NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F093459

Metagenome Family F093459

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093459
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 46 residues
Representative Sequence MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGL
Number of Associated Samples 87
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 15.09 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 89.62 %
Associated GOLD sequencing projects 77
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (82.075 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(17.924 % of family members)
Environment Ontology (ENVO) Unclassified
(36.792 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(70.755 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.
1JGI24751J29686_101096092
2Ga0062594_1000451443
3Ga0066677_105481831
4Ga0065704_104314731
5Ga0065707_103387603
6Ga0065707_105592303
7Ga0070690_1000554925
8Ga0070670_1006144421
9Ga0070670_1020464101
10Ga0066388_1018771511
11Ga0070687_1001254091
12Ga0070674_1010874902
13Ga0070688_1004265271
14Ga0070694_1018383351
15Ga0070706_1006315001
16Ga0070699_1005431301
17Ga0070686_1008217792
18Ga0070704_1001165671
19Ga0068854_1020033862
20Ga0068859_1002710621
21Ga0068861_1000242375
22Ga0068861_1019818642
23Ga0068861_1020948851
24Ga0068870_100514101
25Ga0068858_1007906531
26Ga0068860_1002832401
27Ga0075428_1009876162
28Ga0075421_1014674732
29Ga0075431_1000515701
30Ga0075431_1008555252
31Ga0075433_103786863
32Ga0075429_1019437941
33Ga0075419_107935151
34Ga0111539_107477042
35Ga0111539_109063501
36Ga0111539_114883112
37Ga0111539_118902251
38Ga0111539_126604891
39Ga0105245_124638161
40Ga0075418_103514653
41Ga0075418_106556954
42Ga0105247_108092761
43Ga0114129_100226291
44Ga0114129_131545262
45Ga0105243_107508942
46Ga0111538_113399691
47Ga0105242_102511511
48Ga0105242_128132482
49Ga0105248_114716401
50Ga0105248_119344621
51Ga0105248_133684181
52Ga0114942_12922701
53Ga0126312_113436991
54Ga0126380_104005841
55Ga0126377_135277922
56Ga0134122_118018541
57Ga0134122_131461151
58Ga0105246_119847963
59Ga0157305_101835912
60Ga0157297_104912842
61Ga0137416_108181721
62Ga0163162_123465601
63Ga0134078_102962401
64Ga0163163_109860521
65Ga0157380_107862244
66Ga0157379_122369962
67Ga0132258_102638856
68Ga0132256_1011754232
69Ga0132256_1029741371
70Ga0132257_1035755161
71Ga0132255_1017753442
72Ga0132255_1036050602
73Ga0184604_101654063
74Ga0184604_101723521
75Ga0184608_105255422
76Ga0184611_13495882
77Ga0190272_124736052
78Ga0066667_113732812
79Ga0173481_106756642
80Ga0210382_101173341
81Ga0210408_103572072
82Ga0207685_107787002
83Ga0207643_100461322
84Ga0207662_100203504
85Ga0207687_110173742
86Ga0207686_113218442
87Ga0207669_119178081
88Ga0207691_101918711
89Ga0207651_100626621
90Ga0207651_106755642
91Ga0207703_103894562
92Ga0207641_106705702
93Ga0207675_1017076452
94Ga0257152_10254512
95Ga0257181_10449072
96Ga0207428_107869611
97Ga0209382_115654221
98Ga0307277_103688781
99Ga0310813_110839122
100Ga0307469_101296251
101Ga0310901_101404241
102Ga0310897_107086141
103Ga0310890_101803813
104Ga0310895_101388412
105Ga0307470_106130491
106Ga0310810_111490221
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.00%    β-sheet: 2.17%    Coil/Unstructured: 47.83%
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51015202530354045MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
82.1%17.9%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Groundwater
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Serpentine Soil
Grasslands Soil
Switchgrass Rhizosphere
Soil
Grasslands Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Arabidopsis Rhizosphere
3.8%6.6%2.8%3.8%4.7%4.7%3.8%8.5%17.9%3.8%6.6%3.8%2.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24751J29686_1010960923300002459Corn, Switchgrass And Miscanthus RhizosphereMKYTAHNGRSMTANRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNA
Ga0062594_10004514433300005093SoilMTAKRSRTRVASVREYVASKPKESRASLEAVRRAILKALPNAQEG
Ga0066677_1054818313300005171SoilMTAKRSRKRVASVREYIASKPKESRSSLEAVRRAILKALPNAQEGLA
Ga0065704_1043147313300005289Switchgrass RhizosphereMTAKRSRKRVASVREYVASKPKESRGSLEAVRRAILKALPNAQEGLAYQM
Ga0065707_1033876033300005295Switchgrass RhizosphereMTAKRSRKRVGSVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTLN
Ga0065707_1055923033300005295Switchgrass RhizosphereMTAKRSRKRVASVREYLASKPKESRASLEAVRRAILKALPNAQEG
Ga0070690_10005549253300005330Switchgrass RhizosphereMTAERSRKRLGSVREYVASKPKESRASLEAVRRAILKALPNA
Ga0070670_10061444213300005331Switchgrass RhizosphereMTAKRSRKRVASVPEYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTLN
Ga0070670_10204641013300005331Switchgrass RhizosphereMAMSVNNVRSMKAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPV
Ga0066388_10187715113300005332Tropical Forest SoilVIMAKTAKKRVNSVREYIASQPKESRASLEAVRRAILGAIPT
Ga0070687_10012540913300005343Switchgrass RhizosphereMAMSVSNVRSMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTLN
Ga0070674_10108749023300005356Miscanthus RhizosphereMTAKRSRKRVALVREYLASKPKESRASLEAVRRAILKALPN
Ga0070688_10042652713300005365Switchgrass RhizosphereMTAKRSRTRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA
Ga0070694_10183833513300005444Corn, Switchgrass And Miscanthus RhizosphereMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALP
Ga0070706_10063150013300005467Corn, Switchgrass And Miscanthus RhizosphereMTAKRSRNRVASVREYVASKPKESRASLEAVRRAILKALP
Ga0070699_10054313013300005518Corn, Switchgrass And Miscanthus RhizosphereMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPDV
Ga0070686_10082177923300005544Switchgrass RhizosphereMTAKRSRKRVGSVREYVASKPKEARASLEAVRRAILKALPNAQEGLAYQMPAYTL
Ga0070704_10011656713300005549Corn, Switchgrass And Miscanthus RhizosphereMAAKRSRKRVASVREYVASKPKESRTSLEAVRRAILKALPNAQEG
Ga0068854_10200338623300005578Corn RhizosphereMTAKRPRKRVASVREYVASKPKESRASLEAVRRAILK
Ga0068859_10027106213300005617Switchgrass RhizosphereMKYTAHNGRSMTANRFRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQE
Ga0068861_10002423753300005719Switchgrass RhizosphereMAAKRSRKRVASVREYVASKPKESRTSLEAVRRAILKALPNAQEGLAYQMPA
Ga0068861_10198186423300005719Switchgrass RhizosphereMTAKRSRKRLASVREYIASKPKECRSSLEAVRRAILKALPNAQEGLAY
Ga0068861_10209488513300005719Switchgrass RhizosphereMSAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEG
Ga0068870_1005141013300005840Miscanthus RhizosphereMATSVSNVRSMTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEGL
Ga0068858_10079065313300005842Switchgrass RhizosphereMTAKWSRKRVASVREYVASKPKESRASLEAVRRAILKALPNA
Ga0068860_10028324013300005843Switchgrass RhizosphereMSAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGL
Ga0075428_10098761623300006844Populus RhizosphereMTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKAL
Ga0075421_10146747323300006845Populus RhizosphereMSAKRSRKRVASVREYVASKPKDSRASLEAVRRAILKALPNAQEGLA
Ga0075431_10005157013300006847Populus RhizosphereMTAKRSRKRFASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQ
Ga0075431_10085552523300006847Populus RhizosphereVRSMTAKRSRKRVASVREYLASKPKESRASLEAVRRAILKALPNAQEGL
Ga0075433_1037868633300006852Populus RhizosphereMTAKRSRKRVGSVREYVASKPKESRASLEAVRRAILKALPNAQEGLAY
Ga0075429_10194379413300006880Populus RhizosphereVRSMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAY
Ga0075419_1079351513300006969Populus RhizosphereMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMP
Ga0111539_1074770423300009094Populus RhizosphereMRSMTVKRSRKRVASVREYVASKPKESRASLEAVRR
Ga0111539_1090635013300009094Populus RhizosphereMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKA
Ga0111539_1148831123300009094Populus RhizosphereMKYTAHNGRSMTANRSRKRVASVREYVASKPKESRASLEAVRRAILKAL
Ga0111539_1189022513300009094Populus RhizosphereMTAKRPRKRVASVREYLASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYT
Ga0111539_1266048913300009094Populus RhizosphereMTAKQSRKRVASVREYVASKPKESRASLEAVRRAILKALP
Ga0105245_1246381613300009098Miscanthus RhizosphereMTAKRSPGKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEG
Ga0075418_1035146533300009100Populus RhizosphereMTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEGL
Ga0075418_1065569543300009100Populus RhizosphereMTAKRSRERVASVREYVASKPKESRASLEAVRRAIL
Ga0105247_1080927613300009101Switchgrass RhizosphereMTAKRSRKRVASVREYVASKPKASRASLEAVRRAILKALPNAQEGLACQMPAYTLNGV
Ga0114129_1002262913300009147Populus RhizosphereMVRSMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTL
Ga0114129_1315452623300009147Populus RhizosphereMMAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQE
Ga0105243_1075089423300009148Miscanthus RhizosphereMSAKRSRKRVASVREYVASQPKESRASLEAVRRAILKALPNAQEGLA
Ga0111538_1133996913300009156Populus RhizosphereMTAKRSGKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA
Ga0105242_1025115113300009176Miscanthus RhizosphereMTAKRSKKRVGSVREYVASKPKEARASLEAVRRAILKALPNAQEGLAYQMPAYT
Ga0105242_1281324823300009176Miscanthus RhizosphereMAAKRSRKRVASVREYVASKPKESRTSLEAVRRAILKALPNAQEGLAYQMP
Ga0105248_1147164013300009177Switchgrass RhizosphereMTAKRSRKRVASVREYIASKPKESRASLEAVRRAI
Ga0105248_1193446213300009177Switchgrass RhizosphereMTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEGLA
Ga0105248_1336841813300009177Switchgrass RhizosphereMTAKRYRKRVGSVREYVASKPKEARASLEAVRRAILKALP
Ga0114942_129227013300009527GroundwaterMAAKQPRRRVASVREYIASKPKESRASLEAVRRAILR
Ga0126312_1134369913300010041Serpentine SoilMTAKRSRRRVASVREYFASMPKESRTSLEAVRRAILKALPNAQE
Ga0126380_1040058413300010043Tropical Forest SoilMVKTAKKRVSPVREYIASKPKESRASLEAVRRAILETIPTVHEGLA
Ga0126377_1352779223300010362Tropical Forest SoilMKAKRSRKRVASVREYIASKPKESRARLEAVRRAILKALPNA
Ga0134122_1180185413300010400Terrestrial SoilMAAKQSRKRVGSVREYVASKPKESRASLEAVRRAILKALPNAQEG
Ga0134122_1314611513300010400Terrestrial SoilMSAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNA
Ga0105246_1198479633300011119Miscanthus RhizosphereMTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEG
Ga0157305_1018359123300012891SoilMTAKRSRKRVASVREYIASKPKESRASLEAVRRSILKALPNAEEGLAY
Ga0157297_1049128423300012914SoilMTAKRSRTRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTL
Ga0137416_1081817213300012927Vadose Zone SoilMTAKRSRKRVASVREYLASKPKESRASLEAVRRAILKALPNAQEGL
Ga0163162_1234656013300013306Switchgrass RhizosphereMTAKRSRTRVASVREYIASKPKASRASLEAVRRAILKAL
Ga0134078_1029624013300014157Grasslands SoilMTAKRSRKRVASVREYIASKPKESRASLDAVRRAILKALPNA
Ga0163163_1098605213300014325Switchgrass RhizosphereMTAKRSPRKRVASVREYIASKPKESRASLEAVRRAILK
Ga0157380_1078622443300014326Switchgrass RhizosphereMTVKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA
Ga0157379_1223699623300014968Switchgrass RhizosphereMSSMTAKRSRKRVTSVREYVASKPKESRASLEAVRRAILKALPNAQE
Ga0132258_1026388563300015371Arabidopsis RhizosphereMTAKRSRKRLASVREYVASKPKESRASLEAVRRAILKALPNAQ
Ga0132256_10117542323300015372Arabidopsis RhizosphereMTAKRSRKRVASVREYVASKPKESRGSLEAVRRAILKALPNAQEGLAYQMPAYTLNG
Ga0132256_10297413713300015372Arabidopsis RhizosphereMTAKRSRKRIASVREYVASKPKESRASLEAVRRAILKAISNAQEGLAYQMPAYTLNGVGV
Ga0132257_10357551613300015373Arabidopsis RhizosphereMRGMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA
Ga0132255_10177534423300015374Arabidopsis RhizosphereMRGMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPKAQEGLAYQMPAYTL
Ga0132255_10360506023300015374Arabidopsis RhizosphereMTAKRSGKRVASVREYVASKPKESRGSLEAVRRAILKALPNAQEGLAYQMPAYTLNGVG
Ga0184604_1016540633300018000Groundwater SedimentMTAKRSRKRVASVREYVASKPKESRASLEAVRRAIL
Ga0184604_1017235213300018000Groundwater SedimentMSAKRSRKRVASVREYVASKPKESRASLEAVRRAI
Ga0184608_1052554223300018028Groundwater SedimentMTAKRSRKRVASVREYGASKPKESRASLEAVRRAILKALPNAQEGLAY
Ga0184611_134958823300018067Groundwater SedimentMSAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA
Ga0190272_1247360523300018429SoilMTAKRARKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAY
Ga0066667_1137328123300018433Grasslands SoilMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA
Ga0173481_1067566423300019356SoilMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILNALPNAQEGLAYQMPAYTLN
Ga0210382_1011733413300021080Groundwater SedimentMTAKRSRKRVASVRDYVASKPKESRASLEAVRRAILKALPDAQEG
Ga0210408_1035720723300021178SoilMAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALP
Ga0207685_1077870023300025905Corn, Switchgrass And Miscanthus RhizosphereVRSMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA
Ga0207643_1004613223300025908Miscanthus RhizosphereMATSVSNVRSMTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKAIP
Ga0207662_1002035043300025918Switchgrass RhizosphereMAMSVNNVRSMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILK
Ga0207687_1101737423300025927Miscanthus RhizosphereMTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKA
Ga0207686_1132184423300025934Miscanthus RhizosphereMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAY
Ga0207669_1191780813300025937Miscanthus RhizosphereMTAKRSGKRVASVREYIASKPKESRASLEAVRRAILKALPTAQ
Ga0207691_1019187113300025940Miscanthus RhizosphereMAMSVNNVRSMKAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA
Ga0207651_1006266213300025960Switchgrass RhizosphereMTAERSRKRLGSVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPA
Ga0207651_1067556423300025960Switchgrass RhizosphereMAAKRPRKRVASVREYVASKPKESRASLEAVRRAILKAVPNAQEGLAYQMPA
Ga0207703_1038945623300026035Switchgrass RhizosphereMTAERSRKRLGSVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMP
Ga0207641_1067057023300026088Switchgrass RhizosphereMAKRSRKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEGLA
Ga0207675_10170764523300026118Switchgrass RhizosphereMTAKRSRTRVASVREYVASKPKESRASLEAVRRAILK
Ga0257152_102545123300026369SoilMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQ
Ga0257181_104490723300026499SoilMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGL
Ga0207428_1078696113300027907Populus RhizosphereLLRSMTAKRSRTRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTLN
Ga0209382_1156542213300027909Populus RhizosphereMTAKRSRKRFASVREYVASKPKESRASLEAVRRAI
Ga0307277_1036887813300028881SoilMSAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALP
Ga0310813_1108391223300031716SoilMAMSVNNVRSMKAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQM
Ga0307469_1012962513300031720Hardwood Forest SoilMTAKRSRKRVASVREYVASKPKEHRASLEAVRRAILKALPNAQEGLAYQMP
Ga0310901_1014042413300031940SoilMRGMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGL
Ga0310897_1070861413300032003SoilMTAKRSRKRVASVREYVASKPRESRASLEAVRRAILK
Ga0310890_1018038133300032075SoilMRGMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPK
Ga0310895_1013884123300032122SoilMTAKRSRKRVASVREYLASKPKESRASLGAVRRAILKA
Ga0307470_1061304913300032174Hardwood Forest SoilMAAKRSRKRVASVREYVLSKPKESRASLEAVRRAILKA
Ga0310810_1114902213300033412SoilMAMSVSNVRSMTAKRSRKRVASVREYIASKPKESRASLEAVR


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