Basic Information | |
---|---|
Family ID | F093459 |
Family Type | Metagenome |
Number of Sequences | 106 |
Average Sequence Length | 46 residues |
Representative Sequence | MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGL |
Number of Associated Samples | 87 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 15.09 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 89.62 % |
Associated GOLD sequencing projects | 77 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (82.075 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.924 % of family members) |
Environment Ontology (ENVO) | Unclassified (36.792 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (70.755 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 50.00% β-sheet: 2.17% Coil/Unstructured: 47.83% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Groundwater Sediment Groundwater Groundwater Sediment Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Grasslands Soil Switchgrass Rhizosphere Soil Grasslands Soil Soil Hardwood Forest Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Arabidopsis Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Arabidopsis Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI24751J29686_101096092 | 3300002459 | Corn, Switchgrass And Miscanthus Rhizosphere | MKYTAHNGRSMTANRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNA |
Ga0062594_1000451443 | 3300005093 | Soil | MTAKRSRTRVASVREYVASKPKESRASLEAVRRAILKALPNAQEG |
Ga0066677_105481831 | 3300005171 | Soil | MTAKRSRKRVASVREYIASKPKESRSSLEAVRRAILKALPNAQEGLA |
Ga0065704_104314731 | 3300005289 | Switchgrass Rhizosphere | MTAKRSRKRVASVREYVASKPKESRGSLEAVRRAILKALPNAQEGLAYQM |
Ga0065707_103387603 | 3300005295 | Switchgrass Rhizosphere | MTAKRSRKRVGSVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTLN |
Ga0065707_105592303 | 3300005295 | Switchgrass Rhizosphere | MTAKRSRKRVASVREYLASKPKESRASLEAVRRAILKALPNAQEG |
Ga0070690_1000554925 | 3300005330 | Switchgrass Rhizosphere | MTAERSRKRLGSVREYVASKPKESRASLEAVRRAILKALPNA |
Ga0070670_1006144421 | 3300005331 | Switchgrass Rhizosphere | MTAKRSRKRVASVPEYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTLN |
Ga0070670_1020464101 | 3300005331 | Switchgrass Rhizosphere | MAMSVNNVRSMKAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPV |
Ga0066388_1018771511 | 3300005332 | Tropical Forest Soil | VIMAKTAKKRVNSVREYIASQPKESRASLEAVRRAILGAIPT |
Ga0070687_1001254091 | 3300005343 | Switchgrass Rhizosphere | MAMSVSNVRSMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTLN |
Ga0070674_1010874902 | 3300005356 | Miscanthus Rhizosphere | MTAKRSRKRVALVREYLASKPKESRASLEAVRRAILKALPN |
Ga0070688_1004265271 | 3300005365 | Switchgrass Rhizosphere | MTAKRSRTRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA |
Ga0070694_1018383351 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALP |
Ga0070706_1006315001 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MTAKRSRNRVASVREYVASKPKESRASLEAVRRAILKALP |
Ga0070699_1005431301 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPDV |
Ga0070686_1008217792 | 3300005544 | Switchgrass Rhizosphere | MTAKRSRKRVGSVREYVASKPKEARASLEAVRRAILKALPNAQEGLAYQMPAYTL |
Ga0070704_1001165671 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | MAAKRSRKRVASVREYVASKPKESRTSLEAVRRAILKALPNAQEG |
Ga0068854_1020033862 | 3300005578 | Corn Rhizosphere | MTAKRPRKRVASVREYVASKPKESRASLEAVRRAILK |
Ga0068859_1002710621 | 3300005617 | Switchgrass Rhizosphere | MKYTAHNGRSMTANRFRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQE |
Ga0068861_1000242375 | 3300005719 | Switchgrass Rhizosphere | MAAKRSRKRVASVREYVASKPKESRTSLEAVRRAILKALPNAQEGLAYQMPA |
Ga0068861_1019818642 | 3300005719 | Switchgrass Rhizosphere | MTAKRSRKRLASVREYIASKPKECRSSLEAVRRAILKALPNAQEGLAY |
Ga0068861_1020948851 | 3300005719 | Switchgrass Rhizosphere | MSAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEG |
Ga0068870_100514101 | 3300005840 | Miscanthus Rhizosphere | MATSVSNVRSMTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEGL |
Ga0068858_1007906531 | 3300005842 | Switchgrass Rhizosphere | MTAKWSRKRVASVREYVASKPKESRASLEAVRRAILKALPNA |
Ga0068860_1002832401 | 3300005843 | Switchgrass Rhizosphere | MSAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGL |
Ga0075428_1009876162 | 3300006844 | Populus Rhizosphere | MTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKAL |
Ga0075421_1014674732 | 3300006845 | Populus Rhizosphere | MSAKRSRKRVASVREYVASKPKDSRASLEAVRRAILKALPNAQEGLA |
Ga0075431_1000515701 | 3300006847 | Populus Rhizosphere | MTAKRSRKRFASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQ |
Ga0075431_1008555252 | 3300006847 | Populus Rhizosphere | VRSMTAKRSRKRVASVREYLASKPKESRASLEAVRRAILKALPNAQEGL |
Ga0075433_103786863 | 3300006852 | Populus Rhizosphere | MTAKRSRKRVGSVREYVASKPKESRASLEAVRRAILKALPNAQEGLAY |
Ga0075429_1019437941 | 3300006880 | Populus Rhizosphere | VRSMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAY |
Ga0075419_107935151 | 3300006969 | Populus Rhizosphere | MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMP |
Ga0111539_107477042 | 3300009094 | Populus Rhizosphere | MRSMTVKRSRKRVASVREYVASKPKESRASLEAVRR |
Ga0111539_109063501 | 3300009094 | Populus Rhizosphere | MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKA |
Ga0111539_114883112 | 3300009094 | Populus Rhizosphere | MKYTAHNGRSMTANRSRKRVASVREYVASKPKESRASLEAVRRAILKAL |
Ga0111539_118902251 | 3300009094 | Populus Rhizosphere | MTAKRPRKRVASVREYLASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYT |
Ga0111539_126604891 | 3300009094 | Populus Rhizosphere | MTAKQSRKRVASVREYVASKPKESRASLEAVRRAILKALP |
Ga0105245_124638161 | 3300009098 | Miscanthus Rhizosphere | MTAKRSPGKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEG |
Ga0075418_103514653 | 3300009100 | Populus Rhizosphere | MTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEGL |
Ga0075418_106556954 | 3300009100 | Populus Rhizosphere | MTAKRSRERVASVREYVASKPKESRASLEAVRRAIL |
Ga0105247_108092761 | 3300009101 | Switchgrass Rhizosphere | MTAKRSRKRVASVREYVASKPKASRASLEAVRRAILKALPNAQEGLACQMPAYTLNGV |
Ga0114129_100226291 | 3300009147 | Populus Rhizosphere | MVRSMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTL |
Ga0114129_131545262 | 3300009147 | Populus Rhizosphere | MMAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQE |
Ga0105243_107508942 | 3300009148 | Miscanthus Rhizosphere | MSAKRSRKRVASVREYVASQPKESRASLEAVRRAILKALPNAQEGLA |
Ga0111538_113399691 | 3300009156 | Populus Rhizosphere | MTAKRSGKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA |
Ga0105242_102511511 | 3300009176 | Miscanthus Rhizosphere | MTAKRSKKRVGSVREYVASKPKEARASLEAVRRAILKALPNAQEGLAYQMPAYT |
Ga0105242_128132482 | 3300009176 | Miscanthus Rhizosphere | MAAKRSRKRVASVREYVASKPKESRTSLEAVRRAILKALPNAQEGLAYQMP |
Ga0105248_114716401 | 3300009177 | Switchgrass Rhizosphere | MTAKRSRKRVASVREYIASKPKESRASLEAVRRAI |
Ga0105248_119344621 | 3300009177 | Switchgrass Rhizosphere | MTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEGLA |
Ga0105248_133684181 | 3300009177 | Switchgrass Rhizosphere | MTAKRYRKRVGSVREYVASKPKEARASLEAVRRAILKALP |
Ga0114942_12922701 | 3300009527 | Groundwater | MAAKQPRRRVASVREYIASKPKESRASLEAVRRAILR |
Ga0126312_113436991 | 3300010041 | Serpentine Soil | MTAKRSRRRVASVREYFASMPKESRTSLEAVRRAILKALPNAQE |
Ga0126380_104005841 | 3300010043 | Tropical Forest Soil | MVKTAKKRVSPVREYIASKPKESRASLEAVRRAILETIPTVHEGLA |
Ga0126377_135277922 | 3300010362 | Tropical Forest Soil | MKAKRSRKRVASVREYIASKPKESRARLEAVRRAILKALPNA |
Ga0134122_118018541 | 3300010400 | Terrestrial Soil | MAAKQSRKRVGSVREYVASKPKESRASLEAVRRAILKALPNAQEG |
Ga0134122_131461151 | 3300010400 | Terrestrial Soil | MSAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNA |
Ga0105246_119847963 | 3300011119 | Miscanthus Rhizosphere | MTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEG |
Ga0157305_101835912 | 3300012891 | Soil | MTAKRSRKRVASVREYIASKPKESRASLEAVRRSILKALPNAEEGLAY |
Ga0157297_104912842 | 3300012914 | Soil | MTAKRSRTRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTL |
Ga0137416_108181721 | 3300012927 | Vadose Zone Soil | MTAKRSRKRVASVREYLASKPKESRASLEAVRRAILKALPNAQEGL |
Ga0163162_123465601 | 3300013306 | Switchgrass Rhizosphere | MTAKRSRTRVASVREYIASKPKASRASLEAVRRAILKAL |
Ga0134078_102962401 | 3300014157 | Grasslands Soil | MTAKRSRKRVASVREYIASKPKESRASLDAVRRAILKALPNA |
Ga0163163_109860521 | 3300014325 | Switchgrass Rhizosphere | MTAKRSPRKRVASVREYIASKPKESRASLEAVRRAILK |
Ga0157380_107862244 | 3300014326 | Switchgrass Rhizosphere | MTVKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA |
Ga0157379_122369962 | 3300014968 | Switchgrass Rhizosphere | MSSMTAKRSRKRVTSVREYVASKPKESRASLEAVRRAILKALPNAQE |
Ga0132258_102638856 | 3300015371 | Arabidopsis Rhizosphere | MTAKRSRKRLASVREYVASKPKESRASLEAVRRAILKALPNAQ |
Ga0132256_1011754232 | 3300015372 | Arabidopsis Rhizosphere | MTAKRSRKRVASVREYVASKPKESRGSLEAVRRAILKALPNAQEGLAYQMPAYTLNG |
Ga0132256_1029741371 | 3300015372 | Arabidopsis Rhizosphere | MTAKRSRKRIASVREYVASKPKESRASLEAVRRAILKAISNAQEGLAYQMPAYTLNGVGV |
Ga0132257_1035755161 | 3300015373 | Arabidopsis Rhizosphere | MRGMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA |
Ga0132255_1017753442 | 3300015374 | Arabidopsis Rhizosphere | MRGMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPKAQEGLAYQMPAYTL |
Ga0132255_1036050602 | 3300015374 | Arabidopsis Rhizosphere | MTAKRSGKRVASVREYVASKPKESRGSLEAVRRAILKALPNAQEGLAYQMPAYTLNGVG |
Ga0184604_101654063 | 3300018000 | Groundwater Sediment | MTAKRSRKRVASVREYVASKPKESRASLEAVRRAIL |
Ga0184604_101723521 | 3300018000 | Groundwater Sediment | MSAKRSRKRVASVREYVASKPKESRASLEAVRRAI |
Ga0184608_105255422 | 3300018028 | Groundwater Sediment | MTAKRSRKRVASVREYGASKPKESRASLEAVRRAILKALPNAQEGLAY |
Ga0184611_13495882 | 3300018067 | Groundwater Sediment | MSAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA |
Ga0190272_124736052 | 3300018429 | Soil | MTAKRARKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAY |
Ga0066667_113732812 | 3300018433 | Grasslands Soil | MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA |
Ga0173481_106756642 | 3300019356 | Soil | MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILNALPNAQEGLAYQMPAYTLN |
Ga0210382_101173341 | 3300021080 | Groundwater Sediment | MTAKRSRKRVASVRDYVASKPKESRASLEAVRRAILKALPDAQEG |
Ga0210408_103572072 | 3300021178 | Soil | MAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALP |
Ga0207685_107787002 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | VRSMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA |
Ga0207643_100461322 | 3300025908 | Miscanthus Rhizosphere | MATSVSNVRSMTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKAIP |
Ga0207662_100203504 | 3300025918 | Switchgrass Rhizosphere | MAMSVNNVRSMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILK |
Ga0207687_110173742 | 3300025927 | Miscanthus Rhizosphere | MTAKRSRKRVASVREYIASKPKESRASLEAVRRAILKA |
Ga0207686_113218442 | 3300025934 | Miscanthus Rhizosphere | MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAY |
Ga0207669_119178081 | 3300025937 | Miscanthus Rhizosphere | MTAKRSGKRVASVREYIASKPKESRASLEAVRRAILKALPTAQ |
Ga0207691_101918711 | 3300025940 | Miscanthus Rhizosphere | MAMSVNNVRSMKAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLA |
Ga0207651_100626621 | 3300025960 | Switchgrass Rhizosphere | MTAERSRKRLGSVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPA |
Ga0207651_106755642 | 3300025960 | Switchgrass Rhizosphere | MAAKRPRKRVASVREYVASKPKESRASLEAVRRAILKAVPNAQEGLAYQMPA |
Ga0207703_103894562 | 3300026035 | Switchgrass Rhizosphere | MTAERSRKRLGSVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMP |
Ga0207641_106705702 | 3300026088 | Switchgrass Rhizosphere | MAKRSRKRVASVREYIASKPKESRASLEAVRRAILKALPNAQEGLA |
Ga0207675_1017076452 | 3300026118 | Switchgrass Rhizosphere | MTAKRSRTRVASVREYVASKPKESRASLEAVRRAILK |
Ga0257152_10254512 | 3300026369 | Soil | MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQ |
Ga0257181_10449072 | 3300026499 | Soil | MTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGL |
Ga0207428_107869611 | 3300027907 | Populus Rhizosphere | LLRSMTAKRSRTRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQMPAYTLN |
Ga0209382_115654221 | 3300027909 | Populus Rhizosphere | MTAKRSRKRFASVREYVASKPKESRASLEAVRRAI |
Ga0307277_103688781 | 3300028881 | Soil | MSAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALP |
Ga0310813_110839122 | 3300031716 | Soil | MAMSVNNVRSMKAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGLAYQM |
Ga0307469_101296251 | 3300031720 | Hardwood Forest Soil | MTAKRSRKRVASVREYVASKPKEHRASLEAVRRAILKALPNAQEGLAYQMP |
Ga0310901_101404241 | 3300031940 | Soil | MRGMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPNAQEGL |
Ga0310897_107086141 | 3300032003 | Soil | MTAKRSRKRVASVREYVASKPRESRASLEAVRRAILK |
Ga0310890_101803813 | 3300032075 | Soil | MRGMTAKRSRKRVASVREYVASKPKESRASLEAVRRAILKALPK |
Ga0310895_101388412 | 3300032122 | Soil | MTAKRSRKRVASVREYLASKPKESRASLGAVRRAILKA |
Ga0307470_106130491 | 3300032174 | Hardwood Forest Soil | MAAKRSRKRVASVREYVLSKPKESRASLEAVRRAILKA |
Ga0310810_111490221 | 3300033412 | Soil | MAMSVSNVRSMTAKRSRKRVASVREYIASKPKESRASLEAVR |
⦗Top⦘ |