Metagenome / Metatranscriptome Family F093238

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Overview

Basic Information
Family ID	F093238
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	77 residues
Representative Sequence	IVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Number of Associated Samples	77
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.66 %
% of genes near scaffold ends (potentially truncated)	91.51 %
% of genes from short scaffolds (< 2000 bps)	98.11 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (33.962 % of family members)
Environment Ontology (ENVO)	Unclassified (79.245 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (76.415 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98. 1TBL_comb48_EPIDRAFT_10493671 2TBL_comb48_EPIDRAFT_10581751 3JGI12547J11936_10452861 4JGI12547J11936_11012772 5JGI12421J11937_101448392 6B570J29032_1092912801 7Ga0007827_100536101 8Ga0007827_101543431 9Ga0007801_101299801 10Ga0007801_102216912 11Ga0007854_104136801 12Ga0007809_101876161 13Ga0071350_11694192 14Ga0068877_107939972 15Ga0068876_102982841 16Ga0068872_105179472 17Ga0007876_10754534 18Ga0007876_10993731 19Ga0007881_11036381 20Ga0007806_10446661 21Ga0007882_100888014 22Ga0007882_101656913 23Ga0007833_10500013 24Ga0007816_10194731 25Ga0007807_10675401 26Ga0007807_10692671 27Ga0007824_10894561 28Ga0007855_10893981 29Ga0114338_12716752 30Ga0114338_12764932 31Ga0114339_11303111 32Ga0114339_11570311 33Ga0114341_102250774 34Ga0114342_10947291 35Ga0114342_11044251 36Ga0114352_10209844 37Ga0114352_10741271 38Ga0114352_11215402 39Ga0114359_13148942 40Ga0114972_102621681 41Ga0157565_10365691 42Ga0157569_10525043 43Ga0157571_10830101 44Ga0157574_11987114 45Ga0157612_10554172 46Ga0157610_10865293 47Ga0157564_10560172 48Ga0164293_107904601 49Ga0164292_105047093 50Ga0164292_105206471 51Ga0164292_108091771 52Ga0164292_110347051 53Ga0164296_11637851 54Ga0164297_101834621 55Ga0164297_101966921 56Ga0164297_102827433 57Ga0164297_104314151 58Ga0214197_10069804 59Ga0214190_10310411 60Ga0214178_10187893 61Ga0214246_10376553 62Ga0214201_10271953 63Ga0214196_10249933 64Ga0214171_10525162 65Ga0214164_10537521 66Ga0214164_10539273 67Ga0214192_11418641 68Ga0247724_10227043 69Ga0247724_10484792 70Ga0208502_10140732 71Ga0208871_10218271 72Ga0208865_10600192 73Ga0208622_10356581 74Ga0208106_10531451 75Ga0208389_10117357 76Ga0208105_10392373 77Ga0208105_10428641 78Ga0208105_10828572 79Ga0208379_11476571 80Ga0208741_101677341 81Ga0208258_10501102 82Ga0208788_11480422 83Ga0209617_102355471 84Ga0209990_103853152 85Ga0316219_11495001 86Ga0316218_11184661 87Ga0316229_12540872 88Ga0334994_0267155_627_884 89Ga0334994_0438307_313_594 90Ga0334986_0368702_562_738 91Ga0334985_0354034_674_895 92Ga0335002_0402728_3_188 93Ga0334987_0062514_68_349 94Ga0334995_0636087_55_336 95Ga0335028_0148677_2_199 96Ga0335050_0319921_67_348 97Ga0335053_0359995_688_894 98Ga0335053_0387531_30_194 99Ga0335053_0614943_3_266 100Ga0335053_0750732_288_542 101Ga0335049_0393901_2_274 102Ga0335049_0449291_3_212 103Ga0335049_0450087_620_829 104Ga0335052_0470831_12_293 105Ga0335013_0470308_484_756 106Ga0335013_0687625_363_584
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98. 1TBL_comb48_EPIDRAFT_10493671 2JGI12547J11936_10452861 3Ga0247724_10227043
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98. 1TBL_comb48_EPIDRAFT_10493671 2JGI12547J11936_10452861 3Ga0247724_10227043
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.38% β-sheet: 0.00% Coil/Unstructured: 34.62%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000439\|TBL_comb48_EPIDRAFT_1049367	Not Available	1512	Open in IMG/M
3300000439\|TBL_comb48_EPIDRAFT_1058175	Not Available	1309	Open in IMG/M
3300000736\|JGI12547J11936_1045286	Not Available	913	Open in IMG/M
3300000736\|JGI12547J11936_1101277	Not Available	518	Open in IMG/M
3300000756\|JGI12421J11937_10144839	Not Available	593	Open in IMG/M
3300002408\|B570J29032_109291280	Not Available	674	Open in IMG/M
3300004777\|Ga0007827_10053610	Not Available	933	Open in IMG/M
3300004777\|Ga0007827_10154343	Not Available	511	Open in IMG/M
3300004802\|Ga0007801_10129980	Not Available	722	Open in IMG/M
3300004802\|Ga0007801_10221691	Not Available	529	Open in IMG/M

Showing 1 to 10 of 106 entries

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Environmental Properties

Associated Habitat Types

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Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.17%
Terrestrial	Environmental → Terrestrial	2.83%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.83%
Freshwater	Environmental → Aquatic → Freshwater	97.17%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	45.28%
Lentic	Environmental → Aquatic → Freshwater → Lentic	51.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.83%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	13.21%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	4.72%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	45.28%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	33.02%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.83%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.94%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.89%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	33.96%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	29.25%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	10.38%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	3.77%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater	0.94%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	2.83%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.94%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	3.77%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.94%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	10.38%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000439	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300000736	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300004777	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07	Environmental	Open in IMG/M
3300004802	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M	Environmental	Open in IMG/M
3300004806	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08	Environmental	Open in IMG/M
3300004807	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07	Environmental	Open in IMG/M
3300005069	Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 77 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TBL_comb48_EPIDRAFT_10493671	3300000439	Freshwater	MGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF*
TBL_comb48_EPIDRAFT_10581751	3300000439	Freshwater	IDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
JGI12547J11936_10452861	3300000736	Freshwater And Sediment	IKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF
JGI12547J11936_11012772	3300000736	Freshwater And Sediment	KTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
JGI12421J11937_101448392	3300000756	Freshwater And Sediment	SKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF*
B570J29032_1092912801	3300002408	Freshwater	VARTIQPEIVIDLEKLEEIDISKTSGIKRELLTIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF*
Ga0007827_100536101	3300004777	Freshwater	RIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0007827_101543431	3300004777	Freshwater	PVARTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF*
Ga0007801_101299801	3300004802	Freshwater	VARTIQPEIVIDLEKLEEIDISKTSGIKRELLTIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKAKLNF*
Ga0007801_102216912	3300004802	Freshwater	LMGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLMIAKNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0007854_104136801	3300004806	Freshwater	EEIDISKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF*
Ga0007809_101876161	3300004807	Freshwater	ELLIIARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF*
Ga0071350_11694192	3300005069	Freshwater	IQPEIVIDLEKLEEIDISKISGIKRELLIIARNRAIRQLQINIDDLVNGDQTQSELQKFRKIQDALKRVKAIDPSWKVKLNF*
Ga0068877_107939972	3300005525	Freshwater Lake	PRIPVAKTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLHF*
Ga0068876_102982841	3300005527	Freshwater Lake	LMGIPRIPVAKTIQPEIIIDLEKLEEIDISKTSGIKRELLMIARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF*
Ga0068872_105179472	3300005528	Freshwater Lake	EKLEEIDISKTSGIKRELLTIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF*
Ga0007876_10754534	3300006071	Freshwater	RNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0007876_10993731	3300006071	Freshwater	RTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0007881_11036381	3300006072	Freshwater	ISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0007806_10446661	3300006100	Freshwater	MIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0007882_100888014	3300006104	Freshwater	ISKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0007882_101656913	3300006104	Freshwater	EEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0007833_10500013	3300006106	Freshwater	EKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0007816_10194731	3300006115	Freshwater	EIDISKTSGIKRELLMIARNRAVRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKTIDPSWKVKLNF*
Ga0007807_10675401	3300006116	Freshwater	ISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0007807_10692671	3300006116	Freshwater	QPEIVIDLEKLEEIDISKTSGIKRELLMIAKNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDALKRVKAIDPSWKVKLHF*
Ga0007824_10894561	3300006121	Freshwater	TIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0007855_10893981	3300006126	Freshwater	MGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLIIDRNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF*
Ga0114338_12716752	3300008105	Freshwater, Plankton	DLMGIPRIPVAKTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKIKLNF*
Ga0114338_12764932	3300008105	Freshwater, Plankton	DLMGIPRIPVAKTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLHF*
Ga0114339_11303111	3300008106	Freshwater, Plankton	EKLEEIDISKTSGIKRELLMIARNRAIRQLQRNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF*
Ga0114339_11570311	3300008106	Freshwater, Plankton	IDLEKLEEIDISKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF*
Ga0114341_102250774	3300008108	Freshwater, Plankton	VIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLHF*
Ga0114342_10947291	3300008109	Freshwater, Plankton	MIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF*
Ga0114342_11044251	3300008109	Freshwater, Plankton	LLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0114352_10209844	3300008118	Freshwater, Plankton	RDVMGIPRIPVAKTIQPEIVIDLEKLEEVDISKTNGIKRELLIIARNRAIRQLQKNIEDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF*
Ga0114352_10741271	3300008118	Freshwater, Plankton	IQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLHF*
Ga0114352_11215402	3300008118	Freshwater, Plankton	TIQPEIVIDLEKLEEIDISKTSGIKRELLTIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKTIDPSWKVKLNF*
Ga0114359_13148942	3300008122	Freshwater, Plankton	SGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKIKLHF*
Ga0114972_102621681	3300009187	Freshwater Lake	TDLRDLMGIPRIPVAKTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRTIRQLQKNIDDLVNDDQTQSELQKFRKIQDTLRRVKAIDPSWKVKLNF*
Ga0157565_10365691	3300012689	Freshwater	RELLIIARNRTIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLHF*
Ga0157569_10525043	3300012691	Freshwater	EKLEEIDISKTSGIKRELLTIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF*
Ga0157571_10830101	3300012692	Freshwater	LEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF*
Ga0157574_11987114	3300012704	Freshwater	ARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF*
Ga0157612_10554172	3300012721	Freshwater	EEIDISKISGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF*
Ga0157610_10865293	3300012725	Freshwater	ARTIQPEMIIDLEKLEEIDISKASGIKRELLIIARNRTIRQLQRNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0157564_10560172	3300012747	Freshwater	MGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRMIRQLQKNIDELVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0164293_107904601	3300013004	Freshwater	KRELLIIARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0164292_105047093	3300013005	Freshwater	LRDLMGIPRIPVARTIQPEIVIDLEKLEEVDISKTSGIKRELLIIARNWTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0164292_105206471	3300013005	Freshwater	PRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0164292_108091771	3300013005	Freshwater	RTIQPEIVIDLEKLEEIDISKTSGIKRELLMIAKNRAIRKLQKNIDDLVNGDQTQSELQKFRKVQDSLKRVKAIDPSWKVKLHF*
Ga0164292_110347051	3300013005	Freshwater	VAKTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLHF*
Ga0164296_11637851	3300013093	Freshwater	IVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0164297_101834621	3300013094	Freshwater	IQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0164297_101966921	3300013094	Freshwater	PRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLIIVRNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0164297_102827433	3300013094	Freshwater	TSGIKRELLIIARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0164297_104314151	3300013094	Freshwater	IVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF*
Ga0214197_10069804	3300020694	Freshwater	ISKTSGIKKELLIIARNRAIRQLQKNIDDLFKGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0214190_10310411	3300020695	Freshwater	IARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0214178_10187893	3300020718	Freshwater	ISKTSGIKRELLIIARNRAIRQLQKNIDDLVKGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0214246_10376553	3300020727	Freshwater	EIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0214201_10271953	3300020732	Freshwater	IKRELLMIARNRAIRQLQKNIDDLVKGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0214196_10249933	3300021132	Freshwater	DISKTSGIKRELLMIARNRTIRQLQKNIDDLVSGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0214171_10525162	3300021134	Freshwater	GIPRIPVARTIQPEIVLDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSLKVKLNF
Ga0214164_10537521	3300021138	Freshwater	IPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0214164_10539273	3300021138	Freshwater	IPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKTIDPSWKVKLNF
Ga0214192_11418641	3300021142	Freshwater	ELLTIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0247724_10227043	3300024239	Deep Subsurface Sediment	VQFRPFQPEIVIDLEKLEEISIEKATGIRKELLIIAKNQTIRQLQKDINDLIDGNQTQSELQKFRKIQDVLIKLKAMDPSWRVKLKF
Ga0247724_10484792	3300024239	Deep Subsurface Sediment	GIPRIPVAKTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRAIRQLQRNIDDLVNGDQTQSELQKFRKVQDSLKRVKAIDPSWKVKLHF
Ga0208502_10140732	3300025339	Freshwater	PRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRTIRQLQKSIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0208871_10218271	3300025381	Freshwater	ARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0208865_10600192	3300025411	Freshwater	LRDLMGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0208622_10356581	3300025430	Freshwater	KRELLIIARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0208106_10531451	3300025449	Freshwater	ELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0208389_10117357	3300025470	Freshwater	DISKTSGIKRELLIIARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0208105_10392373	3300025487	Freshwater	KTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLHF
Ga0208105_10428641	3300025487	Freshwater	SKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0208105_10828572	3300025487	Freshwater	TDLRDLMGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRAIRQLQKNIDDLVNDDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLHF
Ga0208379_11476571	3300025598	Freshwater	IPVSKTIQPEIVINLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF
Ga0208741_101677341	3300025723	Freshwater	VIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF
Ga0208258_10501102	3300025783	Freshwater	PRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0208788_11480422	3300027499	Deep Subsurface	ARNRAIRQLQRNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0209617_102355471	3300027720	Freshwater And Sediment	EEIDISKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLNF
Ga0209990_103853152	3300027816	Freshwater Lake	IDLEKLEEIDISKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKIKLNF
Ga0316219_11495001	3300031759	Freshwater	RDLMGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLTIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0316218_11184661	3300032117	Freshwater	EKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0316229_12540872	3300032676	Freshwater	IQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0334994_0267155_627_884	3300033993	Freshwater	ARTIQPEIVIDLEKLEEIDISKTSGIKRELLTIARNRTIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLHF
Ga0334994_0438307_313_594	3300033993	Freshwater	MGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0334986_0368702_562_738	3300034012	Freshwater	KELLIIARNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0334985_0354034_674_895	3300034018	Freshwater	EKLEEIDISKTSGIKRELLTIARNRAIRQLQKNVDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLHF
Ga0335002_0402728_3_188	3300034020	Freshwater	GIKRELLMIVRNRTIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLN
Ga0334987_0062514_68_349	3300034061	Freshwater	MGIPRIPVARIIQPEIVIDLEKLEEIDISKTSGIKRELLIIARNRTIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLHF
Ga0334995_0636087_55_336	3300034062	Freshwater	MGIPRIPVAKTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLHF
Ga0335028_0148677_2_199	3300034071	Freshwater	SKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLHF
Ga0335050_0319921_67_348	3300034108	Freshwater	MGIPRIPVAKTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0335053_0359995_688_894	3300034118	Freshwater	IDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0335053_0387531_30_194	3300034118	Freshwater	MIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0335053_0614943_3_266	3300034118	Freshwater	PVARTIQPEIVIDLEKLEEIDISKTSGIKRELLTIARNRTIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLHF
Ga0335053_0750732_288_542	3300034118	Freshwater	RTIQPEIVIDLEKLEEIDISKTSGIKRELLMIAKNRAIRKLQKNIDDLVNGDQTQSELQKFRKVQDSLKRVKAIDPSWKVKLHF
Ga0335049_0393901_2_274	3300034272	Freshwater	PRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLTIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0335049_0449291_3_212	3300034272	Freshwater	EIDISKTSGIKRELLTIARNRAIRQLQKNVDDLVNGDQTQSELQKFRKIQDSLKRVKAIDPSWKVKLHF
Ga0335049_0450087_620_829	3300034272	Freshwater	EIDISKTSGIKRELLTIARNRAIRQLQKNVDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLHF
Ga0335052_0470831_12_293	3300034279	Freshwater	MGIPRIPIARAIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVSGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF
Ga0335013_0470308_484_756	3300034284	Freshwater	PRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLMIAKNRAIRKLQKNIDDLVNGDQTQSELQKFRKVQDSLKRVKAIDPSWKVKLHF
Ga0335013_0687625_363_584	3300034284	Freshwater	EKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKVKLNF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093238

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences