Metagenome / Metatranscriptome Family F092946

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092946
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	49 residues
Representative Sequence	REGAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Number of Associated Samples	92
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.87 %
% of genes near scaffold ends (potentially truncated)	93.46 %
% of genes from short scaffolds (< 2000 bps)	79.44 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.131 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.626 % of family members)
Environment Ontology (ENVO)	Unclassified (28.972 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.944 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.68% β-sheet: 0.00% Coil/Unstructured: 51.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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SCOP family	SCOP domain	Representative PDB	TM-score
a.118.8.9: TPR-like repeats from PCI (proteasome / COP9 signalosome / eIF3) domains	d4lcta1	4lct	0.79544
a.8.7.1: Typo IV secretion system protein TraC	d1r8ia_	1r8i	0.79324
d.58.26.4: Phosphomevalonate kinase (PMK)	d2pg9a2	2pg9	0.79245
a.146.1.1: Telomeric repeat binding factor (TRF) dimerisation domain	d3bqoa_	3bqo	0.78904
a.90.1.1: Transcription factor STAT-4 N-domain	d1bgfa_	1bgf	0.78626

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF07883	Cupin_2	68.22
PF03706	LPG_synthase_TM	5.61
PF12849	PBP_like_2	2.80
PF00583	Acetyltransf_1	1.87
PF13614	AAA_31	0.93
PF02643	DUF192	0.93
PF00190	Cupin_1	0.93
PF12327	FtsZ_C	0.93
PF00149	Metallophos	0.93
PF02371	Transposase_20	0.93
PF02452	PemK_toxin	0.93
PF12848	ABC_tran_Xtn	0.93
PF07811	TadE	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	5.61
COG1430	Uncharacterized conserved membrane protein, UPF0127 family	Function unknown [S]	0.93
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	85.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	83.18 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	31.78 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	2.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Unclassified	root	N/A	1.87 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	30.84 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	2.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Unclassified	root	N/A	1.87 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.84 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	2.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Unclassified	root	N/A	1.87 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.84 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	2.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Unclassified	root	N/A	1.87 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.84 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	2.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Unclassified	root	N/A	1.87 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.84 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	2.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Unclassified	root	N/A	1.87 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_107254508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300000956\|JGI10216J12902_106821872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1703	Open in IMG/M
3300000956\|JGI10216J12902_110339213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1026	Open in IMG/M
3300000956\|JGI10216J12902_111453604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300000956\|JGI10216J12902_111588488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1269	Open in IMG/M
3300000956\|JGI10216J12902_123373070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	647	Open in IMG/M
3300001361\|A30PFW6_1043818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300002568\|C688J35102_118235163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	541	Open in IMG/M
3300002568\|C688J35102_118932856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615	Open in IMG/M
3300004081\|Ga0063454_100002738	All Organisms → cellular organisms → Bacteria → Proteobacteria	3481	Open in IMG/M
3300004114\|Ga0062593_101963159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	649	Open in IMG/M
3300004479\|Ga0062595_100051247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1890	Open in IMG/M
3300004479\|Ga0062595_100061742	All Organisms → cellular organisms → Bacteria	1787	Open in IMG/M
3300005093\|Ga0062594_100507982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1022	Open in IMG/M
3300005093\|Ga0062594_100784397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	878	Open in IMG/M
3300005093\|Ga0062594_101028169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	796	Open in IMG/M
3300005172\|Ga0066683_10116109	All Organisms → cellular organisms → Bacteria	1630	Open in IMG/M
3300005176\|Ga0066679_10610771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	711	Open in IMG/M
3300005187\|Ga0066675_11225926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300005332\|Ga0066388_100365724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2089	Open in IMG/M
3300005458\|Ga0070681_10959792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	774	Open in IMG/M
3300005526\|Ga0073909_10080968	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300005547\|Ga0070693_100390085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	963	Open in IMG/M
3300005578\|Ga0068854_102264099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M
3300005587\|Ga0066654_10564463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300005598\|Ga0066706_11384803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300006028\|Ga0070717_11395855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
3300006173\|Ga0070716_100815303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	724	Open in IMG/M
3300006791\|Ga0066653_10238515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	926	Open in IMG/M
3300009012\|Ga0066710_101665722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	973	Open in IMG/M
3300009012\|Ga0066710_103750508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	571	Open in IMG/M
3300009090\|Ga0099827_11795833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534	Open in IMG/M
3300010039\|Ga0126309_11107137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300010040\|Ga0126308_10512448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	811	Open in IMG/M
3300010042\|Ga0126314_11007882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300010373\|Ga0134128_12286677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	596	Open in IMG/M
3300011107\|Ga0151490_1588356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1169	Open in IMG/M
3300011271\|Ga0137393_10771908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	822	Open in IMG/M
3300012011\|Ga0120152_1002596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9198	Open in IMG/M
3300012200\|Ga0137382_10881485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	645	Open in IMG/M
3300012211\|Ga0137377_10463562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1205	Open in IMG/M
3300012212\|Ga0150985_110156145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	723	Open in IMG/M
3300012353\|Ga0137367_10352594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1047	Open in IMG/M
3300012355\|Ga0137369_10050737	All Organisms → cellular organisms → Bacteria	3633	Open in IMG/M
3300012355\|Ga0137369_10109302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2254	Open in IMG/M
3300012356\|Ga0137371_11300837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300012360\|Ga0137375_10072538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3628	Open in IMG/M
3300012363\|Ga0137390_11749321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300012910\|Ga0157308_10424281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300012922\|Ga0137394_10511717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1019	Open in IMG/M
3300012929\|Ga0137404_10151146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1931	Open in IMG/M
3300012948\|Ga0126375_12114110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
3300012961\|Ga0164302_11389037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	573	Open in IMG/M
3300013105\|Ga0157369_11325404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300013763\|Ga0120179_1099795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	641	Open in IMG/M
3300013764\|Ga0120111_1000415	All Organisms → cellular organisms → Bacteria	22529	Open in IMG/M
3300013766\|Ga0120181_1001870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8343	Open in IMG/M
3300014052\|Ga0120109_1003218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3739	Open in IMG/M
3300014058\|Ga0120149_1019090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1576	Open in IMG/M
3300014325\|Ga0163163_12824111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	542	Open in IMG/M
3300014326\|Ga0157380_11402056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	749	Open in IMG/M
3300015371\|Ga0132258_10861475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2286	Open in IMG/M
3300015372\|Ga0132256_100642006	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300015373\|Ga0132257_100060106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4263	Open in IMG/M
3300015374\|Ga0132255_100131028	All Organisms → cellular organisms → Bacteria	3465	Open in IMG/M
3300015374\|Ga0132255_101857391	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300017792\|Ga0163161_10201739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1533	Open in IMG/M
3300017961\|Ga0187778_10090475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1895	Open in IMG/M
3300018027\|Ga0184605_10019813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2684	Open in IMG/M
3300018028\|Ga0184608_10088085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1282	Open in IMG/M
3300018060\|Ga0187765_10001204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10011	Open in IMG/M
3300018060\|Ga0187765_10329871	Not Available	923	Open in IMG/M
3300018431\|Ga0066655_11202291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300019255\|Ga0184643_1422262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300019875\|Ga0193701_1007366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2131	Open in IMG/M
3300019888\|Ga0193751_1006632	All Organisms → cellular organisms → Bacteria	6375	Open in IMG/M
3300021078\|Ga0210381_10001996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4144	Open in IMG/M
3300021078\|Ga0210381_10074727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1063	Open in IMG/M
3300021080\|Ga0210382_10017065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2572	Open in IMG/M
3300021080\|Ga0210382_10039395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1817	Open in IMG/M
3300021344\|Ga0193719_10044087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1932	Open in IMG/M
3300021363\|Ga0193699_10404158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300022694\|Ga0222623_10152303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	900	Open in IMG/M
3300024288\|Ga0179589_10069563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1376	Open in IMG/M
3300025912\|Ga0207707_10675330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	869	Open in IMG/M
3300025915\|Ga0207693_10849610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	702	Open in IMG/M
3300025927\|Ga0207687_11833620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300026523\|Ga0209808_1108657	All Organisms → cellular organisms → Bacteria → Proteobacteria	1160	Open in IMG/M
3300026524\|Ga0209690_1144584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	884	Open in IMG/M
3300026552\|Ga0209577_10193718	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300028710\|Ga0307322_10081864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	815	Open in IMG/M
3300028711\|Ga0307293_10149016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	745	Open in IMG/M
3300028715\|Ga0307313_10050624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1216	Open in IMG/M
3300028720\|Ga0307317_10057173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1258	Open in IMG/M
3300028721\|Ga0307315_10001707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5300	Open in IMG/M
3300028768\|Ga0307280_10002340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4691	Open in IMG/M
3300028782\|Ga0307306_10113314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	731	Open in IMG/M
3300028787\|Ga0307323_10100021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1040	Open in IMG/M
3300028787\|Ga0307323_10108337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	998	Open in IMG/M
3300028791\|Ga0307290_10161571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	820	Open in IMG/M
3300028796\|Ga0307287_10000124	All Organisms → cellular organisms → Bacteria	27948	Open in IMG/M
3300028807\|Ga0307305_10341096	Not Available	680	Open in IMG/M
3300028828\|Ga0307312_10165937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1407	Open in IMG/M
3300028876\|Ga0307286_10090227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1069	Open in IMG/M
3300028878\|Ga0307278_10395458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300033158\|Ga0335077_10932724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	872	Open in IMG/M
3300033805\|Ga0314864_0001203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5017	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.78%
Host-Associated	Host-Associated	11.21%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.31%
Plants	Host-Associated → Plants	11.21%
Aquatic	Environmental → Aquatic	7.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.54%
Freshwater	Environmental → Aquatic → Freshwater	4.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.74%
Sediment	Environmental → Aquatic → Sediment	2.80%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.29%
Loam	Environmental → Terrestrial → Soil → Loam	9.35%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.32%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.61%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.02%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.15%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.61%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.74%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001361	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-PF)- 6 month illumina	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300013766	Permafrost microbial communities from Nunavut, Canada - A26_65cm_6M	Environmental	Open in IMG/M
3300014052	Permafrost microbial communities from Nunavut, Canada - A23_35cm_12M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1072545082	3300000955	Soil	IETLEREGAPPGVLLEELRGLVHDAEVWARTEGGERAKNAVERCASALSTTA*
JGI10216J12902_1068218723	3300000956	Soil	LEREGAPPGVLLEELRGLVQAAEAWAKLEGDDRARTTVERCDAALSQPVA*
JGI10216J12902_1103392132	3300000956	Soil	LDRIETLEREGAPPGVLLDELRGLVHDAEEWARTEGGERAKDAVERCAAALAAPVTVT*
JGI10216J12902_1114536041	3300000956	Soil	LEELRGLVHEAEAWAKLEGDERARKTVEDCETALAQPVS*
JGI10216J12902_1115884881	3300000956	Soil	EGAPPGVLLEELRGLVQEAEAWVRLEGDERAQRAIERCDAALAQPVS*
JGI10216J12902_1233730702	3300000956	Soil	RGLVRDAESWARLERDERAAAAVERCDAALAQPVA*
A30PFW6_10438182	3300001361	Permafrost	RLDRIEELEREGAPPGVLLEELRGLVQAAEVWAKLEGDERSRRAVERCDAALSQPVA*
C688J35102_1182351632	3300002568	Soil	PPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA*
C688J35102_1189328562	3300002568	Soil	EELDREGAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERFDAALSQPVA*
Ga0063454_1000027381	3300004081	Soil	VLERRGAPPAAVLEELRGLLHEAEAWVRIEGDTRAEAALARCDAALAQPVP*
Ga0062593_1019631591	3300004114	Soil	VLLEELRGLVQEAEAWARREGGERAKDAVERCAAALSTPVS*
Ga0062595_1000512473	3300004479	Soil	RLDRIETLEREGAPPGVLLDELRGLVRDAEDWARKEGGERAKHAVERCAAALGAPVA*
Ga0062595_1000617423	3300004479	Soil	GVLLEELRGLVQAAETWAKLEGDERARTAVESCDAALSQPVA*
Ga0062594_1005079822	3300005093	Soil	REGAPPGVLLEELRGLVQEAEAWARVEGGERAATAVERCASALGTPVA*
Ga0062594_1007843971	3300005093	Soil	RLDRIETLEREGAPPGVLLEELRGLVQEAETWARREGGERAKDAVERCASALSAPVT*
Ga0062594_1010281692	3300005093	Soil	ELEREGAPPGVLLEELRGLVHAAEAWAKLEGDERAHTALERCDAALSQPVA*
Ga0066683_101161091	3300005172	Soil	PPAVLLEELRGLVRDAESWARLEHDERAAAAVERCGAALAQPVA*
Ga0066679_106107712	3300005176	Soil	APPGVLLEELRGLVQEAEVWARLEGDERARTAVERCDAALAQPVA*
Ga0066675_112259262	3300005187	Soil	EGAPPGVLLEELRGLVQAAEAWAKLEGDERARTAVEQCDGALAQPVA*
Ga0066388_1003657241	3300005332	Tropical Forest Soil	DVLERDGAPPAALLEELRGLVRDAEVWARLERDERAAAAVERCDAALAQPVA*
Ga0070681_109597921	3300005458	Corn Rhizosphere	MDDARAVLGRLDRIETLEREGAPPGVLLEELRGLVQEAETWARREGGERAKDAVERCASALSAPVT*
Ga0073909_100809682	3300005526	Surface Soil	ALLEELRGLVRDAEAWARTEGDGRAAAAVERCGDALGAVPAA*
Ga0070693_1003900851	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LEELRGLVQAAEAWAKLEGDERARTAVERCDTALAQPVA*
Ga0068854_1022640992	3300005578	Corn Rhizosphere	LEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA*
Ga0066654_105644631	3300005587	Soil	LLEELRGLVQEAETWARVEGGEREREAVERCASALGAPVA*
Ga0066706_113848031	3300005598	Soil	RLDRIEELEREGAPPGVLLEELRGLVHEAEVWAKLEGDERARRAVDDCDAAFAQPVS*
Ga0070717_113958551	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VLARLDRIEELEREGAPPGVLLEELRGLVQAAEAWAKLEGDERARRAVERCDSALVQPVA
Ga0070716_1008153031	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	REGAPPGVLLEELRGLVQAAEAWAKLEGDERARRAVERCDSALVQPVA*
Ga0066653_102385152	3300006791	Soil	EELRGLVQAAEVWAKLEGDERARTAVENCDAALAQPVT*
Ga0066710_1016657222	3300009012	Grasslands Soil	ARLDRIEELEREGAPPGVLLEELRGLVQAAEAWAKLEGDERARTAVEQCDGALAQPVA
Ga0066710_1037505081	3300009012	Grasslands Soil	GAPPGVLLEELRGLVHEAEAWAKLERDERARKAVDDCDSALAQPVS
Ga0099827_117958332	3300009090	Vadose Zone Soil	LLEELRGLVQEAEAWARLEGDERARTAVERCDAALAQPVA*
Ga0126309_111071371	3300010039	Serpentine Soil	LLEELRGLVQEAEAWACAEGGERAKTAVERCASALGASVA*
Ga0126308_105124482	3300010040	Serpentine Soil	GALLDELRGLVQAAEIWVRVEGDERARTALERCDEALGATVT*
Ga0126314_110078821	3300010042	Serpentine Soil	GALLEELRGLVQAAEAWARLEADQRASTAVERCASALATPVA*
Ga0134128_122866772	3300010373	Terrestrial Soil	GAPPGVLLEELRGLVQAAEAWARLEGGERARTAVERCEAALAEPLTFA*
Ga0151490_15883563	3300011107	Soil	GAPPGALLEELRGLVQAAEAWAKLEGDERARTAVDRCDAALAQPVA*
Ga0137393_107719082	3300011271	Vadose Zone Soil	EGAPPGVLLEELRGLVQAAEAWAKLEGDDRARTAVERCDASLAQPVA*
Ga0120152_10025961	3300012011	Permafrost	VLARLDRIEELEREGAPPGVLLEELRGLVQAAEVWAKLEGDERSRRAVERCDAALSQPVA
Ga0137382_108814852	3300012200	Vadose Zone Soil	VVARLDRIEELEREGAPPGVLLEELRGLVQAAEAWAKLEGDERARTAVEQCDGALAQPVA
Ga0137377_104635621	3300012211	Vadose Zone Soil	LEREGAPPGVLLEELRGLVQAAEAWAKVEGDERARMAVERCDSALVQPVA*
Ga0150985_1101561451	3300012212	Avena Fatua Rhizosphere	GVLLEELRGLVHEAETWVGLEGGERAKKAVDRCASALGAAVA*
Ga0137367_103525941	3300012353	Vadose Zone Soil	ALEREGAPPGVLLEELRGLVQEAEAWVRVEGGARAREAVERCASSLGASVA*
Ga0137369_100507371	3300012355	Vadose Zone Soil	RLDRIETLEREGAPPGVLLDELRGLVQEAEAWVHLDGDARAAGAVERCAHVLGDPAAASRT*
Ga0137369_101093022	3300012355	Vadose Zone Soil	RLDRIETLEREGAPPGVLLDELRGLVQEAEAWVHLDGDARAAGAVERCAHVLGDPAAASRTSR*
Ga0137371_113008372	3300012356	Vadose Zone Soil	RDGAPPTVLLEELRGLVRDAETWARLERDERAAAAVERCDSALAQPVA*
Ga0137375_100725386	3300012360	Vadose Zone Soil	LDRIETLEREGAPPGVLLDELRGLVQEAEAWVHLDGDARAAGAVERCAHVLGDPAAASRT
Ga0137390_117493211	3300012363	Vadose Zone Soil	LRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA*
Ga0157308_104242811	3300012910	Soil	VLARLDRIEELEREGAPPGVLLEELRGLVQAAETWAKLEGDERARTAVESCDAALSQPVA
Ga0137394_105117174	3300012922	Vadose Zone Soil	IEELEREGAPPGVLLEELRGLVQAAEAWVKLEGDERARTAVERCDAALSQPVA*
Ga0137404_101511463	3300012929	Vadose Zone Soil	ARLDRIEELEREGAPPGVLLEELRGLVQAAEAWAKLEGDERARTAVEQCDAALAQPVA*
Ga0126375_121141101	3300012948	Tropical Forest Soil	GVLLEELRGLVHDAEEWARTEGGERAKDAVERCAAALGAPVT*
Ga0164302_113890373	3300012961	Soil	DRIEELEREGAPPGVLLEELRGLVQAAEAWAKLEGDERARTAVEGCDAALAQPVT*
Ga0157369_113254042	3300013105	Corn Rhizosphere	DRIEELDREGAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA*
Ga0120179_10997953	3300013763	Permafrost	IEELEREGAPPGVLLEELRGLVQAAEAWAKLEGDQRARTAVERCDAALAQPVA*
Ga0120111_10004151	3300013764	Permafrost	PGVLLEELRGLVQAAEAWAKLEGDERARTAVERCDASLAQPVA*
Ga0120181_10018701	3300013766	Permafrost	IEELEREGAPPGVLLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA*
Ga0120109_10032185	3300014052	Permafrost	PPGVLLEELRGLVQAAEAWAKLEGDERARTAVERCDASLAQPVA*
Ga0120149_10190901	3300014058	Permafrost	PGVLLEELRGLVQAAEAWAKLEGDERAHTAVERCDASLAQPVA*
Ga0163163_128241112	3300014325	Switchgrass Rhizosphere	DREGAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA*
Ga0157380_114020561	3300014326	Switchgrass Rhizosphere	GAPPGVLLEELRGLVHAAEAWAKLEGDERAHTALERCDAALSQPVA*
Ga0132258_108614751	3300015371	Arabidopsis Rhizosphere	LLEELRGLVRDAEAWVRTEGDGRAAAAVERCGDALGAVPAG*
Ga0132256_1006420061	3300015372	Arabidopsis Rhizosphere	GAPPGALLEELRGLVRDAETWVRTEGDGRAAAAVERCGDALGAVPAA*
Ga0132257_1000601061	3300015373	Arabidopsis Rhizosphere	EREGAPPGVLLDELRGLVHEAEEWARTEGGERAKDAVERCAAALGAPVT*
Ga0132255_1001310281	3300015374	Arabidopsis Rhizosphere	ARLDRIETLEREGAPPGVLLDELRGLVHEAEEWARTEGGERAKDAVERCAAALGAPVA*
Ga0132255_1018573912	3300015374	Arabidopsis Rhizosphere	LEELRGLVRDAEAWVRTEGDGRAAAAVERCGDALGAVPAA*
Ga0163161_102017391	3300017792	Switchgrass Rhizosphere	PGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Ga0187778_100904752	3300017961	Tropical Peatland	VVLDRLDRIETLERGGAPPDVLLAELRGLVQAAERWVRLEGDERARAAVERCDAALSMPT
Ga0184605_100198134	3300018027	Groundwater Sediment	ARLDRIETLEREGAPPGVLLEELRGLVQAAEAWAKLEGDERARTTVERCDAALAQPVT
Ga0184608_100880851	3300018028	Groundwater Sediment	LLEELRGLVQAAEAWAKLEGDERARTTVERCDAALAQPVA
Ga0187765_1000120410	3300018060	Tropical Peatland	HRASVDDVDEARVVLDRLDRIETLERGGAPPDVLLAELRGLVQAAERWVRLEGDERARAAVERCDAALSMPTA
Ga0187765_103298712	3300018060	Tropical Peatland	VDEARVVLDRLDRIETLERGGAPPDVLLAELRGLVQAAEHWVRLEGDERARAAVERCEEALSTSTA
Ga0066655_112022911	3300018431	Grasslands Soil	RAVIDRLERIDVLEREGAPPAVLLEELRGLVRDAESWARLEHDERAAAAVERCDAALAQPVA
Ga0184643_14222621	3300019255	Groundwater Sediment	RIEELEREGAPPGVLLEELRGLVQAAEVWARLEGDERARTAVERCDAALAQPVA
Ga0193701_10073663	3300019875	Soil	IGRLDRIEELDREGAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Ga0193751_10066327	3300019888	Soil	DRIEELEREGAPPGVLLEELRGLVQAAEAWAKLEGDERARTAVERCDASLAQPVA
Ga0210381_100019961	3300021078	Groundwater Sediment	LRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Ga0210381_100747271	3300021078	Groundwater Sediment	EGAPPGVLLEELRGLVQAAETWAKLEGDERARTAVRHCDAALAQPVT
Ga0210382_100170651	3300021080	Groundwater Sediment	DRIEELEREGAPPGVLLEELRGLVQAAEVWARLEGDERARTAVERCDAALAQPVA
Ga0210382_100393951	3300021080	Groundwater Sediment	LEREGAPPGVLLEELRGLVQAAEVWAKLEGDERARTTVERCDAALSQPVA
Ga0193719_100440871	3300021344	Soil	GAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Ga0193699_104041581	3300021363	Soil	DREGAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Ga0222623_101523031	3300022694	Groundwater Sediment	GAPPGALLEELRGLVQAAEAWVRVEGDERAKTALDRCDEALTAAVT
Ga0179589_100695631	3300024288	Vadose Zone Soil	EELRLVQAAEAWAKLEGDERARTAVERCDTALAQPVA
Ga0207707_106753302	3300025912	Corn Rhizosphere	MDDARAVLGRLDRIETLEREGAPPGVLLEELRGLVQEAETWARREGGERAKDAVERCASALSAPVT
Ga0207693_108496101	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LLDELRGLVRDAEEWARKEGGERAKDAVERCAAALGAPVA
Ga0207687_118336201	3300025927	Miscanthus Rhizosphere	RLDRIETLEREGAPPGVLLEELRGLVQEAETWARREGGERAKDAVERCASALSAPVT
Ga0209808_11086572	3300026523	Soil	LRGLVRDAEAWARIDGDERAREAVERCDAALAQPVA
Ga0209690_11445841	3300026524	Soil	EELRGLVHDAEAWARLEADERAAAALERCDSALAQPVAFRPPIRTAG
Ga0209577_101937183	3300026552	Soil	LRGLVQEAERWVRVDGDARARTAVERCDSALAQPVT
Ga0307322_100818642	3300028710	Soil	ARLDRIEELDREGAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Ga0307293_101490162	3300028711	Soil	LLEELRGLVQAAEAWAKLEGDERARTTVERCDAALSQPVA
Ga0307313_100506241	3300028715	Soil	EREGAPPGVLLEELRGLVQAAEAWAKLEGDERAHSAVKQCDAALAQPVA
Ga0307317_100571733	3300028720	Soil	LLEELRGLVQAAETWAKLEGDERARAAVDRCDAALSQPVA
Ga0307315_100017077	3300028721	Soil	DRIEELDREGAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Ga0307280_100023401	3300028768	Soil	RIEELDREGAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Ga0307306_101133142	3300028782	Soil	IEELDREGAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Ga0307323_101000211	3300028787	Soil	ELRGLVQAAEAWAKLEGDERAHSAVKQCDAALAQPVA
Ga0307323_101083371	3300028787	Soil	GVLLEELRGLVQAAEAWAKLEGDERARSAVEHCDAALAQPVT
Ga0307290_101615711	3300028791	Soil	PPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Ga0307287_100001241	3300028796	Soil	GRIEELEREGAPPGVLLEELRGLVQAAEVWARLEGDERARTAVERCDAALAQPVA
Ga0307305_103410962	3300028807	Soil	LEELRGLVQAAEAWARLEGDDRAQLAIERCDSALATHALT
Ga0307312_101659373	3300028828	Soil	EREGAPPGVLLEELRGLVQAAEAWAKLEGDERARTAVERCDAALSQPVA
Ga0307286_100902272	3300028876	Soil	REGAPPGALLEELRGLVQAAEAWAKLEGDERARTAVERCDAALAQPVA
Ga0307278_103954581	3300028878	Soil	RIEALECEGAPPGVLLEELRGLVQAAEAWAKLEGDERARTAVERCDAALSQPVA
Ga0335077_109327242	3300033158	Soil	LLAELRGLVQAAERWVRLEGDERARAAVDRCEDALSIPTA
Ga0314864_0001203_2727_2927	3300033805	Peatland	VDEARVVLDRLDRIETLERGGAPPDVLLAELRGLVQAAERWVRLEGDERARAAVERCDAALSMPTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092946

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences