Basic Information | |
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Family ID | F093294 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 52 residues |
Representative Sequence | WEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Number of Associated Samples | 97 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 1.89 % |
% of genes near scaffold ends (potentially truncated) | 90.57 % |
% of genes from short scaffolds (< 2000 bps) | 85.85 % |
Associated GOLD sequencing projects | 95 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (59.434 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (21.698 % of family members) |
Environment Ontology (ENVO) | Unclassified (51.887 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (65.094 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 41.18% β-sheet: 19.61% Coil/Unstructured: 39.22% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Freshwater Freshwater Lake Freshwater Lentic Freshwater Freshwater, Plankton Freshwater Lake Freshwater Freshwater Estuary Water Estuarine Estuarine Deep Subsurface |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
B570J40625_1008973742 | 3300002835 | Freshwater | GRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN* |
JGI25910J50241_100111481 | 3300003388 | Freshwater Lake | VVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
JGI25920J50251_100662681 | 3300003404 | Freshwater Lake | MMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN* |
JGI25914J50564_100311753 | 3300003429 | Freshwater Lake | VMPSPGGRFGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN* |
JGI25914J50564_100826771 | 3300003429 | Freshwater Lake | PSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN* |
JGI25919J51413_10154132 | 3300003488 | Freshwater Lake | GRFGRISMELTGSSGQYYAESLKIEAVKGFYSQFLLENLFGN* |
Ga0007745_10003514 | 3300004765 | Freshwater Lake | SPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0007744_13240721 | 3300004784 | Freshwater Lake | PGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0007742_110808872 | 3300004788 | Freshwater Lake | QKPLANIFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEANQGFYSQFLLENLFGN* |
Ga0007757_115044532 | 3300004810 | Freshwater Lake | QLQKPLANIFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN* |
Ga0007759_102697413 | 3300004836 | Freshwater Lake | LRFFQQQKLLANIFYMMEYPWEAVMSSPGGRFGRISMELTGSSGQYYAESLKIEAVKGFYSQFLLENLFGN* |
Ga0049083_101854481 | 3300005580 | Freshwater Lentic | IPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN* |
Ga0049085_101802671 | 3300005583 | Freshwater Lentic | PSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0078894_106475111 | 3300005662 | Freshwater Lake | FYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0078894_107628321 | 3300005662 | Freshwater Lake | FYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN* |
Ga0102873_10664062 | 3300007545 | Estuarine | GGRFGRISMELTDSSGQYYAESLKIMAYQGFYSQFLLENLFGN* |
Ga0102913_10459282 | 3300007560 | Estuarine | RISMELTGSSGQYYAESLKINAYLGFYSQFLLENLFGN* |
Ga0102915_10319234 | 3300007562 | Estuarine | WEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN* |
Ga0102917_10338114 | 3300007590 | Estuarine | LANIFYMMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN* |
Ga0102917_11860292 | 3300007590 | Estuarine | GRFGRISMELTGSSGQYYAESLKIKGYRASWPRFFLENLFGN* |
Ga0102920_10274591 | 3300007600 | Estuarine | PSPGGRFGRISMELTGSSGQYYAESLKIEAVKGFYSQFLLENLFGN* |
Ga0102872_10241544 | 3300007621 | Estuarine | GRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0102872_10569171 | 3300007621 | Estuarine | PSPGGRFGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN* |
Ga0102863_10229101 | 3300007622 | Estuarine | IFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0102863_11648381 | 3300007622 | Estuarine | IFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN* |
Ga0102902_10857161 | 3300007644 | Estuarine | IFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAVKGFYSQFLLENLFGN* |
Ga0102900_10034471 | 3300007651 | Estuarine | ELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0102868_10787401 | 3300007653 | Estuarine | QQQKLLANIFYMMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKAYLGFYSQFLLENLFGN* |
Ga0102867_10012901 | 3300007716 | Estuarine | WEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0102867_11798251 | 3300007716 | Estuarine | MMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN* |
Ga0105747_10076295 | 3300007974 | Estuary Water | MEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAVKGFYSQFLLENLFGN* |
Ga0102922_10383503 | 3300008021 | Estuarine | GRISMELTDSSGQYYAESLKIMAYQGFYSQFLLENLFGN* |
Ga0114841_10629474 | 3300008259 | Freshwater, Plankton | MMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0114841_10940841 | 3300008259 | Freshwater, Plankton | MMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN* |
Ga0102864_10790652 | 3300009051 | Estuarine | PWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0102830_10211651 | 3300009059 | Estuarine | NTQNLRFFQQQKLLANIVYMMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIEAVKGFYSQFLLENLFGN* |
Ga0114981_101071921 | 3300009160 | Freshwater Lake | VMPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN* |
Ga0157555_10538901 | 3300012705 | Freshwater | RFGRISMELTGSSGQYYAESLKMKGYRASWPRFLLENLFGN* |
Ga0157544_10154451 | 3300012713 | Freshwater | RISMELTGSSGQYYAESLKMKGYRASWPRFLLENLFGN* |
Ga0157605_10538882 | 3300012716 | Freshwater | GRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0157630_10297711 | 3300012722 | Freshwater | YPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0157604_12938812 | 3300012723 | Freshwater | WEAVMPSPGGRFGRISMELTGSSGQYYAESLKIMVYQGFYSQFLLENLFGN* |
Ga0157531_12526571 | 3300012727 | Freshwater | MELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0157553_11021182 | 3300012748 | Freshwater | RFYLQRKPLANIFYMMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0138281_10752101 | 3300012755 | Freshwater Lake | VMPSPGGRVGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN* |
Ga0138282_11185441 | 3300012766 | Freshwater Lake | QKPLANIFYMMEYPWEAVMPSPGGRFGRISMELTGSSGHYYAESLKIKGYRASWPRFLLENLFGN* |
Ga0138287_10481061 | 3300012772 | Freshwater Lake | AVMPSPGGRFGRISMELTGSSGQYYAESLKMKGYRASWPRFLLENLFGN* |
Ga0164294_104026612 | 3300013006 | Freshwater | YMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN* |
Ga0157526_10765621 | 3300013077 | Freshwater | QNSRFCQQQKPLANIFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN* |
Ga0208088_10063001 | 3300020505 | Freshwater | GRFGRISMELTGSSGQYYAESLKIEAVKGFYSQFLLENLFGN |
Ga0208091_10353112 | 3300020506 | Freshwater | QQKPLANIFYMMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN |
Ga0208224_10459101 | 3300020528 | Freshwater | VIPSPGGRFGRISMELTGSSGQYYAESLKIVAYQGFYSQFLLENLFGN |
Ga0208235_10265542 | 3300020530 | Freshwater | GGRFGRISMELMGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0207937_10274061 | 3300020544 | Freshwater | ISMELTGSSGQYYAESLKIEAVRGFYSQFLLENLFGN |
Ga0208053_10044216 | 3300020575 | Freshwater | NSRFCQQQKPLANIFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0244777_100101001 | 3300024343 | Estuarine | GGRFGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN |
Ga0244775_102000961 | 3300024346 | Estuarine | GGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0244775_110454041 | 3300024346 | Estuarine | PLANIFYMMEYHWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN |
Ga0255228_10212111 | 3300024531 | Freshwater | IPSPGGRFGRISMELAGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0256299_10096291 | 3300024533 | Freshwater | SPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0256307_11374551 | 3300024567 | Freshwater | IPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLFENLFGN |
Ga0255238_10276021 | 3300024568 | Freshwater | LANIFYMMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0255243_11308921 | 3300024569 | Freshwater | KPLANIFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAVKGFYSQFLLENLFGN |
Ga0256302_10149861 | 3300024571 | Freshwater | PSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0255229_10061614 | 3300024848 | Freshwater | KPLANIFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0255245_10036544 | 3300025744 | Freshwater | RISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0256313_10038844 | 3300025757 | Freshwater | QNSRFCQQQKPLANIFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0256298_10082682 | 3300026415 | Freshwater | MEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKMKGYRASWPRFLLENLFGN |
Ga0255253_10117202 | 3300026429 | Freshwater | FGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0256303_10235882 | 3300026567 | Freshwater | EYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0255099_10074981 | 3300027128 | Freshwater | IFYMMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN |
Ga0255066_10000867 | 3300027131 | Freshwater | MELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0255064_10009451 | 3300027138 | Freshwater | SMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN |
Ga0208802_10468131 | 3300027210 | Estuarine | SMELTGSSGQYYAESLKINAYLGFYSQFLLENLFGN |
Ga0208555_10132471 | 3300027213 | Estuarine | YPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0208808_10034881 | 3300027238 | Estuarine | GGRFGRISMELTGSSGQYYAESLKIEAVKGFYSQFLLENLFGN |
Ga0255134_10314422 | 3300027292 | Freshwater | CQLQKPLANIFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0208441_10091601 | 3300027294 | Estuarine | ISMELTGSSGQYYAESLKIEAVKGFYSQFLLENLFGN |
Ga0255124_10677111 | 3300027299 | Freshwater | SMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0255140_10211661 | 3300027300 | Freshwater | NIFYMMEYPWEVVIPSPGGRFGRISMELTRSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0208787_10828312 | 3300027518 | Deep Subsurface | VVIPSPGGRFGRISMELTGSSGQYYAESLKIEANQGFYSQFLLENLFGN |
Ga0255118_10516481 | 3300027593 | Freshwater | GRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0255121_10394482 | 3300027598 | Freshwater | VVIPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0209135_11265272 | 3300027642 | Freshwater Lake | MELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN |
Ga0209356_10368221 | 3300027644 | Freshwater Lake | PWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0209357_10883842 | 3300027656 | Freshwater Lake | WEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0209357_10989531 | 3300027656 | Freshwater Lake | WEVVIPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0209769_10351591 | 3300027679 | Freshwater Lake | PWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0209553_10985022 | 3300027688 | Freshwater Lake | VMPSPGGRFGRISMELTGSSGQYYAESLKIKAYLGFYSQFLLENLFGN |
Ga0209551_10351681 | 3300027689 | Freshwater Lake | EYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0209443_11023611 | 3300027707 | Freshwater Lake | IFYMMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0209087_12915502 | 3300027734 | Freshwater Lake | PQRKPLANIFYMMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN |
Ga0209444_100583041 | 3300027756 | Freshwater Lake | QKLLANIFYMMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0209770_100518444 | 3300027769 | Freshwater Lake | FYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0209500_104335962 | 3300027782 | Freshwater Lake | EYPWEAVMPIPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0255261_10142951 | 3300028097 | Freshwater | PLANIFYMMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0315908_101907541 | 3300031786 | Freshwater | FYMMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0315905_102394751 | 3300032092 | Freshwater | EAVMPSPGGRFGRISMELTGSSGQYYAESLKIMVYQCFYSQFLLENLFGN |
Ga0335003_0293410_610_732 | 3300033995 | Freshwater | FGRISMELTGSSGQYYAESLKIMAYQGFYSQFLLENLFGN |
Ga0334985_0391917_567_737 | 3300034018 | Freshwater | MMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIEAIKGFYSQFLLENLFGN |
Ga0335019_0149515_1358_1528 | 3300034066 | Freshwater | MMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN |
Ga0335028_0025311_12_182 | 3300034071 | Freshwater | MMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIMAYQGFYSQFLLENLFGN |
Ga0335022_0309760_6_176 | 3300034095 | Freshwater | MMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIKAYLVFYSQFLLENLFGN |
Ga0335066_0100540_1617_1787 | 3300034112 | Freshwater | MMEYPWEAVMPSPGGRFGRISMELTGSSGQYYAESLKIMFYQGFYSQFLLENLFGN |
Ga0335054_0192141_1052_1222 | 3300034119 | Freshwater | MMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESLKIKGYRASWPRFLLENLFGN |
Ga0335058_0310667_587_757 | 3300034121 | Freshwater | MMEYPWEVVIPSPGGRFGRISMELTGSSGQYYAESFKIKAYLVFYSQFLLENLFGN |
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