTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093460

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences