Basic Information | |
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Family ID | F092934 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 107 |
Average Sequence Length | 43 residues |
Representative Sequence | AAAAGVGIARYYVLVTWATVVSLRNYLRRGVPATWDAAEGTR |
Number of Associated Samples | 99 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 98.13 % |
% of genes from short scaffolds (< 2000 bps) | 91.59 % |
Associated GOLD sequencing projects | 97 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.53 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (94.393 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (8.411 % of family members) |
Environment Ontology (ENVO) | Unclassified (29.907 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (43.925 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 44.29% β-sheet: 0.00% Coil/Unstructured: 55.71% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.53 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Wetlands Groundwater Polar Desert Sand Natural And Restored Wetlands Soil Soil Vadose Zone Soil Tropical Forest Soil Serpentine Soil Glacier Forefield Soil Grasslands Soil Surface Soil Soil Agricultural Soil Permafrost Soil Grasslands Soil Soil Soil Soil Peatland Tropical Peatland Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Agricultural Soil Soil Sandy Soil Fen Palsa Plant Litter Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Populus Endosphere Miscanthus Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Rhizosphere Corn Rhizosphere Boreal Forest Soil |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI1356J14229_101321043 | 3300001380 | Groundwater | AAGVGIARYYVLVTWATVVSLRNYLRRGVPATWDAAEGAQ* |
A3PFW1_101161053 | 3300001535 | Permafrost | FGVGLPRYYVLVTWATVVALWNYLRRGVPTTWDVAEGTR* |
Ga0055470_101146631 | 3300003992 | Natural And Restored Wetlands | AAAFGVGLPRYYVLVTWATNVALWNYLRRGVPATWTPAEGTR* |
Ga0055469_101876252 | 3300003999 | Natural And Restored Wetlands | LGLAAAFAARVPIARYYVYVTWATVQALWNYLHRGVPATWDAAEGTR* |
Ga0062589_1015270772 | 3300004156 | Soil | VGIARYYGLVTLATLVSLWNYLRRGVPATWATGEEARGAAA* |
Ga0062594_1009760552 | 3300005093 | Soil | ALLGAAAARVGIARYYVLVTWATVASLANYLRRGVPAAWDPGATR* |
Ga0066809_101650591 | 3300005168 | Soil | AAFAAGVPIARYYVYVTWATVQALWNYLRHGVPAAWDPAVTR* |
Ga0066673_103822522 | 3300005175 | Soil | AGVGIARYYVLVTWATVVSLWNYLRRGVPTTWTPPEGTR* |
Ga0066675_109809891 | 3300005187 | Soil | AAQLLVLLAAALGVGIARYYVLVTWATVVALWNYIKRGVPATWEAAAGTR* |
Ga0070658_107294973 | 3300005327 | Corn Rhizosphere | VLTAFAAGVPIARYYVYVTWATVQALWNYLRLGVPATWDAAEGTR* |
Ga0070663_1003462161 | 3300005455 | Corn Rhizosphere | ALLAQLGLFAAFAAGVPIARYYVYVTWATVQALWNYLRHGVPAAWDPAVTR* |
Ga0070662_1009329961 | 3300005457 | Corn Rhizosphere | LAAFAAGVPIARYYVYVTWATVQAFRNYLRRGVPATWDAAEGTR* |
Ga0070741_102972343 | 3300005529 | Surface Soil | GIARYYVLVTWATVQSLVNYLRRGVPTTWDAAEGTR* |
Ga0066704_107022692 | 3300005557 | Soil | IARYYVLVTWATIVSLANVLRRGVPATWQAAEGTR* |
Ga0066704_108860901 | 3300005557 | Soil | LPRYYVLVTWATVVSLFNYVRRGVPATWEAAEGTR* |
Ga0066670_108767501 | 3300005560 | Soil | AAALGVGIARYYVLVTWATVVALWNYIKRGVPATWEAAAGTR* |
Ga0070664_1002871924 | 3300005564 | Corn Rhizosphere | FAAGVPIARYYVYVTWATVQALRNYLRRGVPATWDAAEGTR* |
Ga0068854_1001443821 | 3300005578 | Corn Rhizosphere | YALVLLGQLAVLTAFAAGVPIARYYVYVTWATVQALRNYLRRGVPATWDAAEGTR* |
Ga0066706_106762322 | 3300005598 | Soil | LHYYLLVTWATFVSLVRYLRRGVPATWDAAAGTRTLG* |
Ga0068861_1017848581 | 3300005719 | Switchgrass Rhizosphere | FVAGVPIARYYVFVTWATVQALWNYLRRGVPAAWDPAATR* |
Ga0066903_1025915513 | 3300005764 | Tropical Forest Soil | GVGVARYYVLVTCATLESLFNYARRGVPTTWESAEGTR* |
Ga0066903_1028582133 | 3300005764 | Tropical Forest Soil | GIARYYVLVTWATVVALANYLRRGVPATWEAPEGTR* |
Ga0068870_104933402 | 3300005840 | Miscanthus Rhizosphere | AAQVALGAAFVAGVPIARYYVFVTWATVQALWNYLRRGVPAAWDPAATR* |
Ga0097621_1003535933 | 3300006237 | Miscanthus Rhizosphere | LLLAALFGVGIARYYVLVTWATVVALWNYARRGVPATWEIAEGTR* |
Ga0079221_106815161 | 3300006804 | Agricultural Soil | LILVAAAAGVGIARYYVLVTWATLVSLVNYLRRGVPATWEVAEGTR* |
Ga0075420_1007075601 | 3300006853 | Populus Rhizosphere | HYYTLVSWATVVALARYLQQGGVSPTWEKAEGTR* |
Ga0105245_105805593 | 3300009098 | Miscanthus Rhizosphere | GAAAVAGVGIARYYVLVTWATLVSLWNYLRRGVPAGWEPARE* |
Ga0066709_1008525161 | 3300009137 | Grasslands Soil | QLGLLLAALVGVGVARYYVLVTWATVVALWNYGRRGVPATWEVAEGTR* |
Ga0126313_109029362 | 3300009840 | Serpentine Soil | LLLLAAALGVGVARYYVLVTWATVLALRNYLRRGVPATWEVAEGTR* |
Ga0126304_109043192 | 3300010037 | Serpentine Soil | LAYYYALVTWATVVSLWNYARRGVPATWAPPEGTR* |
Ga0126314_105651962 | 3300010042 | Serpentine Soil | AARGAQLLLLLAAALGVGIARYYVLVTWATVLALRNYLRRGVPATWEVAEGTR* |
Ga0134064_102179212 | 3300010325 | Grasslands Soil | GVGIARYYVLVTWATVVSLVNYVRRGVPATWEAAEGTR* |
Ga0126377_117560421 | 3300010362 | Tropical Forest Soil | VPIARYYVYVTWATAQALWNYLRRGVPATWDAAEGTR* |
Ga0105239_115270201 | 3300010375 | Corn Rhizosphere | AFVAGVPIARYYVFVTWATVQALWNYLRRGVPAAWDPAATR* |
Ga0126350_106781511 | 3300010880 | Boreal Forest Soil | VLAAALVGVGLPRYYVLVTWATVQALFNYLRHGVPVTWDPAEGTR* |
Ga0120174_10563362 | 3300012008 | Permafrost | LLLAAAVGVGIARYYVLVTWATLVALLNYLRRGVPATWQPAHE* |
Ga0136634_104364201 | 3300012046 | Polar Desert Sand | QLALAAQLALLAAAAAGVGIVRYYVLVTWATVVSLWNYLRRGVPAAWEPGSTR* |
Ga0137388_112371932 | 3300012189 | Vadose Zone Soil | ALGVQLGVLLAALFGVGLPRYYVLVTWATVVALWNYLRRGVPTTCDAAEGTR* |
Ga0157285_102846251 | 3300012897 | Soil | AGQLAVLAAFAARVPLARYYVYVAWATVQALWNYLRRGVPATWDAAEGTR* |
Ga0164299_114856871 | 3300012958 | Soil | PIARYYVYVTWATVQALWNYLRHGVPAAWDPAITR* |
Ga0153916_131977182 | 3300012964 | Freshwater Wetlands | ALFGVGLPRYYVLVTWATVVALWNYLRRGVPTTWDVADGTR* |
Ga0157371_105956723 | 3300013102 | Corn Rhizosphere | PIARYYVYVTWATVQALRNYLRRGVPAAWDAAEGTR* |
Ga0157372_124798131 | 3300013307 | Corn Rhizosphere | VLLAALFGVGIPRYYVLVTWATVVALWNYARRGVATTWDVAEGTR* |
Ga0182008_106951992 | 3300014497 | Rhizosphere | VGFPRYYVLVTWATVVALWNYARRGVPTTWETAEGTR* |
Ga0157377_115956922 | 3300014745 | Miscanthus Rhizosphere | FAAGVPIARYYVYVTWATVQALRNYLRRGVPAIWDAAEGTR* |
Ga0157379_111667472 | 3300014968 | Switchgrass Rhizosphere | AAFGAGVPIARYYVYVTWATVQALWNYLRHGVPAAWDPAVTR* |
Ga0173483_100013601 | 3300015077 | Soil | VALAAAFAARVPIARYYVYVTWATVQALWNYVRRGVPATWEAAEGTR* |
Ga0167623_10345743 | 3300015161 | Glacier Forefield Soil | LAAFAARVPIARYYVYVTWATAQALWNYLRRGVPAAWDPAATR* |
Ga0182006_12106641 | 3300015261 | Rhizosphere | GIARNYELVTLATIVSLWNYVRRGVPATWEAAEGTR* |
Ga0132257_1000293691 | 3300015373 | Arabidopsis Rhizosphere | AAFAARVPIARYYVYVTWATVQALWNYVRRGVPATWEAAEGTR* |
Ga0183260_100211497 | 3300017787 | Polar Desert Sand | AGVPIARYYVYVTWATAQALWNYLRRGVPAAWDPAATR |
Ga0187776_111080352 | 3300017966 | Tropical Peatland | AVGVGVARYYVLVTWATLEALVKYLRRGVPTTWEAAEGTR |
Ga0187777_108794902 | 3300017974 | Tropical Peatland | YDLVLAAQLGLLLAAALGVGIARYYVLVTWATLVALLNYVRRGVPATWEAAEGTR |
Ga0187765_109134191 | 3300018060 | Tropical Peatland | VGVGVARYYVLVTWATLESLVNYVRRGVPATWDAAEGTR |
Ga0187773_110792832 | 3300018064 | Tropical Peatland | LAAALLGVGIARYYVLVTWATVQSLFNYLHRGVPPTWDAAEGTR |
Ga0066662_128381921 | 3300018468 | Grasslands Soil | ALAGVGIARYYVLVTWATIVSLVNYLRRGVPTTWDVAEGTR |
Ga0190270_110659573 | 3300018469 | Soil | PIARYYTYVTWATVQALWNYLRHGVAAAWDPAATR |
Ga0173482_105045081 | 3300019361 | Soil | IAAAAAGVALPRYYVLITWATNVALWNYLRRGVPATWDAAEGTR |
Ga0247769_11188971 | 3300022904 | Plant Litter | PIARYYVYVTWATVQALRNYLRRGVPATWDAAEGTR |
Ga0247756_11120392 | 3300023078 | Plant Litter | AAAGVGIARYYVLVTWATLVSLRNYLQRGVPATWDVAEGTR |
Ga0247664_11104421 | 3300024232 | Soil | VALPRYYVLITWATNVALWNYLRRGVPATWQIAEGTR |
Ga0209640_103434953 | 3300025324 | Soil | GALLAAAAVGVGIARYYVLVTWATVVSLANYLRRGVPATWEAPAR |
Ga0209342_105961901 | 3300025326 | Soil | AAAAGVGIARYYVLVTWATVVSLRNYLRRGVPATWDAAEGTR |
Ga0210113_10221534 | 3300025796 | Natural And Restored Wetlands | ALLAAFAADVPIARYYVYVTWATVQALWNYLRRGVPAAWDPAATR |
Ga0207699_105725881 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | GLLLVAAGLGVGIARYYVLVTWATVVALWNYLRRGVPATWAAPEGTR |
Ga0207643_109267681 | 3300025908 | Miscanthus Rhizosphere | VVLAAFAAGVPIARYYVYVTWATVQAFRNYLRRGVPATWDAAEGTR |
Ga0207707_110294671 | 3300025912 | Corn Rhizosphere | LLAAAAAGVGVARYYVLVTWATVVALWNFMRRGVPATWGPPEGTRA |
Ga0207657_110288811 | 3300025919 | Corn Rhizosphere | AFAAGVPIARYYVYVTWATVQALWNYLRHGVPAAWDPAVTR |
Ga0207646_111513192 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | GAAALGVGIARYYVLVTWATVVGLANYLKRGVPATWEVAEGTR |
Ga0207646_114023611 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | LAAAALGVGIARYYVLVTWATLVSLLNYVRRGVPATWEVAEGTRV |
Ga0207664_105263471 | 3300025929 | Agricultural Soil | GLPRYYILITWATVQALFNYLRNGVPATWDAAQGTR |
Ga0207664_111545152 | 3300025929 | Agricultural Soil | FVAQGLLLVAAGLGVGIARYYVLVTWATVVALWNYLRRGVPATWAAPEGTR |
Ga0207664_119495141 | 3300025929 | Agricultural Soil | LVGVGIARYYVLISWATVVALVNYVRRGVPTTWEAAEGTR |
Ga0207690_105203753 | 3300025932 | Corn Rhizosphere | AALFGVGLPRYYVLVTWATNVALWNYLRRGVPTTWEAAEGTR |
Ga0210066_10574912 | 3300025951 | Natural And Restored Wetlands | FLGAAAAGVPLARYYTLVTWATLQALVNYLRRGVPATWEAAEGTR |
Ga0207640_109360882 | 3300025981 | Corn Rhizosphere | VLTAFAAGVPIARYYVYVTWATVQALRNYLRRGVPATWDAAEGTR |
Ga0207639_113147691 | 3300026041 | Corn Rhizosphere | FAAFAAGVPIARYYVYVTWATVQALWNYLRHGVPAAWDPAVTR |
Ga0209807_10443324 | 3300026530 | Soil | QLGVLAAALLGVGIARYYVLVTWATVQSLFNYLRRGVPATWDAAEGTR |
Ga0209810_11183142 | 3300027773 | Surface Soil | IARYYVLVTWATVVSLVNYLRRGVPATWEAAEGTR |
Ga0209166_105598842 | 3300027857 | Surface Soil | VILGLQLGVLAAALVGVGLPRYYVLVTWATVQSLVNYLRRGVPSTWDAAEGTR |
Ga0209813_102845202 | 3300027866 | Populus Endosphere | AGQLAVLAAFAARVPVARYYVYVAWATVQALWNYLRRGVPATWDAAEGTR |
Ga0247713_10300333 | 3300028104 | Soil | LLAAAAARPGLPRYYVLVTWATVQALANYLRRGVPATWQAAEGTR |
Ga0247822_107907072 | 3300028592 | Soil | LGQLAVLAAFAAGIPIARYYTYVTWATVQALRNYLRHGVAAAWDPAATR |
Ga0247820_106172741 | 3300028597 | Soil | QLAVLAAFAAGIPIARYYTYVTWATVQALRNYLRHGVAAAWDPAATR |
Ga0307311_101138672 | 3300028716 | Soil | GLLLAALVGVGIARYYVLVTWATVVALWNYVRRGVPTTWDVAEGTR |
Ga0247825_100175131 | 3300028812 | Soil | AAGIPIARYYTYVTWATVQALRNYLRHGVAAAWDPAATR |
Ga0247825_102185911 | 3300028812 | Soil | LGVGIARYYVLITWATVVALANYLRRGVPATWQVAEGTR |
Ga0302291_102450561 | 3300028865 | Fen | LAFVARVSIARYYVYITWATVQALVNYLRRGVPATWEAAEGTR |
Ga0299907_105505553 | 3300030006 | Soil | WLAAAAAGVGIARYTVLVNWATVVALWNYLRRGVPATWKVAEGTR |
Ga0302325_103255454 | 3300031234 | Palsa | SIARYYLLITLATGVALVNYLRRGVPATWKVAEGTR |
Ga0302324_1025622151 | 3300031236 | Palsa | SIARYYVLISWATVVALVNYVRRGVPATWKAAEGLR |
Ga0265328_100955071 | 3300031239 | Rhizosphere | AAALFGVGIARYYVLVTWATVESLFNYVRHGVPATWEIAEGTR |
(restricted) Ga0255312_11215311 | 3300031248 | Sandy Soil | QLGVLAAALVGVGLPRYYVLVTWATVQSLFNYIRHGVPATWDAAEGTR |
Ga0265339_105187491 | 3300031249 | Rhizosphere | AAFGVGVARYYVLVTWATVASLVNYLRRGVSVTWEVAEGTR |
Ga0308175_1018415292 | 3300031938 | Soil | GAALKGVGIARYYVLVTGATAVALGNYLRRGVPATWQPAEGTR |
Ga0308174_110757131 | 3300031939 | Soil | VLGLQLGVLLAAALGVGLPRYYVLVTWATVVALWNYLRRGVPATWELAEGPR |
Ga0308176_128023062 | 3300031996 | Soil | VGLPRYYVLITWATVAALWNYARKGVPSTWEAAEGTR |
Ga0310890_116816102 | 3300032075 | Soil | ALLGQLALAAAFAARVPIARYYVYVTWATVQALWNYARRGVPAAWDPAATR |
Ga0335085_102723532 | 3300032770 | Soil | GVGVARYYVLVTWATLESLVNYVRRGVPATWDAAEGTR |
Ga0335070_106682202 | 3300032829 | Soil | GVGVARYYVLVTWATLESLFNYARRGVPATWDAAEGTR |
Ga0335070_111987091 | 3300032829 | Soil | ALGLQLGLLAAAAVGVGVARYYVLVTWATLEALVKYLRRGVPTTWEAAEGTR |
Ga0335081_121093792 | 3300032892 | Soil | LAAAAVGVGVPRYYVLVTWATLESLFNYVRRGVPVTWEAAEGTR |
Ga0335081_125577001 | 3300032892 | Soil | YPVALGLQLGVLAAAAVGVGVPRYYVLVTWATLESLFNYVRRGVPTTWEAAEGTR |
Ga0335069_127672601 | 3300032893 | Soil | ALGLQLGLLAAAAVGVGVARYYVLVTWATLESLVNYVRRGVPATWDAAEGTR |
Ga0335077_106309522 | 3300033158 | Soil | VARYYVLVTWATLESLVNYVRRGVPATWDAAEGTR |
Ga0247829_100278756 | 3300033550 | Soil | ALLGQLAVLAAFAAGIPIARYYTYVTWATVQALWNYLRHGVAAAWDPAATR |
Ga0314866_048341_2_157 | 3300033807 | Peatland | LGLQLGVLAAAAVGVGLPRYYVLVTWATLESLFNYVRRGVPATWEAAEGTR |
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