Basic Information | |
---|---|
Family ID | F093414 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 54 residues |
Representative Sequence | MAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Number of Associated Samples | 60 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 57.14 % |
% of genes near scaffold ends (potentially truncated) | 40.57 % |
% of genes from short scaffolds (< 2000 bps) | 83.02 % |
Associated GOLD sequencing projects | 51 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (50.943 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (89.623 % of family members) |
Environment Ontology (ENVO) | Unclassified (89.623 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (100.000 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 25.49% β-sheet: 0.00% Coil/Unstructured: 74.51% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Marine Plankton Aqueous Seawater Freshwater To Marine Saline Gradient Salt Marsh Estuarine Water Pelagic Marine Marine Marine |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOWin2010_1000140515 | 3300000117 | Marine | MAKLLVAFLMSLVLFGCNNNPSSDASASDTEPTQEVPAEDAPMDEAPAENADSE* |
ACM18_10307092 | 3300001778 | Marine Plankton | MMRSNSTSNSFFQRKIMAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEE |
S2T7BSa_15111371 | 3300002133 | Marine | IMAKLLVAFLMSLVLFGCNNNPSSDASASDTEPTEEVPAEDAPMDEAPAENADSE* |
Ga0075474_100164084 | 3300006025 | Aqueous | MAKLLVAFLMSLVLFGCNNNPSSDVSASDTEPTQEVPAEDAPMDEAPAENADSE* |
Ga0075462_102348202 | 3300006027 | Aqueous | MAKFLVAFLMSLVLFGCNNNSSPDVSASDPEPTQEAPAEDAPMGEAPAENSDSE* |
Ga0075476_100220732 | 3300006867 | Aqueous | MAKLLVAFLMSLVLFGCNNNPSSDASASDTEPTEEVPAEDAPMDEAPAENADSE* |
Ga0115553_11221953 | 3300009445 | Pelagic Marine | MAKLLVAFLMSLVLFGCNNNSSSDVSASDTEPTQEVPAEDAPMDEAPAENADSE* |
Ga0129324_100683942 | 3300010368 | Freshwater To Marine Saline Gradient | MAKFLIAFLMSLVLFGCNNNSSPDVSASDPEPTQEAPAEDAPMGEAPAENSDSE* |
Ga0182048_10548922 | 3300016724 | Salt Marsh | MAKLLVAFLMSLVLFGCNNNPSSDVSASDTEPTQEVPAEDAPMDEAPAE |
Ga0182056_11610162 | 3300016729 | Salt Marsh | NSFFQRKIMAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEASLEEAPADTE |
Ga0182057_11018652 | 3300016732 | Salt Marsh | FFQRKIMAKIFVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPADTE |
Ga0182053_12294802 | 3300016749 | Salt Marsh | MAKIFVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPADTE |
Ga0182072_11850471 | 3300016754 | Salt Marsh | PPLKIVIVILYTNDMMRSNSTSNSFFQRKIMAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPADTE |
Ga0182082_15225552 | 3300016771 | Salt Marsh | MAKIFVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPLEEAPADTE |
Ga0182080_10949372 | 3300016787 | Salt Marsh | KKVIVFLYTNDMMRSNSTSNSFFQRKIMAKIFVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0181565_100463504 | 3300017818 | Salt Marsh | MMRSNSTSNSFFQRKIMAKIFVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0181565_100519274 | 3300017818 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDASTSDSEPVQEAPVEEAPVDSEPVQEAPAETE |
Ga0181565_101525712 | 3300017818 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADTEPAQEAPADDTPADSEPAQEAPAETE |
Ga0181565_101615733 | 3300017818 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADSEPTQEAPVDEAPVDSEPAQEAPADTE |
Ga0181565_102834631 | 3300017818 | Salt Marsh | MAKILVAFLISLVLFGCNNNSSSDVSTADSEPAQEAPVEEAPADTE |
Ga0181565_103407892 | 3300017818 | Salt Marsh | MMRSNSTSNSFFQRKIMAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPADTE |
Ga0181565_104435722 | 3300017818 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSHDVSTADSEPAQEAPAEEAPVDSEPAQEAPADTE |
Ga0181565_105040071 | 3300017818 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0181565_107188402 | 3300017818 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADSEPVQEAPVEEAPVNSEPAQEAPAETE |
Ga0181565_108185791 | 3300017818 | Salt Marsh | MAKILVAFLMTLVLFGCNNNSSYDVSTAESEPAQEAPAEEAPLDSEPAQEAPADAE |
Ga0181552_100242002 | 3300017824 | Salt Marsh | MAKIFVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0181552_101512342 | 3300017824 | Salt Marsh | MAKLLVAFLMSLVLFGCNNNPSSDVSASDTEPTQEVPAEDAPMDEAPAENADSE |
Ga0181552_102419222 | 3300017824 | Salt Marsh | MAKLLVAFLMSLVLFGCNNNPSSDVSALDTEPTQEVPVEDAPMDEAPAESADSE |
Ga0181552_102583971 | 3300017824 | Salt Marsh | MAKFLVAFLMSLVLFGCNNNSSPDVSASDPEPTQEAPAEDAPMGEAPAENSDSE |
Ga0181552_105790692 | 3300017824 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPAEEAPADTE |
Ga0181584_103454611 | 3300017949 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPADTE |
Ga0181584_103499063 | 3300017949 | Salt Marsh | MAKILVALLMSLVLFGCNNNSSNDVSTADSEPAQEAPIDDTPADSEPTQEAPAETE |
Ga0181577_103553381 | 3300017951 | Salt Marsh | MRSNSTSNSFFQRKIMAKILVAFLMSLVLFGCNNNSSNDASTSDSEPVQEAPVEEAPVDSEPVQEAPAETE |
Ga0181577_107186753 | 3300017951 | Salt Marsh | VAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPLEEAPADTE |
Ga0181577_108967441 | 3300017951 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSHDVSTADSEPAQEAPVDSEPAQEAPADTE |
Ga0181580_105003993 | 3300017956 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADTEPAQEAPVDDTPADSEPAQEVPAETE |
Ga0181580_110226192 | 3300017956 | Salt Marsh | VAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPAEEAPADTE |
Ga0181571_103611781 | 3300017957 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDDSTADSEPVQEAPVEEAPIDSEPAQEAPADTE |
Ga0181582_104257293 | 3300017958 | Salt Marsh | MAKILVAFLISLVLFGCNNNSSSDVSTADTEPAQEAPVDDTPADSEPAQEVPAETE |
Ga0181581_101918972 | 3300017962 | Salt Marsh | MIRSNSTSNSFFQRKIMAKIFVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0181581_103320201 | 3300017962 | Salt Marsh | MMRSNSLLNSFFQRKIMAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPADTE |
Ga0181581_109475702 | 3300017962 | Salt Marsh | LLNSFFQRKIMAKILVAFLMSLVLFGCNNNSSNDASTSDSEPVQEAPVEEAPVDSEPVQEAPAETE |
Ga0181589_101546993 | 3300017964 | Salt Marsh | MAKLLVAFLMSLVLFGCNNNPSSDVSALDTEPTQEVPVEDAPMYEAPAESADSE |
Ga0181589_103783503 | 3300017964 | Salt Marsh | MAKILVVFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPIDSEPAQEAPADTE |
Ga0181589_107414351 | 3300017964 | Salt Marsh | LVLFGCNNSSNDVSTADTEPAQEAPVDDTPADSEPAQEAPAETE |
Ga0181589_108837432 | 3300017964 | Salt Marsh | MRSNSTSNSFFQRKIMAKIFVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0181587_100322171 | 3300017968 | Salt Marsh | MAKLLVAFLMSLVLFGCNNNPSSDVSALDTEPTQEVPVEDAPMDEAP |
Ga0181587_102147171 | 3300017968 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSHDVSTADSESAQEAPVEEAPI |
Ga0181587_105673851 | 3300017968 | Salt Marsh | NNSSHDVSTADSEPAQEAPAEEAPVDSEPAQEAPADTE |
Ga0181585_105511643 | 3300017969 | Salt Marsh | LVAFLMSLVLFGCNNNSSNDVSTADSEPVQEAPVEEAPIDSEPAQEAPADTE |
Ga0181576_101061022 | 3300017985 | Salt Marsh | MAKILVAFLMTLVLFGCNNNSSNDVSTADSEPAQEAPAEEAPLDSEPAQEAPADAE |
Ga0181576_105206523 | 3300017985 | Salt Marsh | KIMAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0181576_108899312 | 3300017985 | Salt Marsh | MAKILVAFLISLVLFGCNNNSSNDVSTADSETAQEAPLEEAPVDSEPAQEAPAETE |
Ga0181569_102725732 | 3300017986 | Salt Marsh | MAKILVAFLMSLVLFGCNNSSNDVSTADTEPAQEAPVDDTPADSEPAQEAPADTE |
Ga0181569_106723432 | 3300017986 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSHDVSTADTEAAQEAPADDTPADSEPAQEAPAETE |
Ga0181579_100555403 | 3300018039 | Salt Marsh | MAKLLVAFLMSLVLFGCNNNPSSDVSASDTEPTQEVPAEDAPMDEAPAESADSE |
Ga0181572_100159614 | 3300018049 | Salt Marsh | VRIQFRILFLRKIMAKILVAFLMSLVLFGCNNNSSNDASTSDSEPVQEAPVEEAPVDSEPVQEAPAETE |
Ga0181572_102673542 | 3300018049 | Salt Marsh | LVAFLMSLVLFGCNNNPSSDVSALDTEPTQEVPVEDAPMDEAPAESADSE |
Ga0181572_103310703 | 3300018049 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSDDVSTSDSEPAQEAPAEEAPVDSEAAQEAPADTE |
Ga0181572_103362923 | 3300018049 | Salt Marsh | AFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0181572_104966513 | 3300018049 | Salt Marsh | SLVLFGCNNNSSNDVSTADTEPAQEAPVDDTPADSEPAQEAPADTE |
Ga0181560_100169753 | 3300018413 | Salt Marsh | MMRSNSLLNSFFQRKIMAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0181560_100699322 | 3300018413 | Salt Marsh | MAKLLVAFLMSLVLFGCNNNPSSDASASDTEPTQEVPAEDAPMDEAPAENADSE |
Ga0181558_101261053 | 3300018417 | Salt Marsh | MIRSNSIWILFLRKIMAKFLVAFLMSLVLFGCNNNSSPDVSASDPEPTQEAPAEDAPMGEAPAENSDSE |
Ga0181558_105116403 | 3300018417 | Salt Marsh | ISLVLFGCNNNSSSDVSTADTEPAQEAPVDDTPADSEPAQEVPAETE |
Ga0181567_105637313 | 3300018418 | Salt Marsh | FGCNNNSSNDVSTADTEPAQEAPVDDTPADSEPAQEAPADTE |
Ga0181567_108613192 | 3300018418 | Salt Marsh | VAFLMSLVLFGCNNNSSNDVSTADTEPAQEAPVDDTSADSEPAQEAPAETE |
Ga0181566_105414472 | 3300018426 | Salt Marsh | MAKILVAFLMSLVLFGCNNSSNDVSTADTEPAQEAPVDDTSADSEPAQEAPAETE |
Ga0181566_108004892 | 3300018426 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSHDVSTADSEPAQEAPVEEAPVEEGPADKE |
Ga0181566_108117632 | 3300018426 | Salt Marsh | RKIMAKILVAFLISLVLFGCNNNTSNDVSTADSETAQEAPLEEAPVDSEPAQEAPAETE |
Ga0181568_105004753 | 3300018428 | Salt Marsh | KIFVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0181568_106554852 | 3300018428 | Salt Marsh | MTKILVAFLMSLVLFGCNNNSSNDVSTADTEPAQEAPVDDTPADSEPAQEAPADTE |
Ga0181564_105206973 | 3300018876 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADSEPVQEAPVEEAPVEEAPADTE |
Ga0181564_106320182 | 3300018876 | Salt Marsh | AFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPADTE |
Ga0182061_13675532 | 3300019266 | Salt Marsh | AKILVAFLMSLVLFGCNNNSSNDVSTADTEPAQEAPADDTPADSEPAQEAPAETE |
Ga0182059_11774654 | 3300019272 | Salt Marsh | LMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPLEEAPADTE |
Ga0182077_11070322 | 3300019281 | Salt Marsh | KILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPADTE |
Ga0181562_102642302 | 3300019459 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADYEPAQEAPVEEAPVEEAPADAE |
Ga0181575_101788803 | 3300020055 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPVEEAPAETE |
Ga0181575_102876593 | 3300020055 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTVDSEPAQEAPVEEAPVEEAPADTE |
Ga0181574_103103432 | 3300020056 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTTDSEPAQEAPVDDTLAESEPAQEAPAETE |
Ga0181574_106632641 | 3300020056 | Salt Marsh | LMSLVLFGCNNNSSNDVSTADTEPAQEAPADDTPADSEPAQEAPAETE |
Ga0181602_100808202 | 3300020173 | Salt Marsh | WILFLRKIMAKFLVAFLMSLVLFGCNNNSSPDVSASDPEPTQEAPAEDAPMGEAPAENSDSE |
Ga0181570_100118691 | 3300020207 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSHDVSTADSEPAQEAPVEEAPVDSEPAQEAPADTE |
Ga0181570_105152752 | 3300020207 | Salt Marsh | SLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0181598_10217184 | 3300020810 | Salt Marsh | LFLRKIMAKFLVAFLMSLVLFGCNNNSSPDVSASDPEPTQEAPAEDAPMGEAPAENSDSE |
Ga0213863_101413322 | 3300021371 | Seawater | MAKLLVAFLMSLVLFGCNNNPSSDASASDTEPTEEVPAEDAPMDEAPAENADSE |
Ga0222716_106650092 | 3300021959 | Estuarine Water | MAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPVEEAPADTE |
Ga0222714_103829811 | 3300021961 | Estuarine Water | ILFLRKIMAKLLVAFLMSLVLFGCNNNPSSDVSASDSEPTQEVPAEDAPMDEAPAENSDS |
Ga0255755_12066472 | 3300022909 | Salt Marsh | MAKLLVAFLMSLVLFGCNNNSSPDVSASDPEPTQEAPAEDAPMGEAPAENSDSE |
Ga0255783_101252401 | 3300022923 | Salt Marsh | MAKLLVAFLMSLVLFGCNNNPSSDVSALDTEPTQEVPVEDAPMDE |
Ga0255783_103532882 | 3300022923 | Salt Marsh | MAKILVAFLISLVLFGCNNNSSSDVSTADSEPAQEAPVEEA |
Ga0255752_103214462 | 3300022929 | Salt Marsh | LVAFLMSLVLFGCNNNPSSDVSASDSEPTQEVPAEDAPMDEAPAENSDSE |
Ga0255780_100494273 | 3300022935 | Salt Marsh | LRKIMAKLLVAFLMSLVLFGCNNNPSSDVSALDTEPTQEVPVEDAPMDEAPAESADSE |
Ga0255774_100670911 | 3300023087 | Salt Marsh | KIVIVILYTNDMMRSNSTSNSFFQRKIMAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPADTE |
Ga0255782_100286581 | 3300023105 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPAD |
Ga0255782_103599852 | 3300023105 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADTEPAQEAPVDDTPADSEPAQEAPADTE |
Ga0255782_103600261 | 3300023105 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSNDVSTADSEPVQEAPVEEAPIDSEPAQEAPADTE |
Ga0255784_105724422 | 3300023108 | Salt Marsh | FLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPADTE |
Ga0255751_100247285 | 3300023116 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSSDVSTADTEPAQEAPVDDTPADSEPAQEVPAETE |
Ga0255751_103697401 | 3300023116 | Salt Marsh | MAKLLVAFLMSLVLFGCNNNPSSDVSALDTEPTQEVPAEDAPMDEAPAENADSE |
Ga0255762_105042562 | 3300023119 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSHDVSAADSESAQEAPAEEAPIDSESAQEAPADTE |
Ga0255777_104270012 | 3300023175 | Salt Marsh | MAKILVAFLMSLVLFGCNNSSNDVSTADTEPAQEAPVDDTPADSEPAQEVPAETE |
Ga0255759_102619042 | 3300023178 | Salt Marsh | MAKILVAFLMSLVLFGCNNNSSHDVSTADTEAAQEASADDTPADSETAQEAPAETE |
Ga0233450_100282115 | 3300028115 | Salt Marsh | MAKIFVAFLMSLVLFGCNNNSSNDVSTADSEPAQEAPVEEAPVEEAPVEEAPA |
Ga0233450_101733532 | 3300028115 | Salt Marsh | MAKLLVAFLMSLVLFGCNNNPSSDVSALDTEPTQEVPVEDAPMYEAP |
⦗Top⦘ |