Metagenome Family F092930

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092930
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	59 residues
Representative Sequence	VFDGDQRIGRIVWTHAASEDRRWFWTITARVPQSTHDRGYAASREQAMADFKARWEREP
Number of Associated Samples	74
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	41.35 %
% of genes near scaffold ends (potentially truncated)	42.99 %
% of genes from short scaffolds (< 2000 bps)	79.44 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.009 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (29.907 % of family members)
Environment Ontology (ENVO)	Unclassified (46.729 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (73.832 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.54% β-sheet: 20.69% Coil/Unstructured: 59.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF12680	SnoaL_2	4.67
PF07369	DUF1488	4.67
PF08241	Methyltransf_11	2.80
PF12071	DUF3551	1.87
PF13683	rve_3	1.87
PF03330	DPBB_1	1.87
PF07366	SnoaL	1.87
PF02656	DUF202	0.93
PF03734	YkuD	0.93
PF13463	HTH_27	0.93
PF13607	Succ_CoA_lig	0.93
PF13274	DUF4065	0.93
PF01547	SBP_bac_1	0.93
PF13722	CstA_5TM	0.93
PF02518	HATPase_c	0.93
PF01344	Kelch_1	0.93
PF13340	DUF4096	0.93
PF13442	Cytochrome_CBB3	0.93
PF09954	DUF2188	0.93
PF00313	CSD	0.93
PF13588	HSDR_N_2	0.93
PF12686	DUF3800	0.93
PF04986	Y2_Tnp	0.93
PF02371	Transposase_20	0.93
PF04773	FecR	0.93
PF07045	DUF1330	0.93
PF03544	TonB_C	0.93
PF13565	HTH_32	0.93
PF00903	Glyoxalase	0.93
PF00571	CBS	0.93
PF04392	ABC_sub_bind	0.93
PF00106	adh_short	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.01 %
Unclassified	root	N/A	42.99 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.01 %
Unclassified	root	N/A	42.99 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.01 %
Unclassified	root	N/A	42.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.12 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	5.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.84 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.61 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.56 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	5.61 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.87 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11.21 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	5.61 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.80 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.48 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	5.61 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.80 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.87 %
Rhizobiales bacterium 64-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	0.93 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	5.61 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	2.80 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.87 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.93 %
Bradyrhizobium barranii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii	0.93 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.93 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.93 %
Rhizobiales bacterium 64-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	5.61 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.80 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.87 %
Bradyrhizobium barranii subsp. barranii	subspecies	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. barranii	0.93 %
Bradyrhizobium sp. CCBAU 53340	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 53340	0.93 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.93 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.93 %
Rhizobiales bacterium 64-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090008\|P3_DRAFT_NODE_197162_len_1234_cov_15_128039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1284	Open in IMG/M
2124908038\|B3_all_c_ConsensusfromContig181271	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	627	Open in IMG/M
2140918007\|ConsensusfromContig146417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. barranii	1193	Open in IMG/M
2140918008\|ConsensusfromContig186550	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300001394\|JGI20191J14862_1008566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2294	Open in IMG/M
3300001397\|JGI20177J14857_1007467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2207	Open in IMG/M
3300001397\|JGI20177J14857_1016204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1123	Open in IMG/M
3300001414\|JGI20174J14864_1005413	Not Available	704	Open in IMG/M
3300002069\|JGIcombinedJ21912_10259126	Not Available	559	Open in IMG/M
3300003369\|JGI24140J50213_10012206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3279	Open in IMG/M
3300003369\|JGI24140J50213_10021442	All Organisms → cellular organisms → Bacteria → Proteobacteria	2415	Open in IMG/M
3300003369\|JGI24140J50213_10178964	Not Available	667	Open in IMG/M
3300005836\|Ga0074470_10545846	Not Available	821	Open in IMG/M
3300005938\|Ga0066795_10262543	Not Available	510	Open in IMG/M
3300005947\|Ga0066794_10230639	Not Available	556	Open in IMG/M
3300005980\|Ga0066798_10023164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2110	Open in IMG/M
3300005980\|Ga0066798_10045380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1402	Open in IMG/M
3300005980\|Ga0066798_10090223	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	903	Open in IMG/M
3300005980\|Ga0066798_10092014	Not Available	892	Open in IMG/M
3300005994\|Ga0066789_10021086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2890	Open in IMG/M
3300005994\|Ga0066789_10283614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300005994\|Ga0066789_10333803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	634	Open in IMG/M
3300005995\|Ga0066790_10140256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1036	Open in IMG/M
3300005995\|Ga0066790_10156555	All Organisms → cellular organisms → Bacteria → Proteobacteria	975	Open in IMG/M
3300006050\|Ga0075028_100713813	Not Available	604	Open in IMG/M
3300006055\|Ga0097691_1004639	All Organisms → cellular organisms → Bacteria → Proteobacteria	8056	Open in IMG/M
3300006055\|Ga0097691_1005074	All Organisms → cellular organisms → Bacteria	7600	Open in IMG/M
3300006354\|Ga0075021_10541884	Not Available	740	Open in IMG/M
3300006636\|Ga0075525_10100351	Not Available	555	Open in IMG/M
3300006640\|Ga0075527_10115154	Not Available	749	Open in IMG/M
3300006642\|Ga0075521_10139862	All Organisms → cellular organisms → Bacteria → Proteobacteria	1131	Open in IMG/M
3300006864\|Ga0066797_1068786	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1242	Open in IMG/M
3300006864\|Ga0066797_1108217	Not Available	973	Open in IMG/M
3300006950\|Ga0075524_10205336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	858	Open in IMG/M
3300007819\|Ga0104322_112250	Not Available	1136	Open in IMG/M
3300007820\|Ga0104324_102467	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300007822\|Ga0104325_128104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2934	Open in IMG/M
3300009029\|Ga0066793_10094819	All Organisms → cellular organisms → Bacteria → Proteobacteria	1724	Open in IMG/M
3300009029\|Ga0066793_10160198	Not Available	1312	Open in IMG/M
3300009029\|Ga0066793_10390432	Not Available	800	Open in IMG/M
3300009029\|Ga0066793_10557826	Not Available	653	Open in IMG/M
3300009029\|Ga0066793_10601619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300009029\|Ga0066793_10754199	Not Available	553	Open in IMG/M
3300009029\|Ga0066793_10875836	Not Available	508	Open in IMG/M
3300009029\|Ga0066793_10899342	Not Available	501	Open in IMG/M
3300009506\|Ga0118657_11833431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	705	Open in IMG/M
3300009521\|Ga0116222_1384484	Not Available	610	Open in IMG/M
3300009616\|Ga0116111_1151910	Not Available	549	Open in IMG/M
3300009649\|Ga0105855_1139888	Not Available	698	Open in IMG/M
3300009651\|Ga0105859_1010465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2378	Open in IMG/M
3300009661\|Ga0105858_1168040	Not Available	628	Open in IMG/M
3300009839\|Ga0116223_10374365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	841	Open in IMG/M
3300010341\|Ga0074045_10845214	Not Available	578	Open in IMG/M
3300010379\|Ga0136449_103381158	Not Available	611	Open in IMG/M
3300010379\|Ga0136449_104546696	Not Available	509	Open in IMG/M
3300012004\|Ga0120134_1028356	Not Available	917	Open in IMG/M
3300012931\|Ga0153915_11395531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	819	Open in IMG/M
3300012931\|Ga0153915_12384872	Not Available	619	Open in IMG/M
3300014155\|Ga0181524_10271720	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300014155\|Ga0181524_10468447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	539	Open in IMG/M
3300014158\|Ga0181521_10186538	Not Available	1150	Open in IMG/M
3300014158\|Ga0181521_10397928	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	679	Open in IMG/M
3300014159\|Ga0181530_10180764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1176	Open in IMG/M
3300014165\|Ga0181523_10169756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 53340	1275	Open in IMG/M
3300014165\|Ga0181523_10577663	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300014307\|Ga0075304_1011492	Not Available	1798	Open in IMG/M
3300014324\|Ga0075352_1151405	Not Available	652	Open in IMG/M
3300014489\|Ga0182018_10240180	Not Available	1000	Open in IMG/M
3300014501\|Ga0182024_10662517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1295	Open in IMG/M
3300014638\|Ga0181536_10008866	All Organisms → cellular organisms → Bacteria → Proteobacteria	9594	Open in IMG/M
3300014638\|Ga0181536_10370477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300014657\|Ga0181522_10090403	Not Available	1760	Open in IMG/M
3300017930\|Ga0187825_10414571	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	519	Open in IMG/M
3300017936\|Ga0187821_10139876	Not Available	910	Open in IMG/M
3300018022\|Ga0187864_10450656	Not Available	547	Open in IMG/M
3300022518\|Ga0224548_1021661	Not Available	702	Open in IMG/M
3300022881\|Ga0224545_1009384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1505	Open in IMG/M
3300025457\|Ga0208850_1008456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2023	Open in IMG/M
3300025457\|Ga0208850_1015002	Not Available	1429	Open in IMG/M
3300025464\|Ga0208076_1014300	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300025474\|Ga0208479_1018336	Not Available	1488	Open in IMG/M
3300025482\|Ga0208715_1053858	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300025482\|Ga0208715_1072442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	615	Open in IMG/M
3300025484\|Ga0208587_1027783	Not Available	1640	Open in IMG/M
3300025505\|Ga0207929_1008260	All Organisms → cellular organisms → Bacteria	1999	Open in IMG/M
3300025505\|Ga0207929_1010557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1752	Open in IMG/M
3300025509\|Ga0208848_1015016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1650	Open in IMG/M
3300025544\|Ga0208078_1004583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3475	Open in IMG/M
3300025544\|Ga0208078_1008172	All Organisms → cellular organisms → Bacteria	2545	Open in IMG/M
3300025544\|Ga0208078_1010676	Not Available	2183	Open in IMG/M
3300025553\|Ga0208080_1022961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2052	Open in IMG/M
3300025604\|Ga0207930_1036540	All Organisms → cellular organisms → Bacteria → Proteobacteria	1288	Open in IMG/M
3300025604\|Ga0207930_1078458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	778	Open in IMG/M
3300025604\|Ga0207930_1126311	Not Available	565	Open in IMG/M
3300025625\|Ga0208219_1017042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2198	Open in IMG/M
3300025953\|Ga0210068_1013073	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300026274\|Ga0209888_1044689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	843	Open in IMG/M
3300026291\|Ga0209890_10229542	Not Available	585	Open in IMG/M
3300026294\|Ga0209839_10030905	All Organisms → cellular organisms → Bacteria → Proteobacteria	2030	Open in IMG/M
3300031563\|Ga0307436_1015719	All Organisms → cellular organisms → Bacteria	2454	Open in IMG/M
3300031949\|Ga0214473_10808724	All Organisms → cellular organisms → Bacteria → Proteobacteria	1010	Open in IMG/M
3300032160\|Ga0311301_10829780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1263	Open in IMG/M
3300034125\|Ga0370484_0174232	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	583	Open in IMG/M
3300034125\|Ga0370484_0235988	Not Available	505	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.50%
Aquatic	Environmental → Aquatic	21.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.64%
Freshwater	Environmental → Aquatic → Freshwater	14.95%
Marine	Environmental → Aquatic → Marine	3.74%
Sediment	Environmental → Aquatic → Sediment	2.80%
Peat	Environmental → Terrestrial → Peat	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	32.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.87%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	34.58%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	27.10%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.28%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.41%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.87%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	29.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	14.02%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	9.35%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	7.48%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	3.74%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	3.74%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.87%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.87%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.87%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.87%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	0.93%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.93%
Permafrost Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental	Open in IMG/M
2124908038	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300001394	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012	Environmental	Open in IMG/M
3300001397	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012	Environmental	Open in IMG/M
3300001414	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012	Environmental	Open in IMG/M
3300002069	Barrow Graham LP Ref core NGADG0002-212 (Barrow Graham LP Ref core NGADG0002-212,NGADG0004-211, ASSEMBLY_DATE=20131010)	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300005980	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006636	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-two	Environmental	Open in IMG/M
3300006640	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300007819	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo	Environmental	Open in IMG/M
3300007820	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-12-2 Soapdenovo	Environmental	Open in IMG/M
3300007822	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-8-2 Soapdenovo	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009649	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012004	Permafrost microbial communities from Nunavut, Canada - A30_5cm_6M	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014307	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D1	Environmental	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300022518	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025484	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025505	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025544	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025553	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025604	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025953	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026274	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300031360	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40	Environmental	Open in IMG/M
3300031563	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P3_DRAFT_00125650	2088090008	Soil	VFDGDQHIGRIVWTHAASADRRWFWTITARVPQSTHDRGYAVSREQAMADFKARLRALA
B3_all_c_00708610	2124908038	Soil	VLDVGKHIGRIMLHPQAPAGMPWFWTITARVPQYPHDRGYAATREEAMADFKAAWERKP
A_all_C_01253980	2140918007	Soil	HIGRIMWTHAASRDTPWFWTITARVPQSAYDRGYAATREEAMADFKARWVSTEWSRRTS
Bog_all_C_03482880	2140918008	Soil	VLDVGKHIGRIMLHPQAPAGMPWFWTITARVPQYPHDRGYAATREEAMADFKAAWEREP
JGI20191J14862_10085665	3300001394	Arctic Peat Soil	EVFDANRRSIGRIMLHPRAPAGMPWFWTITARVPQSTYDRGYAATREEAMADFKARWNGVT*
JGI20177J14857_10074676	3300001397	Arctic Peat Soil	VFDGDRHIGPHHAAPKDRRWFWTITARCPQMPYDRGYAASHELAMADFKARWNGVT*
JGI20177J14857_10162041	3300001397	Arctic Peat Soil	VFDGDQHIGRIVWTHAASADRRWFWTITARVPQSTHDRGYAVSREQAMADFKARLRAVN*
JGI20174J14864_10054133	3300001414	Arctic Peat Soil	SATCAPTACAWRDDDYDVFDGDQHIGRIVWTHAAPADRRWFWTITARVPQSTHDRGYAVSREQAMADFKARLRALA*
JGIcombinedJ21912_102591261	3300002069	Arctic Peat Soil	DGARHIGRIMWTHAAPEDRRWFWTITVRVPQYPHDRGYAATREEAMAEFKRAWEREP*
JGI24140J50213_100122063	3300003369	Arctic Peat Soil	VFDGERHIGRIMWTHAAPADRRWFWTITVRVPQYPHYRGYAATREEVMANFKAARDREP*
JGI24140J50213_100214424	3300003369	Arctic Peat Soil	DDYDAFDGDRHIGRIMWTHAAPADRKWFWTITARVPQYPHDRGYAATREDAMAEFKAAWGL*
JGI24140J50213_101789641	3300003369	Arctic Peat Soil	VFDGDQHIGRIVWTHAASADRRWFWTITARVPQSTHDRGYAVSREQAMADFKARLRALA*
Ga0074470_105458461	3300005836	Sediment (Intertidal)	VFDGEQHIGRIMWTYAAPSDLRWFWTITARVPQSPHDRGYAATVTDAMADFKARWMR*
Ga0066795_102625431	3300005938	Soil	VFDGARHIGRIMWTHAAPEDRRWFWTITARVPQSAYDRGYAASREEAMVDFKATWGMV*
Ga0066794_102306391	3300005947	Soil	WSDDDYDVFDVDRHISRIMWTHAAPEDRRWFWTITVRVPQYPHDRGYAESREQAMADFKAAWER*
Ga0066798_100231645	3300005980	Soil	VRPLAGRIMWTHAAPEDRRWFWTIIARVPQYPNDRGYAATREEAMAAFKAAWEA*
Ga0066798_100453804	3300005980	Soil	VFDGDQLIGRILWTHAAPEARRWFWTITARVPQTMYDRGYAETREQAMADFKVQWARD*
Ga0066798_100902233	3300005980	Soil	VFDGDQRIGRIVWTHAASEDRRWFWTITARVPQSTHDRGYAASREQAMADFKARWEREP*
Ga0066798_100920143	3300005980	Soil	PTACAWRDDDYDVFDGDQHIGRIVWTHAASADRRWFWTITARVPQSTHDRGYAVSREQAMADFKARLRALA*
Ga0066789_100210866	3300005994	Soil	DDDYDVWDGNQHIGRIMWTHATPADRRWFWTITVRMPQYPHDRGYAASRELAMGDFKARWTA*
Ga0066789_102836143	3300005994	Soil	SDDDYDVFDGEQHIGRIMWTHAAPEDRRWFWTITARVPQSTADRGNEATREEAMADFKARWRVVN*
Ga0066789_103338032	3300005994	Soil	VFEGDQHIGRIMWTYAANRDTPWFWSITARVPQSTADRGYAASREQAMADFKARWTA*
Ga0066790_101402561	3300005995	Soil	YRAVGRILWTYAAPSDRRRFWTITARVPQYPHDRGYAASREQAMTDFKTACEREP*
Ga0066790_101565551	3300005995	Soil	VFDGEQHIGRIMWTHAAPEDRRLFWTITVRVPQSAHDRGYAATLEEAMAGFK
Ga0075028_1007138131	3300006050	Watersheds	VFDGERHVGRILWTYAASRETPWFWTITARVPQYPHDRGYAATRKEAMADFKARWRA*
Ga0097691_10046399	3300006055	Arctic Peat Soil	VFDGDRLIGRIMWTDAAPEGRRWFWTITARVPQYPHDRGYAASREQAMADFNARY*
Ga0097691_10050742	3300006055	Arctic Peat Soil	VFDDDRHIGRIMWTHATPEDRRWFWTITARVPQYPHDRGYAATREEAMADFKATWERTG*
Ga0075021_105418842	3300006354	Watersheds	IGRILWTYAAPADRRWFWTIPACDRQAMHDRACATTREQAMADLKAWWLAN*
Ga0075525_101003511	3300006636	Arctic Peat Soil	ACAWRDDDYDVFDGDQHIGRIVWTHAASADRRWFWTITARVPQSTHDRGYAVSREQAMADFKARLRALA*
Ga0075527_101151543	3300006640	Arctic Peat Soil	VFDGARHIGRIMWTHAAPEDRRWFWTITARVPQSPYDRGYAATREEAMMDFKAAWEHEP*
Ga0075521_101398623	3300006642	Arctic Peat Soil	VFDGDRHIGRVMWTHAASRETPWFWTITARVPQYPHDRGYATSREAAMAAFKAAWVDK*
Ga0066797_10687862	3300006864	Soil	VFDGDQHIGRIMWTHAAPEDRRWFWTITARVPQYPPDRGYAASREQAMSDFKARWGVTCA
Ga0066797_11082173	3300006864	Soil	WSDDVFYGERHVGRILWTHAASRDAPWFWTITARVPQYPHDRGYAATREEAMAGFKARWTELQ*
Ga0075524_102053363	3300006950	Arctic Peat Soil	DRREIGRIMLHPQAPAGRPWFWTITTRVATTTADHDYAASREQAMADFKAAWERARQ*
Ga0104322_1122501	3300007819	Permafrost Soil	DRREIGRIMWTHAASSDTPWFWTITARVPQYPHDRGYAESREQAMAEFKAAWERE*
Ga0104324_1024673	3300007820	Soil	VFDGERHIGRIMWTHAAPADRRWFWTITVRVPQYPHDRGYAATREEVMANFKAARDREP*
Ga0104325_1281041	3300007822	Soil	GRILWTHAAVRDTRWFWTITARLPNTMRDRGYAATREAAMAEFKVAWERE*
Ga0066793_100948193	3300009029	Prmafrost Soil	VGQFVRPLAGRIMWTHAAPEDRRWFWAIIARVPQYPNDRGYAATREEAMAAFKAAWEA*
Ga0066793_101601982	3300009029	Prmafrost Soil	VFDGDRHIGRIMWTRAASRDTPWFWTITTRVPQSTADRSYAASREQAMADFKARWSALF*
Ga0066793_103904322	3300009029	Prmafrost Soil	VFDGDQRIGRIVWTHAAPEDRRWFWTITARVPQSTHDRGYAASREQAMADFKARWLTDQ*
Ga0066793_105578262	3300009029	Prmafrost Soil	SDGSENVDVFDGGRHIGRILWTYATSTETPWFWTITARVPNTMHDRGYAASHEQGMADFKARWTA*
Ga0066793_106016191	3300009029	Prmafrost Soil	VFDGDQHIGRIMWTHAAPEDRRWFWTITARVPQSTADRGNAASREEAMADFKAQWRVVN*
Ga0066793_107541992	3300009029	Prmafrost Soil	WSDDDYDVLDGEQHIGRIMWTHAASNETPWFWTITARVPQYPHDRGYAASREEAMADFKARWVAEV*
Ga0066793_108758361	3300009029	Prmafrost Soil	VFDGARHIGRIMWTHAAPEDRRWFWTITARVPQSAYDRGYAASREEAMVDFKAAWGMV*
Ga0066793_108993422	3300009029	Prmafrost Soil	GDQHIGRIVWTHAASADRRWFWTITARVPQSTHDRGYAVSREQAMADFKARWSELV*
Ga0118657_118334311	3300009506	Mangrove Sediment	MFDGEQNVGRIMWTHAAPEDRRWFWTITARIPQSTADRGYATTREEAMADFKTA
Ga0116222_13844841	3300009521	Peatlands Soil	MCALGRLRRHPQAPQGHPWFWTITARVPQYSHDRGYAETREQAMADFKAAWERTE*
Ga0116111_11519102	3300009616	Peatland	VFDGNKHIGRIMWTHATPTDRRWFWTITARVPQYPHDRGYAVTREDAMADFKAR*
Ga0105855_11398882	3300009649	Permafrost Soil	YDVFDGDRHIGHILWTHAAPADRRWFWTITARVPQSTHDRGYAASREQAMADFKAAWECSAA*
Ga0105859_10104653	3300009651	Permafrost Soil	VFDGARHIGRIMWTHSAPADRRWFWTITARVPQSTADRGNEVTRELAMAAFKTAWERKP*
Ga0105858_11680401	3300009661	Permafrost Soil	DDDYDVFDGDRLIGRIMWTDAALEGRRWFWTITARVPQYPHDRSYAASREQAMADFKARWERR*
Ga0116223_103743652	3300009839	Peatlands Soil	DDYDVFDGDRHIGRILWTYAAPEGRRWFWTITARVPQYPHDRGYAANREQAMAEFKAAWERPPPRPAP*
Ga0074045_108452141	3300010341	Bog Forest Soil	DVFDGVRHIGRILWTHAAAKETPWFWTITARVPQYPHDRGYSTTREQAMADFKAAWERSPAPPGALICRE*
Ga0136449_1033811581	3300010379	Peatlands Soil	VFDGDRHIGRILWTHAAPEDGRWFWTITAQVPQYPQDRGYAASREQAMADFKAQWMG*
Ga0136449_1045466961	3300010379	Peatlands Soil	VFDGEGHIGRILWTYAAPEDRRWFWTITARVPQYPHDRGYAVTLEQAMANFKAAWER*
Ga0120134_10283562	3300012004	Permafrost	VLDADRREIGRILWTRSASKETPWFWTITAQLPNTMHDRGYAATREEAMAQFKARWMR*
Ga0153915_113955311	3300012931	Freshwater Wetlands	VFDGDQHIGRIMWTHAANQDTPWFSTITARLPQHPHDRGYEANREQAMADFKAAWEREPSGHFSCTLFR*
Ga0153915_123848722	3300012931	Freshwater Wetlands	DGDQHIGRIMWTHAANRDTPWFWTITARVPQRPYDRGYAAKREEAMADFKARWNVLA*
Ga0181524_102717202	3300014155	Bog	VFDGDRHIGRIMLHPQAPQAQPWFWTITARVPQYPHDRGYAATREDAMADFNAV*
Ga0181524_104684471	3300014155	Bog	MMIDVFDGDRHIGRIMLHPQASEGQPRFWSITARVPQYPHDRGYATTREQAMVDFKAA
Ga0181521_101865382	3300014158	Bog	VPRKLRGRILWTYAAPEDRRWFWTITARVPQYPHDRGYAATREDVMADFKAAWGA*
Ga0181521_103979282	3300014158	Bog	LNPKSVISDRHIGRILWTYAAPEDHRWFWPIAARVPQYPHDRGYAATREQAMADFKAAWERKP*
Ga0181530_101807642	3300014159	Bog	VPRKLRGRILWTYAAPQDRRWFWTITARVPQYPHDRGYAATREQAMADFKARWSALI*
Ga0181523_101697561	3300014165	Bog	WSDDDYDVFDGEQHIGRIMVHPQAPQGQPWFWTITARVPQHPHNRDYAASREQAMADFKVVWSQSTRS*
Ga0181523_105776631	3300014165	Bog	VFEGDRHIGPILWTYAAPVERGWFWTITARLPQYPHDRGYAASREQATADFK
Ga0075304_10114921	3300014307	Natural And Restored Wetlands	FDGERHVGRIMWTYAAPDDRRWFWTITARFPQSTADRGNEATRELAMDEFKAACARKP*
Ga0075352_11514052	3300014324	Natural And Restored Wetlands	HIGRIMLTPQAPDGHHWFWTITARVPQYPHDRGYAASREQAMADFKVLWVGGDL*
Ga0182018_102401802	3300014489	Palsa	RREIGRILWTHSASKETPWFWTITARVPQAPTDRGYAATREDAMAAFKARWGMV*
Ga0182024_106625173	3300014501	Permafrost	VFEGDQHIGRIMWTHATPADRRWFWTITARVPNSMHDRGYAASREQTMADFKARWSV*
Ga0181536_100088666	3300014638	Bog	VFDGEQHIGRIMLHPQAPQGQPWFWTIAARVPQYPHDRGYAATREQAMADFKRAFISATA
Ga0181536_103704772	3300014638	Bog	DLHTGRIMLHPQAPEGAPWFWTIMARVPQYPHDRGYAATSEQAMADFKAAWEKQI*
Ga0181522_100904033	3300014657	Bog	VFDGEQHIGRILWTYAAPEDRRWFWTITARVPQYLHDRGYAATREQAMMDFKAAWGP*
Ga0187825_104145711	3300017930	Freshwater Sediment	DDYDVFDGDRHIGRIVWTHARPEGRRWFWSITFRIPQSLSERGYAASRDDAMVDFKSAWERKA
Ga0187821_101398762	3300017936	Freshwater Sediment	VFDGGQHIGRIMLHPQAPAGAPWFWTITARVPQYPHDRGYAPTREDAMVNFKAAWERKP
Ga0187864_104506562	3300018022	Peatland	MVGRILWTYAAPEDRRWFWTITARVPQYPHDRGYAASREQAMADFKAAWERKP
Ga0187771_114714313	3300018088	Tropical Peatland	GRIMRHPQAPAGQPWFWTITARFPQTPHDRGYAESREQAMADPKTAWLRKSVTMRES
Ga0224548_10216612	3300022518	Soil	VFDGDQHIGRIVWTYAASADRRWFWTITARVPQSTHDRGYAVSREQAMADFQARLRALA
Ga0224545_10093841	3300022881	Soil	VFDGDRHIGRIMWTHAAPADRGWFWTITARCPQLSYDRGYAATREEAMADFKAGWGV
Ga0208850_10084561	3300025457	Arctic Peat Soil	ATCAPTACAWRDDDYDVFDGDQHIGRIVWTHAASADRRWFWTITARVPQSTHDRGYAVSREQAMADFKARLRALA
Ga0208850_10150022	3300025457	Arctic Peat Soil	VFDGDQLIGRILWTHAAPEARRWFWTITARVPQTMYDRGYAETREQAMADFKVQWARD
Ga0208076_10143002	3300025464	Arctic Peat Soil	VFDGERHIGRIMWTHAAPEDRRWFWTITARVPQSPYDRGYAASRDDAMADFKARWNAL
Ga0208479_10183363	3300025474	Arctic Peat Soil	LLAAGGRIMWTHAASRETPWFWTITARVPQYPHDRGYAATREEAMAEFKAAWGA
Ga0208715_10538582	3300025482	Arctic Peat Soil	VFDGERHIGRIMWTHAAPADRRWFWTITVRVPQYPHYRGYAATREEVMANFKAARDREP
Ga0208715_10724421	3300025482	Arctic Peat Soil	DIDYDVWDGNQHIGRIMWTHAGPTDRRWFWTITARVPQSPYDRGYAATREEAMADFKARWTV
Ga0208587_10277832	3300025484	Arctic Peat Soil	VFDGDRHIGRIMWTRAASRDTPWFWTITTRVPQSTADRSYAASREQAMADFKARWSALF
Ga0207929_10082604	3300025505	Arctic Peat Soil	VFDGERHIGRIMWTHAAPADRRWFWTSTVRVPQYPHYRGYAATREEVMANFKA
Ga0207929_10105574	3300025505	Arctic Peat Soil	VFDGDQHIGRIVWTHAGSADRRWFWTITARVPQYPHDRGYAASREAAIADFKAAWERDLC
Ga0208848_10150161	3300025509	Arctic Peat Soil	VFDGDQHIGRIVWTHAAPADRRWFWTITARVPQSTHDRGYAVSREQAMADFKARLRALA
Ga0208078_10045836	3300025544	Arctic Peat Soil	VFDGERHIGRIMWTHAAPADRRWFWTITVRVPQYPHDRGYAATREEVMANFKAARDREP
Ga0208078_10081721	3300025544	Arctic Peat Soil	EQHIGRIMWTHAAPEDRRWFWTITARVPQSPYDRGYAASRDDAMADFKARWNAL
Ga0208078_10106764	3300025544	Arctic Peat Soil	YDAFDGDRHIGRIMWTHAAPADRKWFWTITARVPQYPHDRGYAATREDAMAEFKAAWGL
Ga0208080_10229611	3300025553	Arctic Peat Soil	VFDGDRHIGPHHAAPKDRRWFWTITARCPQMPYDRGYAASHELAMADFKARWNGVT
Ga0207930_10365402	3300025604	Arctic Peat Soil	VYDGDRHIGRIMWTHAASADRRWFWTITARVPQGPYDRGYAATREEAMADFKARWHALV
Ga0207930_10784581	3300025604	Arctic Peat Soil	DDDYDVWDGNQHIGRIMWTHATPADRRWFWTITVRMPQYPHDRGYAASRELAMGDFKARWTA
Ga0207930_11263111	3300025604	Arctic Peat Soil	DVFDGERHIGRIMWTHAAPADRRWFWTITVRVPQYPHYRGYAATREEVMANFKAARDREP
Ga0208219_10170421	3300025625	Arctic Peat Soil	WSADDYDVFDGEQHIGRIMWTHAAPEDRRWFWTITARVPQSTHDRGYAATREDAMADFKAAWERKP
Ga0210068_10130731	3300025953	Natural And Restored Wetlands	KNIGGILWTYAAPAECRWFWTITARLPQTTADRGYASTREEAMADFKAAYGRQCFALGCQ
Ga0209888_10446891	3300026274	Permafrost Soil	VFEGDQHIGRIMWTYAANRDTPWFWSITARVPQSTADRGYAASREQAMADFKARWRAVNRHRLIDVA
Ga0209890_102295421	3300026291	Soil	KNRVRDLGDIDRPRSRTWTHAAPEDRRWFWTITARLPQHPHDRGYAATREDAMANFKAAWERPA
Ga0209839_100309053	3300026294	Soil	VFDGEQHIGRIMWTHAAPEDRRLFWTITVRVPQSAHDRGYAATLEEAMAGFKTAWECSAT
Ga0307444_10629753	3300031360	Salt Marsh	PPGRPWFWTITARAPQHPHDRGYAESREQAMADFKTAWQRKSVVVRRI
Ga0307436_10157193	3300031563	Salt Marsh	VFDGERHIGRIMLATAAPQDRPWFWSITARVPQSTHDRGYAATREDAMSAFKAAWEREP
Ga0214473_108087243	3300031949	Soil	VFDGERHIGRIMHHPQAPEGEPWFWTITARVPQSTADRGYAATREEAMADFKAAWER
Ga0311301_108297802	3300032160	Peatlands Soil	MMIDVFDGDRHIGRIMLHPQASEGQPRFWSITARVPQYPHDRGYATTREQAMVDFKAAWERPPPRPVP
Ga0311301_109647843	3300032160	Peatlands Soil	MCALGRLRRHPQAPQGHPWFWTITARVPQYSHDRGYAETREQAMADFKAAWERTE
Ga0370484_0174232_2_223	3300034125	Untreated Peat Soil	RWEAACTWSDDDYDVFDGARHIGRIMWTHAAPEDRRWFWTITARVPQSPYDRGYAATREEAMMDFKAAWEHEP
Ga0370484_0235988_268_465	3300034125	Untreated Peat Soil	MVGRRLRRIQQRPIGRILWTHAASEDRRWFRTITVRVPQSTHDRGYAASREQAMADFKVRWGAAH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092930

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences