Metagenome / Metatranscriptome Family F092928

Basic Information
Family ID	F092928
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	46 residues
Representative Sequence	AAFEEMVLAQGLGDADRQAPRDEKGDRGAGAQVGRDHAPHLG
Number of Associated Samples	97
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.89 %
% of genes near scaffold ends (potentially truncated)	97.20 %
% of genes from short scaffolds (< 2000 bps)	90.65 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Most Common Taxonomy
Group	Bacteria (98.131 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.280 % of family members)
Environment Ontology (ENVO)	Unclassified (17.757 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.925 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.86% β-sheet: 0.00% Coil/Unstructured: 77.14%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04392	ABC_sub_bind	3.74
PF13546	DDE_5	0.93
PF13185	GAF_2	0.93
PF03641	Lysine_decarbox	0.93
PF03466	LysR_substrate	0.93
PF03306	AAL_decarboxy	0.93
PF13531	SBP_bac_11	0.93
PF02082	Rrf2	0.93
PF02518	HATPase_c	0.93
PF13649	Methyltransf_25	0.93
PF01965	DJ-1_PfpI	0.93
PF00166	Cpn10	0.93
PF13384	HTH_23	0.93
PF00211	Guanylate_cyc	0.93
PF01227	GTP_cyclohydroI	0.93
PF06724	DUF1206	0.93
PF14487	DarT	0.93
PF02371	Transposase_20	0.93
PF00982	Glyco_transf_20	0.93
PF16868	NMT1_3	0.93
PF13545	HTH_Crp_2	0.93
PF03060	NMO	0.93
PF11578	DUF3237	0.93
PF02211	NHase_beta	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.74
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3527	Alpha-acetolactate decarboxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.93
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.93
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.93
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.93
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.93
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.93
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.93
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	0.93
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.93
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.93
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.93
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.13 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	71.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.69 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	71.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.08 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	71.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.48 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.87 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	71.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	71.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Unclassified	root	N/A	1.87 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	71.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Unclassified	root	N/A	1.87 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000545\|CNXas_1014026	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	574	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1022467	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1184	Open in IMG/M
3300000679\|JGI12586J11914_101540	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	517	Open in IMG/M
3300000721\|JGI12410J11868_105231	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	509	Open in IMG/M
3300001305\|C688J14111_10181934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300001394\|JGI20191J14862_1050579	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	541	Open in IMG/M
3300001396\|JGI20175J14863_1042115	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	518	Open in IMG/M
3300001545\|JGI12630J15595_10110117	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	543	Open in IMG/M
3300001545\|JGI12630J15595_10124075	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	511	Open in IMG/M
3300002899\|JGIcombinedJ43975_10087103	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	560	Open in IMG/M
3300002907\|JGI25613J43889_10132418	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	636	Open in IMG/M
3300002917\|JGI25616J43925_10130539	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1016	Open in IMG/M
3300003352\|JGI26345J50200_1033336	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	566	Open in IMG/M
3300003370\|JGI26337J50220_1041343	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	526	Open in IMG/M
3300003911\|JGI25405J52794_10095100	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	662	Open in IMG/M
3300004013\|Ga0055465_10318508	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	538	Open in IMG/M
3300004635\|Ga0062388_102010598	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	598	Open in IMG/M
3300005159\|Ga0066808_1041919	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	500	Open in IMG/M
3300005160\|Ga0066820_1001735	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	996	Open in IMG/M
3300005160\|Ga0066820_1011248	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	604	Open in IMG/M
3300005163\|Ga0066823_10088295	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	619	Open in IMG/M
3300005177\|Ga0066690_11007192	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	523	Open in IMG/M
3300005289\|Ga0065704_10114990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1880	Open in IMG/M
3300005294\|Ga0065705_10734636	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	637	Open in IMG/M
3300005330\|Ga0070690_101724390	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	510	Open in IMG/M
3300005331\|Ga0070670_100552496	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1027	Open in IMG/M
3300005331\|Ga0070670_101526210	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	614	Open in IMG/M
3300005332\|Ga0066388_100800182	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1535	Open in IMG/M
3300005332\|Ga0066388_104519931	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	708	Open in IMG/M
3300005332\|Ga0066388_106784828	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	577	Open in IMG/M
3300005332\|Ga0066388_106833718	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	574	Open in IMG/M
3300005340\|Ga0070689_100760924	All Organisms → cellular organisms → Bacteria → Proteobacteria	849	Open in IMG/M
3300005341\|Ga0070691_10709862	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	604	Open in IMG/M
3300005354\|Ga0070675_101029048	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	756	Open in IMG/M
3300005364\|Ga0070673_101569424	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	621	Open in IMG/M
3300005406\|Ga0070703_10161476	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300005437\|Ga0070710_11181884	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	565	Open in IMG/M
3300005437\|Ga0070710_11467024	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	512	Open in IMG/M
3300005444\|Ga0070694_100239730	All Organisms → cellular organisms → Bacteria	1367	Open in IMG/M
3300005455\|Ga0070663_101000929	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	727	Open in IMG/M
3300005456\|Ga0070678_100556809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1018	Open in IMG/M
3300005467\|Ga0070706_101476655	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	621	Open in IMG/M
3300005518\|Ga0070699_100124740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2266	Open in IMG/M
3300005518\|Ga0070699_101332164	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	658	Open in IMG/M
3300005518\|Ga0070699_102196014	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	504	Open in IMG/M
3300005536\|Ga0070697_100161593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1892	Open in IMG/M
3300005713\|Ga0066905_101551593	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005841\|Ga0068863_101323479	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	727	Open in IMG/M
3300005994\|Ga0066789_10367050	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	601	Open in IMG/M
3300006057\|Ga0075026_100510532	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	693	Open in IMG/M
3300006059\|Ga0075017_100080428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2241	Open in IMG/M
3300009553\|Ga0105249_13350043	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	516	Open in IMG/M
3300015373\|Ga0132257_101889930	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	768	Open in IMG/M
3300016270\|Ga0182036_10107380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1910	Open in IMG/M
3300016294\|Ga0182041_11092808	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	724	Open in IMG/M
3300016341\|Ga0182035_10251909	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1426	Open in IMG/M
3300016445\|Ga0182038_10916737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300017821\|Ga0187812_1174059	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	690	Open in IMG/M
3300017924\|Ga0187820_1002187	All Organisms → cellular organisms → Bacteria	4438	Open in IMG/M
3300017934\|Ga0187803_10400842	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	556	Open in IMG/M
3300017943\|Ga0187819_10200167	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1179	Open in IMG/M
3300017995\|Ga0187816_10551089	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	519	Open in IMG/M
3300018015\|Ga0187866_1296026	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	569	Open in IMG/M
3300018021\|Ga0187882_1248734	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	688	Open in IMG/M
3300018024\|Ga0187881_10270129	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	709	Open in IMG/M
3300018067\|Ga0184611_1146468	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	835	Open in IMG/M
3300018067\|Ga0184611_1343054	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	513	Open in IMG/M
3300018476\|Ga0190274_10567882	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1153	Open in IMG/M
3300019356\|Ga0173481_10084770	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300020065\|Ga0180113_1344233	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	558	Open in IMG/M
3300021168\|Ga0210406_11018291	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	615	Open in IMG/M
3300021474\|Ga0210390_10019634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5486	Open in IMG/M
3300021560\|Ga0126371_11649139	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	766	Open in IMG/M
3300022518\|Ga0224548_1011970	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	965	Open in IMG/M
3300022880\|Ga0247792_1106905	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	578	Open in IMG/M
3300024037\|Ga0233355_100481	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	878	Open in IMG/M
3300025453\|Ga0208455_1097804	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	561	Open in IMG/M
3300025459\|Ga0208689_1010101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3134	Open in IMG/M
3300025507\|Ga0208188_1067341	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	860	Open in IMG/M
3300025509\|Ga0208848_1014825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1658	Open in IMG/M
3300025940\|Ga0207691_11315053	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	597	Open in IMG/M
3300026035\|Ga0207703_11814032	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300026223\|Ga0209840_1140315	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	511	Open in IMG/M
3300027061\|Ga0209729_1037002	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	613	Open in IMG/M
3300027173\|Ga0208097_1004337	Not Available	1440	Open in IMG/M
3300027288\|Ga0208525_1003301	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300027310\|Ga0207983_1034487	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	642	Open in IMG/M
3300027909\|Ga0209382_10867219	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	954	Open in IMG/M
3300028712\|Ga0307285_10114679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	720	Open in IMG/M
3300030659\|Ga0316363_10036947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2438	Open in IMG/M
3300031226\|Ga0307497_10034803	All Organisms → cellular organisms → Bacteria → Proteobacteria	1671	Open in IMG/M
3300031236\|Ga0302324_100693875	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1438	Open in IMG/M
3300031280\|Ga0307428_1171437	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	536	Open in IMG/M
3300031525\|Ga0302326_10305340	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2539	Open in IMG/M
3300031718\|Ga0307474_10144421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	1793	Open in IMG/M
3300031724\|Ga0318500_10729536	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	506	Open in IMG/M
3300031744\|Ga0306918_10712302	All Organisms → cellular organisms → Bacteria → Proteobacteria	785	Open in IMG/M
3300031764\|Ga0318535_10236520	All Organisms → cellular organisms → Bacteria → Proteobacteria	817	Open in IMG/M
3300031768\|Ga0318509_10809009	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	518	Open in IMG/M
3300031890\|Ga0306925_11351083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M
3300031910\|Ga0306923_10219186	All Organisms → cellular organisms → Bacteria → Proteobacteria	2176	Open in IMG/M
3300031947\|Ga0310909_10787428	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	786	Open in IMG/M
3300032044\|Ga0318558_10245381	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	880	Open in IMG/M
3300032059\|Ga0318533_10048760	All Organisms → cellular organisms → Bacteria	2813	Open in IMG/M
3300033290\|Ga0318519_10086159	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1663	Open in IMG/M
3300033433\|Ga0326726_12261659	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	528	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.98%
Host-Associated	Host-Associated	14.02%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.36%
Aquatic	Environmental → Aquatic	19.63%
Plants	Host-Associated → Plants	14.02%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.62%
Freshwater	Environmental → Aquatic → Freshwater	14.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.54%
Sediment	Environmental → Aquatic → Sediment	3.74%
Peat	Environmental → Terrestrial → Peat	3.74%
Marine	Environmental → Aquatic → Marine	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.32%
Loam	Environmental → Terrestrial → Soil → Loam	22.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.28%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.80%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.80%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.28%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.74%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.80%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000545	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled	Host-Associated	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000679	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23	Environmental	Open in IMG/M
3300000721	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001394	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012	Environmental	Open in IMG/M
3300001396	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005159	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB	Environmental	Open in IMG/M
3300005160	Soil and rhizosphere microbial communities from Laval, Canada - mgLMB	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022518	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300024037	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-Q75	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025459	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026223	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027310	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031280	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-240	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
CNXas_10140262	3300000545	Quercus Rhizosphere	RRDDAGNALRSSAEHDAFKKMVLAQGVGHADRQAPRDEKGDRGARAPAGRDHAPHLG*
AF_2010_repII_A100DRAFT_10224671	3300000655	Forest Soil	VLAQGLGDEDRQASRDEEGDRGAGASVGRDHASRVG*
JGI12586J11914_1015401	3300000679	Tropical Forest Soil	VAQGLGDAGRQAPRHEESDCRAGPPVGGDHAPRLG*
JGI12410J11868_1052312	3300000721	Tropical Forest Soil	RRDDAHDALRSGPEHAVPFDKMVLAQGLGDEDRQASRDEEGGRGAGASLSRDHAPHLG*
C688J14111_101819341	3300001305	Soil	MARDRSVMVLAQSLGDADRQASRDEKGDRGPGTPVGCDN
JGI20191J14862_10505792	3300001394	Arctic Peat Soil	HALRSSSEHAAFEEMVLAQGLGDADRQAARDEKGDRCAGAPARRNHAPHMG*
JGI20175J14863_10421151	3300001396	Arctic Peat Soil	DAFEEMVLAQGLGDADRQAPRNEKGDRGLGAPIGRDHAPHMG*
JGI12630J15595_101101171	3300001545	Forest Soil	DDADDALRSSSEHDAFKKMVLAQGVGHADRQATRDEKGDRGPGSPVGRDHAPHLG*
JGI12630J15595_101240752	3300001545	Forest Soil	DDADDALRSSSEHDAFKKMVLAQGVGHADRQAPRDEKGDRGAGTPIGRDHAPYLG*
JGIcombinedJ43975_100871031	3300002899	Soil	SSEHAAVEEMVLAQSLGDADRQAPRDEKGDRGPGTPVGCDHAPHMG*
JGI25613J43889_101324182	3300002907	Grasslands Soil	GPEHAGAFGKMVLAQGLGDKDRQASRDEEGDRGAGASVGRDHAPHVG*
JGI25616J43925_101305391	3300002917	Grasslands Soil	CAFGEMVLAQGLGDEDRQASRDEEGDRRAGAAASGDHASHLG*
JGI26345J50200_10333362	3300003352	Bog Forest Soil	GHALRSSPEHDAFEEMVMAQGLGDADRQAAGDEKGDRGLGTAAGRDHAPHLG*
JGI26337J50220_10413432	3300003370	Bog Forest Soil	FGEMVLAQGLGDEDRQASRNEEGDRGAGATVGRDHAPHLG*
JGI25405J52794_100951001	3300003911	Tabebuia Heterophylla Rhizosphere	DDAGHALRGGADPADARNKMVLAQGLGDAGRQAPRDEKGDRRIGAPAGRDHAPRLD*
Ga0055465_103185081	3300004013	Natural And Restored Wetlands	PRHQMVVAQGLGHEDRQVSRDEEGDRRPGPPVDRDHAPHLG*
Ga0062388_1020105982	3300004635	Bog Forest Soil	RDDADDALRSGPEHAVPFDKEVLAQGLGHEGRQAPRDEEGGRGAGAPPRRDHAPHLG*
Ga0066808_10419191	3300005159	Soil	AGHALRSSSEHAAVEEMVLAQSLGDADRQASRDEKGDRGPGTPIGCDYAPHMG*
Ga0066820_10017354	3300005160	Soil	GHALRSSSEHAAFEEMVVAQGLGDADRQAPWEEKSDRGPGASVGRDHAPHLG*
Ga0066820_10112481	3300005160	Soil	DDAGHALRSSSEHAAFEEMVVAQGLGDADRQAPWEEESDRGLGASVGRDHAPHLG*
Ga0066823_100882951	3300005163	Soil	DAGHALRSSSEHAAFEEMVVAQGLGDADRQAPWEEESDRGLGASVGRDHAPHLG*
Ga0066690_110071921	3300005177	Soil	ITVRRRDDADDALRSGPEHAGAFGEMVLAQGLGDEDRQASRDEKGDRGAGASVGRDHAPRVG*
Ga0065704_101149903	3300005289	Switchgrass Rhizosphere	SKHVAFEEMVVAQGLGDADRQAPWDEKGDRGVGASAGRDHAPHVG*
Ga0065705_107346361	3300005294	Switchgrass Rhizosphere	LWRSDDAGHALRGGSEHDALEEMVMAQGLGNADRQAPRDEKGDRRAGPPVGRDHAPHLG*
Ga0070690_1017243901	3300005330	Switchgrass Rhizosphere	AFEEMVMAQGLGDTDRQTPRHEEGNRGAGASIGRDPAPHMG*
Ga0070670_1005524961	3300005331	Switchgrass Rhizosphere	AHDALRSCAEHDAFKKVVMAQGLGHADRQAPRNEEGDRGPGAPTGRHHAPDMG*
Ga0070670_1015262102	3300005331	Switchgrass Rhizosphere	ERQNIPLRRRDDAGHALRSSSEYAAFEEMVMAQGLGDTDRQTPRHEEGNRGAGAPIGRDPAPHMG*
Ga0066388_1008001824	3300005332	Tropical Forest Soil	SSEHVAVEEMVVAQGLGDADCQAPRDEKGDRSPSPSLGRDHAPHLG*
Ga0066388_1045199312	3300005332	Tropical Forest Soil	LEYVPFAKMVLAQGLGDEGRQAPRDEEGDRSPGTSVGRDHAPHLG*
Ga0066388_1067848281	3300005332	Tropical Forest Soil	AFEEMVLAQGLGDADRQAPRDEKGDRGLGTPVGRDHAPHMG*
Ga0066388_1068337181	3300005332	Tropical Forest Soil	GAFDEMVLAQGLGDEDRQASRDEKGDRGAGASAGRDHASHLG*
Ga0070689_1007609241	3300005340	Switchgrass Rhizosphere	CSEHDAFKKMVLAQGVGHADRQAPRDEKGDRGLGTPARRDHASHMG*
Ga0070691_107098621	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	AFEEMVVAQGLGDADRQAPWDEKGDRGAGAPVGRDHAPDMG*
Ga0070675_1010290481	3300005354	Miscanthus Rhizosphere	DALRGSAEHAAFEEMVVAQGLGDADRQAPWDEKGDRGAGASTGRDHAPHMG*
Ga0070673_1015694242	3300005364	Switchgrass Rhizosphere	FEEMVVAQGLGDADRQAPWDEKGDRGAGAPVGRDHAPHVG*
Ga0070703_101614761	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	LRRRDDAGDALRGSSEHVAFEEMVVAQGLGDADRQAPWDEKGDRGVGASAGRDHAPHVG*
Ga0070710_111818842	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	EEMVLAQGLGDADRQAPRDEEGDRGPGTPVGRDHAPHLG*
Ga0070710_114670242	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	RDDADDALRSSSGHAAFKEMVVAQGLGDADRQAPWNEKGDRGAGPASGRGHAPHLG*
Ga0070694_1002397303	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	NITLRRRDDAGDALRGSSEHAAFEEMVVAQGLGDADRQTPWDEKGDRGAGAPVGRDHAPHMG*
Ga0070663_1010009292	3300005455	Corn Rhizosphere	AFEEMVLAQGLGDADRQAPRDEEGYCGVGTPASRDHASHMG*
Ga0070678_1005568092	3300005456	Miscanthus Rhizosphere	HAAFEEMVLAQGLGDADRQAPRDEKGDRGAGAQVGRDHAPYLG*
Ga0070706_1014766551	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VRRRDDADDALRSGPEHAGAFDEMVLAQGLGNEGRQASRDEEGDRGAGASVGRDHAPRVG
Ga0070699_1001247401	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	RSSSEHAAVEEMVLAQSLGEADRQAPRDEKGDRGPGTPVGCDHAPHMG*
Ga0070699_1013321641	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	DAFDEMVLAQGLGDESRQASRDEEGDRGAGASVGRDHAPRVG*
Ga0070699_1021960141	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	RRRDDAGHALRSSPEHAAFEEMVVAQGLGDADRQASRDEKGDRGAGASVSRDHAPHMG*
Ga0070697_1001615934	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	DITVRRRDDADDALRSGPEHAGTFGEMVLAQGLGDEDRQASRDKEGDRGAGASVGRDHASHVG*
Ga0066905_1015515931	3300005713	Tropical Forest Soil	GAFDEMVLAQGLGDEGRQASRDEEGDRGAGASLGRDHAPHVD*
Ga0068863_1013234791	3300005841	Switchgrass Rhizosphere	AQGLGNADRQAPRDEKGDRRAGPPVGRDHAPYLG*
Ga0066789_103670502	3300005994	Soil	AAFEEMVLAQGLGDADRQAPRDEKGDRGAGAQVGRDHAPHLG*
Ga0075026_1005105321	3300006057	Watersheds	AGHALRSSSEHAAFEEMVVAQGLGDADRQAPWEEKSDRGLGASVGRDHAPHLG*
Ga0075017_1000804285	3300006059	Watersheds	DDAGDALRSSSEHDAFKEMVMAQGLGHADRQAPRDEEGDRGPGTPASRDHAPNMG*
Ga0105249_133500431	3300009553	Switchgrass Rhizosphere	EMVMAQGLSDTDRQTPRHEEGNRGAGAPIGRDPAPHMG*
Ga0132257_1018899302	3300015373	Arabidopsis Rhizosphere	TFVKMVMAQGLGDEDCQAPRNEKGNRCTSATLGRHYAPHLD*
Ga0182036_101073801	3300016270	Soil	HAGAFDEMVLAQGLGDEDRQASRDEKGDRGAGASVGRDHAPHVG
Ga0182041_110928081	3300016294	Soil	AATFGKMVVAQGLGDEDRQAPRDEKGNRCTGSTVGRDYASRLD
Ga0182035_102519091	3300016341	Soil	IGALDKMVLAQSLGDADRQAARHEKSDRRAGPPIGGDHAPHLG
Ga0182038_109167371	3300016445	Soil	AALEEMVLAQGLGDADRQASGDEKGNRRPGATVGGDHAPHLG
Ga0187812_11740591	3300017821	Freshwater Sediment	EHAVFEEMVVAQGLGDADRQAPRDEKGDRGTGTPVGRDYAPHMG
Ga0187820_10021875	3300017924	Freshwater Sediment	MRRRDDAGHALRSSSKHAAFEEMIMAQGLGDAGHQALRNEKGDRRPGIPVGRHFAPFLG
Ga0187803_104008422	3300017934	Freshwater Sediment	SEYDAFQEMVMAQGLGDADRQALRDEKGDRGAGAPIGRDHAPHLG
Ga0187819_102001673	3300017943	Freshwater Sediment	AGAFNKMVLAQGLGDEDRPAPRGEKGNRGAGATAGCDHASHLG
Ga0187816_105510891	3300017995	Freshwater Sediment	KHAAVEEMVLAQGLGDADRQAPRDKKGDRGLGTPVGRDHAPHMG
Ga0187866_12960261	3300018015	Peatland	FEEMVVAQGLGDADRQAPRDEKGDRGPGTPVGRDHAPYLG
Ga0187882_12487341	3300018021	Peatland	AFEEMVVAQGLGDADRQAPRDEKGDRGPGTPVGRDHAPHLG
Ga0187881_102701291	3300018024	Peatland	EMVVAQGLGDADRQAPRDEKGDRGPGTPVGRDHAPHLG
Ga0184611_11464682	3300018067	Groundwater Sediment	SPGRSASRGGSEHDALEVMVMAQGLGNADRQAARDEEGDRRADAQVGRDHAPHLG
Ga0184611_13430541	3300018067	Groundwater Sediment	GKMVMAQSLGDEDRQAPWAETIVGPGAPIGRDHAPHMG
Ga0190274_105678821	3300018476	Soil	EEMVMAQGLGDADRQAPRDEKGDRGAGAPVGRDHAPHMG
Ga0173481_100847701	3300019356	Soil	RSCAEHDAFKKVVMAQGLGHADRQAPRDEKGDRGLGTPARRDHASHMG
Ga0180113_13442331	3300020065	Groundwater Sediment	HAGAFGKMVLAQGLGDEDRQAPRAEKGDCGLGASIGRDHAPHMG
Ga0210406_110182912	3300021168	Soil	DDANDALRSGADRAGAFDEMVLAQGLGDEDRQAPWDEEGDRGVGAAVGRNHAPHMG
Ga0210390_100196349	3300021474	Soil	LRGRPEAGSFDEMVLVQGLGDEDRQASWDEKGDRGASAPIGRDYAPRLG
Ga0126371_116491391	3300021560	Tropical Forest Soil	MVVAQGLGDADRQTPRDEEGHCRAGTTAGRDPAPHLG
Ga0224548_10119701	3300022518	Soil	DMVMAQGLGDADRQASRNEEGDCGAGAPIGRDHALHMG
Ga0247792_11069051	3300022880	Soil	EEMVLAQGLGDAGRQAPWDEKGDRGPGAPVGCDHAPHMG
Ga0233355_1004811	3300024037	Soil	AAFEEMVLAQGLGDADREAPRDEEGDRGPGAPAGRDHAPHMG
Ga0208455_10978042	3300025453	Peatland	FEEMVLAQGLGDADRQAPWEEKGDRGAGTPVGRDHASHMG
Ga0208689_10101011	3300025459	Peatland	ALRSSSEYAAFEEMVLAQGLGDADRQAPRDEKGDRGPGAPVGRDHAPHMG
Ga0208188_10673414	3300025507	Peatland	MVLAQGLGDADRQAPRDEKGDRGAGTPVSRDHAPHLG
Ga0208848_10148252	3300025509	Arctic Peat Soil	AAFEEMVLAQGLGDADRQASRDEEGDRGPGAPAGRDHAPHMG
Ga0207691_113150531	3300025940	Miscanthus Rhizosphere	RQNITLRRRDDAGDALRGSAEHAAFEEMVVAQGLSDADRQTPWDEKGDRGAGAPVGRDHAPHMG
Ga0207703_118140321	3300026035	Switchgrass Rhizosphere	MARDRSVMVLAQSLGDADRQASRDEKGDRGPGTPVGC
Ga0209840_11403151	3300026223	Soil	MVMAQGLGDADRQAPRDEKGDRGPGAPIGRDHAPYMG
Ga0209729_10370021	3300027061	Forest Soil	PDSSDAFDTMVMAQGLGDAGRQASREKEGHRRPGATVSRDPAPHLG
Ga0208097_10043372	3300027173	Forest Soil	HAAFEEMVLAQGLGHADRQTPRDEKGDRGPGAPVGRDHAPYVDRWH
Ga0208525_10033012	3300027288	Soil	MVLAQSLGDADRQASRDEKGDRGPGTPVGCDNAPHMG
Ga0207983_10344871	3300027310	Soil	HAAFEEMVLAQGLGDADRQAPRGKKSDRGPGTPVGCDHAPYLG
Ga0209382_108672191	3300027909	Populus Rhizosphere	EEMVVAQGLGDADRQAPWDEKGDRGAGAPVGRDHAPDLG
Ga0307285_101146791	3300028712	Soil	MARDRSVMVLAQSLGDADRQASRDEKGDRGPGTPVGCD
Ga0316363_100369473	3300030659	Peatlands Soil	AGAFGEVVLAQGLGHEDRQAPRDEEGDRGAGAPVSGDHAPHLG
Ga0307497_100348033	3300031226	Soil	LRSGSGHVAFKEMVLAQGLGHEDRQAPRDEEGNRGPGAPVGRDHAPHLG
Ga0302324_1006938751	3300031236	Palsa	GSSEHAAVEEMVVAQGLGDADRQATRHEKSDRGPGSQVGRDPAPHLG
Ga0307428_11714371	3300031280	Salt Marsh	SSPEHAAFEEMVLAQGLGDADRQASRDEKGDRSPGAPIGRHHAPHMG
Ga0302326_103053403	3300031525	Palsa	EMVVAQGLGDADRQATRHEKSDRGPGSQVGRDPAPHLG
Ga0318560_104349452	3300031682	Soil	MVLAQGLGDEDRQAPRDEKGNRCTSATLGRHYASERP
Ga0307474_101444211	3300031718	Hardwood Forest Soil	KMVLAQGLGDADCQASRDEEGGGGAGASLSRDHASHLG
Ga0318500_107295361	3300031724	Soil	VPFDKMVLAQGLGDADRQASRDEEGGRGAGASLGRDHASHLG
Ga0306918_107123023	3300031744	Soil	FDKMVLAQGLGDADRQASRDEEGGRGAGASLGRDHASHLG
Ga0318535_102365202	3300031764	Soil	GHAATFGKMVVAQGLGDEDRQAPRDEKGNRCTGSTVGRDYASHLD
Ga0318509_108090091	3300031768	Soil	GHAATFGKMVVAQGLGDEDRQAPRDEKGNRRTGSTVGRDYASHLD
Ga0306925_113510831	3300031890	Soil	DEMVLAQGLGDEGRQASRDEEGDRGAGASVGRDHAPRVG
Ga0306923_102191865	3300031910	Soil	ALRSGPGHADPHQQVVMAQGLGSKDRQAPRDEEGDRGAGASASRDPAPHLG
Ga0310909_107874281	3300031947	Soil	FNKVVLAQGLGDADRQTSRDEKGDRGLGTPDGRDHAPHMG
Ga0318558_102453811	3300032044	Soil	ADDAVRSGPEHVGAFGKMVLAQGLGDEDRQASRDEEGDRGAGASLGRDYASRVG
Ga0318533_100487604	3300032059	Soil	EEMVLAQGLGYANRQAPRNEEGDRGPGASIGRDHASHLG
Ga0318519_100861591	3300033290	Soil	IAVRRRDDADDALRSGPEHAGAFGEMVLAQGLGDEDRQASRDKEGDRGAGAPVGRDHAPHVGWRHRVPVD
Ga0326726_122616591	3300033433	Peat Soil	LRSSSEYAAFEEMVLAQGLGDADRQTPRDEKGDRGAGAPVGRDHAPHMG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092928

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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