Metagenome / Metatranscriptome Family F093140

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093140
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	81 residues
Representative Sequence	MKTLRQLCVVVVFTLALAIPAFAGEMEIGSPTPPPAQPAQTATLNGDIQTTVTGQEETGSSEATAADSATEIALNLLQSVLSLF
Number of Associated Samples	59
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.91 %
% of genes near scaffold ends (potentially truncated)	20.75 %
% of genes from short scaffolds (< 2000 bps)	69.81 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.321 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (31.132 % of family members)
Environment Ontology (ENVO)	Unclassified (32.075 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.396 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 40.18% β-sheet: 0.00% Coil/Unstructured: 59.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13424	TPR_12	4.72
PF02954	HTH_8	3.77
PF04255	DUF433	1.89
PF02384	N6_Mtase	1.89
PF01656	CbiA	1.89
PF00561	Abhydrolase_1	0.94
PF06056	Terminase_5	0.94
PF13946	DUF4214	0.94
PF01507	PAPS_reduct	0.94
PF09559	Cas6	0.94
PF01610	DDE_Tnp_ISL3	0.94
PF10108	DNA_pol_B_exo2	0.94
PF13181	TPR_8	0.94
PF13182	DUF4007	0.94
PF03993	DUF349	0.94
PF05766	NinG	0.94
PF13744	HTH_37	0.94
PF12728	HTH_17	0.94
PF05496	RuvB_N	0.94
PF00665	rve	0.94
PF04434	SWIM	0.94
PF00174	Oxidored_molyb	0.94
PF00578	AhpC-TSA	0.94
PF01979	Amidohydro_1	0.94
PF08843	AbiEii	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	1.89
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.94
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.94
COG2255	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB	Replication, recombination and repair [L]	0.94
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.94
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.94
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.94
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.94
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.94
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.94
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.94
COG4715	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.94
COG5431	Predicted nucleic acid-binding protein, contains SWIM-type Zn-finger domain	General function prediction only [R]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.26 %
Unclassified	root	N/A	37.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.32 %
Unclassified	root	N/A	37.74 %
Viruses	superkingdom	All Organisms → Viruses	0.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.32 %
Unclassified	root	N/A	37.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.74 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	23.58 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	11.32 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.74 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	23.58 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.55 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.94 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.74 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	23.58 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.94 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.94 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.94 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.74 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	23.58 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.94 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.94 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	0.94 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.74 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	23.58 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	0.94 %
Candidatus Thiosymbion	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Candidatus Thiosymbion	0.94 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.94 %
Chroococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.74 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	23.58 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.55 %
Candidatus Thiosymbion oneisti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Candidatus Thiosymbion → Candidatus Thiosymbion oneisti	0.94 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.94 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.94 %
Chroococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003324\|soilH2_10311351	All Organisms → cellular organisms → Bacteria	2060	Open in IMG/M
3300004016\|Ga0058689_10001433	All Organisms → cellular organisms → Bacteria	4771	Open in IMG/M
3300005575\|Ga0066702_10139346	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1426	Open in IMG/M
3300005616\|Ga0068852_102302210	Not Available	560	Open in IMG/M
3300005985\|Ga0081539_10504066	Not Available	501	Open in IMG/M
3300009177\|Ga0105248_12181703	Not Available	630	Open in IMG/M
3300009789\|Ga0126307_10622414	Not Available	871	Open in IMG/M
3300009789\|Ga0126307_11005078	Not Available	674	Open in IMG/M
3300009789\|Ga0126307_11512813	Not Available	544	Open in IMG/M
3300009840\|Ga0126313_10109081	All Organisms → Viruses → Predicted Viral	2046	Open in IMG/M
3300009840\|Ga0126313_10335718	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1188	Open in IMG/M
3300009840\|Ga0126313_11503250	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	559	Open in IMG/M
3300010037\|Ga0126304_10260735	Not Available	1142	Open in IMG/M
3300010037\|Ga0126304_10388367	Not Available	931	Open in IMG/M
3300010038\|Ga0126315_10439720	Not Available	824	Open in IMG/M
3300010038\|Ga0126315_10895280	Not Available	589	Open in IMG/M
3300010039\|Ga0126309_10087669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1577	Open in IMG/M
3300010039\|Ga0126309_10345917	Not Available	874	Open in IMG/M
3300010039\|Ga0126309_10352767	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300010039\|Ga0126309_10520874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300010039\|Ga0126309_11007713	Not Available	560	Open in IMG/M
3300010039\|Ga0126309_11122743	Not Available	535	Open in IMG/M
3300010040\|Ga0126308_10596427	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300010040\|Ga0126308_10606573	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	747	Open in IMG/M
3300010040\|Ga0126308_10812182	Not Available	648	Open in IMG/M
3300010041\|Ga0126312_10448150	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	921	Open in IMG/M
3300010041\|Ga0126312_10462630	Not Available	905	Open in IMG/M
3300010044\|Ga0126310_11784172	Not Available	513	Open in IMG/M
3300010045\|Ga0126311_10000071	All Organisms → cellular organisms → Bacteria	51748	Open in IMG/M
3300010045\|Ga0126311_10000297	All Organisms → cellular organisms → Bacteria	23976	Open in IMG/M
3300010045\|Ga0126311_10002402	All Organisms → cellular organisms → Bacteria → Acidobacteria	9369	Open in IMG/M
3300010045\|Ga0126311_10561317	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	900	Open in IMG/M
3300010045\|Ga0126311_10994123	Not Available	686	Open in IMG/M
3300010045\|Ga0126311_11710124	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	531	Open in IMG/M
3300010166\|Ga0126306_10066852	All Organisms → cellular organisms → Bacteria	2529	Open in IMG/M
3300010166\|Ga0126306_10226142	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300010166\|Ga0126306_10869610	Not Available	730	Open in IMG/M
3300010166\|Ga0126306_10979939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300010166\|Ga0126306_11451959	Not Available	568	Open in IMG/M
3300012093\|Ga0136632_10023011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales	2784	Open in IMG/M
3300012212\|Ga0150985_117169452	Not Available	656	Open in IMG/M
3300012469\|Ga0150984_104322174	Not Available	596	Open in IMG/M
3300012924\|Ga0137413_11320768	Not Available	580	Open in IMG/M
3300014487\|Ga0182000_10000371	All Organisms → cellular organisms → Bacteria	7628	Open in IMG/M
3300014487\|Ga0182000_10001274	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	4748	Open in IMG/M
3300014487\|Ga0182000_10002235	All Organisms → cellular organisms → Bacteria	3898	Open in IMG/M
3300014487\|Ga0182000_10006876	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2629	Open in IMG/M
3300014488\|Ga0182001_10015968	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1693	Open in IMG/M
3300014488\|Ga0182001_10451971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300015242\|Ga0137412_10922307	Not Available	631	Open in IMG/M
3300017789\|Ga0136617_10296566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1332	Open in IMG/M
3300018432\|Ga0190275_10182457	Not Available	1968	Open in IMG/M
3300018466\|Ga0190268_11637419	Not Available	569	Open in IMG/M
3300018920\|Ga0190273_11419193	Not Available	608	Open in IMG/M
3300018946\|Ga0193599_1000929	All Organisms → cellular organisms → Bacteria	12076	Open in IMG/M
3300019767\|Ga0190267_10376207	Not Available	779	Open in IMG/M
3300019767\|Ga0190267_10718843	Not Available	646	Open in IMG/M
3300019767\|Ga0190267_11445563	Not Available	525	Open in IMG/M
3300020146\|Ga0196977_1000073	All Organisms → cellular organisms → Bacteria	69671	Open in IMG/M
3300020146\|Ga0196977_1038376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1151	Open in IMG/M
3300020146\|Ga0196977_1051666	Not Available	978	Open in IMG/M
3300020146\|Ga0196977_1089320	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	718	Open in IMG/M
3300020146\|Ga0196977_1098452	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	678	Open in IMG/M
3300021067\|Ga0196978_1000040	All Organisms → cellular organisms → Bacteria	64508	Open in IMG/M
3300021384\|Ga0213876_10000035	All Organisms → cellular organisms → Bacteria	186618	Open in IMG/M
3300021384\|Ga0213876_10000097	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	99326	Open in IMG/M
3300021384\|Ga0213876_10011935	All Organisms → cellular organisms → Bacteria	4629	Open in IMG/M
3300024430\|Ga0196962_10209415	Not Available	628	Open in IMG/M
3300025945\|Ga0207679_11938177	Not Available	537	Open in IMG/M
3300027119\|Ga0209522_1034639	Not Available	621	Open in IMG/M
3300027750\|Ga0209461_10001238	All Organisms → cellular organisms → Bacteria	5008	Open in IMG/M
3300028794\|Ga0307515_10274227	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1403	Open in IMG/M
3300030496\|Ga0268240_10102074	Not Available	672	Open in IMG/M
3300030510\|Ga0268243_1004690	All Organisms → cellular organisms → Bacteria	2372	Open in IMG/M
3300030510\|Ga0268243_1006288	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2100	Open in IMG/M
3300030510\|Ga0268243_1026031	Not Available	1181	Open in IMG/M
3300031003\|Ga0074003_13993403	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300031740\|Ga0307468_100301081	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1164	Open in IMG/M
3300032159\|Ga0268251_10498186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300034000\|Ga0334918_004315	All Organisms → cellular organisms → Bacteria	1930	Open in IMG/M
3300034000\|Ga0334918_018731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Candidatus Thiosymbion → Candidatus Thiosymbion oneisti	957	Open in IMG/M
3300034000\|Ga0334918_063561	Not Available	524	Open in IMG/M
3300034001\|Ga0334919_043530	Not Available	740	Open in IMG/M
3300034002\|Ga0334920_000173	All Organisms → cellular organisms → Bacteria	27937	Open in IMG/M
3300034002\|Ga0334920_000397	All Organisms → cellular organisms → Bacteria	19302	Open in IMG/M
3300034005\|Ga0334930_005379	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1878	Open in IMG/M
3300034006\|Ga0334934_011065	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300034007\|Ga0334936_007283	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2621	Open in IMG/M
3300034007\|Ga0334936_008735	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2334	Open in IMG/M
3300034009\|Ga0334944_058164	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	734	Open in IMG/M
3300034009\|Ga0334944_069687	Not Available	665	Open in IMG/M
3300034026\|Ga0334946_000038	All Organisms → cellular organisms → Bacteria	120382	Open in IMG/M
3300034026\|Ga0334946_000063	All Organisms → cellular organisms → Bacteria	78506	Open in IMG/M
3300034026\|Ga0334946_005865	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1906	Open in IMG/M
3300034026\|Ga0334946_024927	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	986	Open in IMG/M
3300034027\|Ga0334949_068254	Not Available	970	Open in IMG/M
3300034030\|Ga0334952_000073	All Organisms → cellular organisms → Bacteria	61856	Open in IMG/M
3300034135\|Ga0334929_000510	All Organisms → cellular organisms → Bacteria	12129	Open in IMG/M
3300034137\|Ga0334943_035534	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	944	Open in IMG/M
3300034145\|Ga0334963_006873	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2089	Open in IMG/M
3300034145\|Ga0334963_027579	Not Available	901	Open in IMG/M
3300034173\|Ga0334925_000522	All Organisms → cellular organisms → Bacteria → Acidobacteria	12676	Open in IMG/M
3300034173\|Ga0334925_000919	All Organisms → cellular organisms → Bacteria → Acidobacteria	8014	Open in IMG/M
3300034221\|Ga0334937_015272	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1959	Open in IMG/M
3300034391\|Ga0334917_109919	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	534	Open in IMG/M
3300034779\|Ga0334945_032420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	872	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.74%
Host-Associated	Host-Associated	12.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.85%
Plants	Host-Associated → Plants	12.26%
Aquatic	Environmental → Aquatic	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.85%
Roots	Host-Associated → Plants → Roots	3.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.83%
Freshwater	Environmental → Aquatic → Freshwater	1.89%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.89%
Phylloplane	Host-Associated → Plants → Phylloplane	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.32%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	16.04%
Sand	Environmental → Terrestrial → Soil → Sand	7.55%
Unclassified	Host-Associated → Plants → Roots → Unclassified	3.77%
Ice	Environmental → Aquatic → Freshwater → Ice	1.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.89%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.89%
Loam	Environmental → Terrestrial → Soil → Loam	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.11%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	16.04%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	9.43%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	7.55%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	31.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.43%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	9.43%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	9.43%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	6.60%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.66%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	2.83%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.89%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.89%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.94%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300018946	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020146	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C	Environmental	Open in IMG/M
3300021067	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027119	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031003	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034000	Biocrust microbial communities from Mojave Desert, California, United States - 14HMC	Environmental	Open in IMG/M
3300034001	Biocrust microbial communities from Mojave Desert, California, United States - 15HMC	Environmental	Open in IMG/M
3300034002	Biocrust microbial communities from Mojave Desert, California, United States - 16HMC	Environmental	Open in IMG/M
3300034005	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 26HNS	Environmental	Open in IMG/M
3300034006	Biocrust microbial communities from Mojave Desert, California, United States - 30SMC	Environmental	Open in IMG/M
3300034007	Biocrust microbial communities from Mojave Desert, California, United States - 32SMC	Environmental	Open in IMG/M
3300034009	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 40SMS	Environmental	Open in IMG/M
3300034026	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS	Environmental	Open in IMG/M
3300034027	Biocrust microbial communities from Mojave Desert, California, United States - 45SNC	Environmental	Open in IMG/M
3300034030	Biocrust microbial communities from Mojave Desert, California, United States - 48SNC	Environmental	Open in IMG/M
3300034135	Biocrust microbial communities from Mojave Desert, California, United States - 25HNC	Environmental	Open in IMG/M
3300034137	Biocrust microbial communities from Mojave Desert, California, United States - 39SMC	Environmental	Open in IMG/M
3300034145	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS	Environmental	Open in IMG/M
3300034173	Biocrust microbial communities from Mojave Desert, California, United States - 21HNC	Environmental	Open in IMG/M
3300034221	Biocrust microbial communities from Mojave Desert, California, United States - 33SMC	Environmental	Open in IMG/M
3300034391	Biocrust microbial communities from Mojave Desert, California, United States - 13HMC	Environmental	Open in IMG/M
3300034779	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 41SMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
soilH2_103113515	3300003324	Sugarcane Root And Bulk Soil	MKTLRRLCVALVFTFALALPTFAGEITTMIAPPPAQLPQAATTQGEISTPVAGQVDTGSGEATTADSATEVALNLLQSLLALF*
Ga0058689_100014337	3300004016	Agave	VKTLRQLCVAVVFTFALSISTFAGEIEITKTAPPPTQLATANGDIQTGITGQEETSSGEATTTDSAAEIALNLLQSVLSLF*
Ga0066702_101393461	3300005575	Soil	MKNIGRLSVALVFTFALISPAFAGEISTPLAPPPPAQSAQATTTDGEIDTGLTGQAETGSSETTANNSATEAAMNLLQSVLSLF*
Ga0068852_1023022101	3300005616	Corn Rhizosphere	MKPLRQLCLALVFTFTLALPAFAGEMQTTVAPPQPAQSATAQGEMQTTVTGQEETSSSEATAADSATEIVLNLLQSVLSLF*
Ga0081539_105040661	3300005985	Tabebuia Heterophylla Rhizosphere	FCIALAFTLALTFPAFAGEISTTVAPPPPSQPAQTATVNGEISTTVTGQEETGSSEATAADSATEIALNLLQSVLALF*
Ga0105248_121817031	3300009177	Switchgrass Rhizosphere	MKTLRQFCVVMVFTLALATPAFAGVMEIGSPAPPPSQPQTATVNGEMPIGLTGQEETGSSEATATDSATEIALNLLQSVLSLF*
Ga0126307_106224141	3300009789	Serpentine Soil	RTSLPPPISQQVSQLQENIMKNLRRLCGAVVFTLVLTIPAFAGDIQTPLAPPQPTQSATAQGDIQTTVTGQAETGSSEAIANDSATEIALNLLQSVLSLF*
Ga0126307_110050781	3300009789	Serpentine Soil	MKTLRQFCVAVVFTLALAAPAFAGEMPIGSPTPPPSQPQPVTTSGDIQTTVTGQEETGSSEATAADSATEIALNLLQSVLALF*
Ga0126307_115128132	3300009789	Serpentine Soil	MKTLRQFCVAVVFILALATPAFAGVMEIGSPTPPPPSQPAQTATTNGDIQTTVAGQEET
Ga0126313_101090812	3300009840	Serpentine Soil	MKNLRGLCGALVFTFALTFPTFAGDIQTGVAPPPSQPAQTAALNGDIQTGVTGQAETGSSEAT
Ga0126313_103357182	3300009840	Serpentine Soil	MKTLRQLCVAVVFTLALAVPAFAGEMQIGSPTPPPPSQPAQTATVNGEMQIGLTGQEETGSGEVSATDS
Ga0126313_115032502	3300009840	Serpentine Soil	MKPLRRLCLALVFTFTLALPALAGEMQTTVAPPQPATTQGEMQTTVTGQEETGSSEATATDSATGIALKLLQSVLSLF*
Ga0126304_102607351	3300010037	Serpentine Soil	LALTIPTFAGDIETTIAPPQPAQPATAHGEMQTTVAGQIETPSSEATSTDSATEIALNLLHSVLSLF*
Ga0126304_103883672	3300010037	Serpentine Soil	MKTLRQLCVAVVFTLALAVPAFAGEMHIGSPTPPPPSQPAQTATVNGEMPIGLTGQEETGSGEVSATDSATEAVLNLLQSVLTLF*
Ga0126315_104397202	3300010038	Serpentine Soil	VVFTLALAVPAFAGEMQIGSPTPPPPSQPAQTATVNGEMQIGLTGQEETGSSEVSATDSATEAVLNLLQSVLALF*
Ga0126315_108952801	3300010038	Serpentine Soil	MKTLRQLCVAVVFTLALALPAFAGEMEIGSPTPPPAQPAQTSTANGDIQTTVTGQEETDSSEATAADSATEIALNLLQSVLALF*
Ga0126309_100876692	3300010039	Serpentine Soil	MKNLGRLFCAVVFTLALTIPAFAGDMQTGVAPPSQPQTATLNGDMQTTVTGQAETDSSEATAADSATEIALNLLQSVLALF*
Ga0126309_103459172	3300010039	Serpentine Soil	MKPLRQLCLALVFTFTLALPAFAGEMQTTVAPPQPAQSATTQGEMQTTVTGQEEADSSEATAADSAAEAVLNLLQSVLSLF*
Ga0126309_103527672	3300010039	Serpentine Soil	MKTLRQLCVAVVFTLALTIAAFAGDIQTPAPAPPPAQTATTEGDIQAPLTGQEETGSGEVSATDSATETALNLLQSVLALF*
Ga0126309_105208742	3300010039	Serpentine Soil	MKTLRQLCLALAFTFTLALPAFAGEMQTTIAPPQPAQSATAQGDIETTVTGQEETGSSEATAADSATEIALNLLQSVLALF*
Ga0126309_110077132	3300010039	Serpentine Soil	MKTLRQLCVAVVFTLALAVPAFAGEMHIGSPTTPPPSQPQTATVNGEMEIGLTGQEETGSGEVSATDSATEAVLSLLQSVLALF*
Ga0126309_111227431	3300010039	Serpentine Soil	MMTLRQLCVVVVFTLALAAPAFAGEMPIGSPTTPPSQPQTATVNGEMPIGLTGQEETGSGEVSATDSATGIALNLLQSVLSLF*
Ga0126308_105964272	3300010040	Serpentine Soil	VFTLALTIPAFAGEMETGKTTPPPTPTATTAGEIHTTITGQMDTGSGEATPSDSAMEIALNLLQSVLSLF*
Ga0126308_106065731	3300010040	Serpentine Soil	PPAHHELVSHIQENTMKSLRRLSVALVFTLALTITAFAGEIETTKTSPPPSQPAQTATVNGEIETTVTGQEETGSSEATAADSAAEIALNLLQSVLALF*
Ga0126308_108121821	3300010040	Serpentine Soil	MKTLRQLCVVVVFTLALAIPAFAGEMEIGSPTPPPAQPAQTATLNGDIQTTVTGQEETGSSEATAADSATEIALNLLQSVLSLF*
Ga0126312_104481502	3300010041	Serpentine Soil	MKTLRQLCVAVVFTLALAVPAFAGEMQIGSPTPPPPSQPAQTATVNGEMQIGLTGQEETGSGEVSATDSATEAVLNLLQSVLSLF*
Ga0126312_104626302	3300010041	Serpentine Soil	MKNLGRLFCAVVFTLALTIPAFAGDMQTTVTSPPPAQPQTATLNGDIQTGVTGQAETDSSEATAADSATEIALNLLQSVLALF*
Ga0126310_117841721	3300010044	Serpentine Soil	MKTLRQLCVAVVFTLALAAPAFAGEMQIGSPTPPPPSQPAQTATVNGEMQIGLTGQEETGSSEATAADSATEIALNLLQSVLSLF*
Ga0126311_1000007148	3300010045	Serpentine Soil	MFIFTLALPAFAGEMQTTVAPPQPAQSPTTQGEMQTTVTGQEEADSSEATAADSAMEIALNLLQSVLSLI*
Ga0126311_1000029724	3300010045	Serpentine Soil	MSNLRRISIAFAFTLALTIPAFAGEIETGKTSPPPSQPTQTTTVNGEIETGITGQDETGSGEVSATDSATAAVLNLLQTVLALF*
Ga0126311_100024022	3300010045	Serpentine Soil	MKTLRQLCVAVVFTLALAISTFAGEMEITKTSPPPSQPQTATLNGEMQIGLTGQEETGSGEVSATDSATEAVLNLLQSVLALF*
Ga0126311_105613171	3300010045	Serpentine Soil	MKNLRRLCGAVVFTLALTIPAFAGDIQTPLAPPQPTQSATAQGDIQTTVTGQAETGSSEATASDSATEIALNLLQSVLSLF*
Ga0126311_109941232	3300010045	Serpentine Soil	FCAVVFTLALTIPAFAGDMQTTVTSPPPAQPQTATLNGDIQTGVTGQEETGSSEATATGSATEIALNLLQSVLALF*
Ga0126311_117101242	3300010045	Serpentine Soil	MKSLRQLCVALVFTFALTLPAFAGDIETTVTSPPPAQPAQAATTAGEIHTTVGQEETGSSEATATDSAAE
Ga0126306_100668521	3300010166	Serpentine Soil	TFTLALPALAGEMQTTVAPPQPATTQGEMQTTVTGQEETGSSEATAADSATEIALNMLQSVLSLF*
Ga0126306_102261422	3300010166	Serpentine Soil	MKTLRQLCVAVVFTLALAAPAFAGEMHIGSPTPPPSQPAQTATVNGEMPIGLTGQEETGSGEATATDSATETALNLLQSVLALF*
Ga0126306_108696102	3300010166	Serpentine Soil	MKTLRQLCVASVFTLALTLPAFAGEIETPKTSTPPPAPSAGEMQTTVAGQIEIGSSEATAADSATEITLNLLQSVLSLF*
Ga0126306_109799392	3300010166	Serpentine Soil	MKNLGRLFCAVVFTLALTIPAFAGDMQTGVAPPSQPQTATLNGDMQTTVTGQAETDSSEATAADSATEIALNLLQSVLSLF*
Ga0126306_114519591	3300010166	Serpentine Soil	MKTLRQLLVASVVTFALITPAFAGQMDTMVAPPPTPAAAAEGQMDTTVAGQIETPSSEATAADSAMEIALNLLQSVLALF*
Ga0136632_100230112	3300012093	Polar Desert Sand	MKTLRQLSVASVFVFALAMPAFAGEIQTGIAPPPPPHAATAGQIETGITGHIETGSSEATAIDSATEITLNLLQSVLSLF*
Ga0150985_1171694522	3300012212	Avena Fatua Rhizosphere	MKSLRRLCLALVLTFPLALPALAGEMQTTVAPPQPVQSATAQGEMQTTVTGQEETGSSEATATDSATEIALNLLQSVLSLF*
Ga0150984_1043221741	3300012469	Avena Fatua Rhizosphere	VKYIRQLCVALMFTFALVLPTFAGEISTTIAPPLPAQAATAAGEIHTTVTGQEETGSSEATATDSATEIALNLLQSALSLF*
Ga0137413_113207681	3300012924	Vadose Zone Soil	MKTLRQFCVVVVFTLALAIPASAGVMEIGSPAPPPSQPQTATVNGEMPIGLTGQEETGSGEVSATDSATEAVLNLLQSALSLF*
Ga0182000_100003719	3300014487	Soil	MKPLRQLCLALVFTFTLALPAFAGEMQTTVAPPQPAQSATSQGEMQTTVTGQEEADSSEATATDSATEIALNLLQSVLSLI*
Ga0182000_100012742	3300014487	Soil	MKNLRRLSVALVFTLALTIPAFAGEMDTGRTSPPPSQPAQTASVNGEMDTGLTGQIDTGSSEATAADSAAEIALNLLQSVLALF*
Ga0182000_100022353	3300014487	Soil	MKTLRQLCVASVFVFALAITAFAGEIQTPLAPPPPAQSATAQGEISTGITGQEETGSSEATAADSATEIALNLLQSVLTLF*
Ga0182000_100068762	3300014487	Soil	MKNLRRLSVALVFTLTLTIPAFAGEIDTGKTSPPPSQLSQTATVNGEIDTGLTGQEETGSSEATATDSATKIALNLLQTVLALF*
Ga0182001_100159681	3300014488	Soil	MKTLRQLCVASVFVFSLTFPAFAGEIQTGVAPPPPSQPAQTATPNGDIQTGVTGQAETGSSEATAADSAAEIALNLLQSVLALF*
Ga0182001_104519712	3300014488	Soil	MKSLRRFCVALVFTFALTIPAFAGEITTMVVPPPSQPAQTATAGGDIQTGVTGQEETGRGEATATDSATEIALNL
Ga0137412_109223071	3300015242	Vadose Zone Soil	AIPASAGVMEIGSPAPPPSQPQTATVNGEMPIGLTGQEETGSGEVSATDSATEAVLNLLQSALSLF*
Ga0136617_102965662	3300017789	Polar Desert Sand	MKTLRQLSVASVFVFVLAMPAFAGEISTGIAPPPPPHAATAEQIETGITGQIETDSSEATSADSATEIALNLLQSVLSLF
Ga0190275_101824572	3300018432	Soil	MKTLRQLSVALVFALALTLPGLAGDIETGKTQPPPSTPAAATSEGQIETTVAGQEETGSSETTVADSATEIALNLLQSVLSLF
Ga0190268_116374191	3300018466	Soil	MKTLRQLCVAVVFTLALAAPAFAGEMHIGSPTPPPPSQPAQTATVNGEMPIGLTGQEETGSGEVSATDSATEAALNLLQSVLALF
Ga0190273_114191931	3300018920	Soil	MKTLRQLCVAVVFTLALAAPAFAGEMPIGSPTTPPSQPQTATVNGEMPIGLTGQEETDGGEVSATDSATEAVLSLLQSVLALF
Ga0193599_10009292	3300018946	Soil	MKNLRQLCGAVVFTLALTIPAFAGDIQTGVAPPTPQPTQTATTEGDIGTGVTGHIETGSSEATAVGSAAEVALNLLQSVLALF
Ga0190267_103762072	3300019767	Soil	MKNLGRLFCAVVFTLALTIPAFAGDMQTTVTSPPPAQPQTATLNGDIQTGVTGQAETDNSEATAADSATEIALNLLQSVLSLF
Ga0190267_107188431	3300019767	Soil	MKTLRQLCVASVFVFALAIPAFAGQIDTGSPAPPPQPAQSATAQGEIQTTVTGQEETGSSEATATDSATEIALNLLQSVLALF
Ga0190267_114455631	3300019767	Soil	NRSDKENQMKTLRQLCVASVFVFSLTFPAFAGEIQTGVAPPPSQPAQTATVNGEIQTGLTGQEETGSGEVSATDSATEIALNLLQTVLALF
Ga0196977_100007320	3300020146	Soil	MKTLRQLSVALVFTLALAVPAFAGQIDTTVAPPQPVQTATADGQIDTTVMGQTEPDSGEATAADAVAEAVLNLLHSLLSLF
Ga0196977_10383762	3300020146	Soil	MKSLHQLCVAVVFTLALAGPAFAGVMDTGAPTPPPSQPAQTATVNGVMDTGLTGQEETGSGEVSATDSATEAVLNLLQSVLTLF
Ga0196977_10516661	3300020146	Soil	FRENKMKTLRRLCVASVFTLALTISAFAGQIETPKTQPATPPAAIAGQIETPVTGQMEIGSSEATATDSVTEAVLNLLQSVLSLF
Ga0196977_10893201	3300020146	Soil	MKALRLLCVTSAFTLALAIPAFAGDIQTGVTSPPPPQTVTANGDIQTTVTGQEETVSGEATAADSATESVLNLIQSVLSLF
Ga0196977_10984521	3300020146	Soil	MKTLRQLCVASVFVFALAIPAFAGEISTGIAPPPPSQPAQTATVDGEISTGITGQEETGSSEATATGSATEIALSLLQSVLALF
Ga0196978_100004030	3300021067	Soil	MKTLRQFCVAVVFTLALAIPAFAGVMEIGSPTPPPSQPQTAAVNGEMPIGLTGQEETGSSEATAADSATEIALNLVQSVLSLF
Ga0213876_1000003576	3300021384	Plant Roots	MKDLRRLFGAVVFALALTIPAFAGDIQTGVAPPSQPAQTATANGDIQTGVTGQEETGSSEATATGSATEIALNLLQSVLSLF
Ga0213876_1000009784	3300021384	Plant Roots	MKNLRRLSIALVFTLTLTIPAFAGEIDTGKTSPPPSQPSQTATVNGEIDTGLTGQEETGSSEATATDSAAEIALNLLQSVLSLF
Ga0213876_100119355	3300021384	Plant Roots	MKNLRRLFCAVVFTLALTIPAFAGDIQTGIAPPPSQPQTATVNGDIQTGLTEQAETGSSEATAADSATEIALNLLQSVLAFF
Ga0196962_102094151	3300024430	Soil	MKTLRQLFVASAFTLVLTLPALAGEIQTPKSQPTQATAEGEIQTPLTGQIETTGSVSEATVIDSATEIALNLLQSVLSLF
Ga0207679_119381772	3300025945	Corn Rhizosphere	MKTLRQLLVASVFTFVLTTPAFAGQMDTTVAPPQPAQSATAQGEMQTTVTGQEETGSSEATATDSATEIALNLLQSVLSLF
Ga0209522_10346391	3300027119	Forest Soil	MNPLRQPLVALVFTLALAIPAFAGEIETGKTTPPSTPTAITTGEIETGITGQEEIGSGEATAADSATEIALNLLQSVLSLF
Ga0209461_100012386	3300027750	Agave	ALSISTFAGEIEITKTAPPPTQLATANGDIQTGITGQEETSSGEATTTDSAAEIALNLLQSVLSLF
Ga0307515_102742271	3300028794	Ectomycorrhiza	MKVLRQLCVASALTLALTLSAFAGDIETPKASPAPPPQTVTTGGDIQTTVTGQVETGSSEATAADSVTETVLNLLQSVLSLF
Ga0268240_101020741	3300030496	Soil	MKSPRQLCVALVFTFALELPTFAGEISTTVAPPPSAQAVSAAGEIHTTVVGQGVANSGEATAADSATEIALNLLQSVLSLF
Ga0268243_10046902	3300030510	Soil	MKTLRQLCVASVFVFALAITAFAGEIQTPLAPPPPAQSATAQGEISTGITGQEETGSSEATAADSATEIALNLLQSVLTLF
Ga0268243_10062882	3300030510	Soil	MKNLRRLSVALVFTLTLTIPAFAGEIDTGKTSPPPSQLSQTATVNGEIDTGLTGQEETGSSEATATDSATKIALNLLQTVLALF
Ga0268243_10260311	3300030510	Soil	MKPLRQLCLALVFTFTLALPAFAGEMQTTVAPPQPAQSATSQGEMQTTVTGQEEADSSEATATDSATEIALNLLQSVLSLI
Ga0074003_139934032	3300031003	Soil	MKNLGRLFCAVVFTLALTIPAFAGDMQTTVTSPPPAQPQTATLNGDIQTGVTGQAETDSSEATAADSATGIALNLLQSVLALF
Ga0307468_1003010811	3300031740	Hardwood Forest Soil	MKNLRRLCGAVVFTLALTIPAFAGDIQTTVTSPPPSQPSQTATLNGDIQTGVTGQVETGSSEATASGSATEITLNLLMSVLALF
Ga0268251_104981862	3300032159	Agave	MKTLRRLLVALVFTFALAIPAFAGEMETGKTPPPTPTATTAGEMETGITGQEATGSSEATAADSATELALNLLQ
Ga0334918_004315_384_638	3300034000	Hypolithic Biocrust	MKNLRQLCVALVFALALTAPALAGDMETGKTQQPPPSNQTVATTEGQIDTTVAGQIETGSSEATAADSATEIALGLLQSVLSLF
Ga0334918_018731_174_425	3300034000	Hypolithic Biocrust	MKTLRRLCVALVFTFALTLPTFAGEITTMIAPPPAQSSQAATTQGEISTPVAGQMDTGSSEATAADSATEVALNLLQSVLALF
Ga0334918_063561_273_524	3300034000	Hypolithic Biocrust	MKTLRQLCVASVFVFALAISAIAGQIDTGSPAPPPQPAQSATAQGEIQTTVTGQEETGSSEATATDSATEIALNLLQSVMSLF
Ga0334919_043530_395_637	3300034001	Hypolithic Biocrust	MKTLRQLCVASVFVFALAIPALAGEIQTPLLPPQPAQSATQGEIETTVTGQEETGSGEASATDSATEIALNLLQSVLALF
Ga0334920_000173_2482_2727	3300034002	Hypolithic Biocrust	MKNLGRLFCAVVFTLALTIPAFAGDMQTGVAPPSQPQTATLNGDMQTTVTGQAETDSSEATAADSATEIALNLLQSVLALF
Ga0334920_000397_15494_15757	3300034002	Hypolithic Biocrust	MKTLRQLCVASVFVFSLAIPAFAGEIQTTVAPPPPVQTSTTNGQATVNGEIQTGLTGQEETGSGEASATDSATEIALNLLQTVLALF
Ga0334930_005379_1428_1682	3300034005	Sub-Biocrust Soil	MKSLRRLSVALVFTLALTIPAFAGEIETTKTSPPPSQPSQTATVNGEIETTVTGQEETGSSEATAADPVAEIALNLLQSVLALF
Ga0334934_011065_421_672	3300034006	Biocrust	MKNLGRLFCAVVFTLALTIPAFAGDMQTTVTSPPPAQPQTATLGGDIQTGVTGQAETGSSEATAADSAADIALNLLQSVLSLF
Ga0334936_007283_1669_1926	3300034007	Biocrust	MKTLRQLCVAVVFTLALATSTFAGIIEIGSPAPPPPSQPAQTATVNGEMQIGLTGQEETGSGEVSATDSATETALNLLQSVLALF
Ga0334936_008735_2125_2334	3300034007	Biocrust	MKTLRQLCVAVVFTLALAAPAFAGEMPIGSPTTTPSQPQMATANGEMPIGLTGQEETGSGEVSATDSATE
Ga0334944_058164_11_262	3300034009	Sub-Biocrust Soil	MKTLRRFCAVVVFTLALAIPALAGEMPIGSPTTPPSQPQTATVNSDIHTTVAGQEETGSCEATAADSATEIALNLLQSVLSLF
Ga0334944_069687_70_315	3300034009	Sub-Biocrust Soil	MKTMRQLCVAVVFTLALTIPTFAGEIQIPAPVPQPTQTATANGQIDTGLTGQEETGSGEASAADLATETALNLLQSVLSLF
Ga0334946_000038_19411_19662	3300034026	Sub-Biocrust Soil	MKTLRQLCVAGVFTLALSISTFAGEIEIGKTTPPPSQPQTTTLNGEIEIGLTGQAETNSGEATAADSATDTVLNLLQSVLALF
Ga0334946_000063_5153_5404	3300034026	Sub-Biocrust Soil	MKTLRQLCVAVVFTLALAAPAFAGEMPIGSPTPPPSQPQTATVNGEMPIGLTGQEETGSSEATAADSATEAVLNLLQSVLAHF
Ga0334946_005865_883_1134	3300034026	Sub-Biocrust Soil	MKPLRQLCITLAFTLSLTLPAFAGEISTTVAPPQPAQTSTAAADGEISTGVTGQEETGSGEVSATDSATEIALNLLQSVLALF
Ga0334946_024927_3_206	3300034026	Sub-Biocrust Soil	MKTLRQLCVASVFVFALAIPAFAGEISTGIAPPPPSQPAQTATVDGEISTGITGQEEPGSSEATASDS
Ga0334949_068254_152_397	3300034027	Biocrust	MKPLRQLCLALVFTFTLALPAFAGEMQTTVAPPQPAQSATAQGEMQTTVTGQEETSSSEATAADSATETVLNLLQNIVSLF
Ga0334952_000073_8663_8881	3300034030	Biocrust	LTLTLALSVAAYAGEIHTTVAPPPPAPAATTADGQIETPVAGQEETGSSEATATDSAAEIALNLLQSVLSLF
Ga0334929_000510_3801_4052	3300034135	Hypolithic Biocrust	MKTLRQLSVALVFALALTVPALAGDIETGKTQPPPSTPTAATSEGQIETTVAGQEETGSSETTVADSATKIALSLLQSVLSLF
Ga0334943_035534_428_682	3300034137	Biocrust	MKNLHRLCGAIVFTLALTIPAFAGDIQTTVTSPPPSQPAQTATLNGDIQTGVTGQAETGSSEATAADSAAEIALNLLQSVLALF
Ga0334963_006873_256_513	3300034145	Sub-Biocrust Soil	MKNLRRISIAFAFTLALTIPAFAGEIETTKTSPPPPSQPAQTATVNGEIETGITGQEETSSGEVSATDSATEIALNLLQTVLALF
Ga0334963_027579_310_564	3300034145	Sub-Biocrust Soil	MKSLRQLCVVLVFTLALTLPAFAGEITTMVVPPPPSQPAQTATAGGENSTTVTGQEETDSSEATAVDSATEIALNLLQSVLSLL
Ga0334925_000522_695_949	3300034173	Hypolithic Biocrust	MKNLRRISIALAFTLALTIPAFAGEIETGKTSPPPSQPSQTATANGEIETGLTGQEETGSGEASATDSATAAVLNLLQTVLALF
Ga0334925_000919_4233_4487	3300034173	Hypolithic Biocrust	MKNLRRLSVALVFTLTLTIPAFAGEIDTGKTSPPPSQPSQTATVNGEIDTGLTGQEETGSSEATATDSATEIALNLLQSVLSLF
Ga0334937_015272_982_1236	3300034221	Biocrust	MKTLRQLCVASVFVFALAIPAFAGEISTGIAPPPPSQPAQTATVDGEISTGITGQEEPGSSEATASDSATEIALNLLQSVLALF
Ga0334917_109919_203_451	3300034391	Hypolithic Biocrust	MKNLRRLCGALVFTLALTIPAFAGDIQTGVAPPSQPAQTATLNGDIQTGVTGQAETGSSEATAADSATEIALNLLQSVLSLF
Ga0334945_032420_250_501	3300034779	Sub-Biocrust Soil	MKALRQLCVAGLFTLALSISTFAGEIEIGKTTPPPSQPQTTTLNGEIEIGLTGQAETNSGEATAADSATDTVLNLLQSVLALF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093140

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences