Metagenome / Metatranscriptome Family F092901

Basic Information
Family ID	F092901
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	45 residues
Representative Sequence	MSGTENSPTATLDEHLRLGAGFAAADRPRILEALSALAPHLSG
Number of Associated Samples	82
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.20 %
% of genes near scaffold ends (potentially truncated)	96.26 %
% of genes from short scaffolds (< 2000 bps)	83.18 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Most Common Taxonomy
Group	Bacteria (83.178 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (40.187 % of family members)
Environment Ontology (ENVO)	Unclassified (40.187 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.009 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.89% β-sheet: 0.00% Coil/Unstructured: 52.11%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00248	Aldo_ket_red	3.74
PF12728	HTH_17	2.80
PF08240	ADH_N	2.80
PF13561	adh_short_C2	1.87
PF05598	DUF772	1.87
PF01546	Peptidase_M20	1.87
PF02518	HATPase_c	1.87
PF14026	DUF4242	1.87
PF03699	UPF0182	1.87
PF02021	UPF0102	1.87
PF00144	Beta-lactamase	0.93
PF01408	GFO_IDH_MocA	0.93
PF13551	HTH_29	0.93
PF02782	FGGY_C	0.93
PF02517	Rce1-like	0.93
PF01022	HTH_5	0.93
PF11774	Lsr2	0.93
PF00999	Na_H_Exchanger	0.93
PF02861	Clp_N	0.93
PF04321	RmlD_sub_bind	0.93
PF04237	YjbR	0.93
PF00589	Phage_integrase	0.93
PF03992	ABM	0.93
PF03640	Lipoprotein_15	0.93
PF00041	fn3	0.93
PF12796	Ank_2	0.93
PF01636	APH	0.93
PF00583	Acetyltransf_1	0.93
PF00196	GerE	0.93
PF00912	Transgly	0.93
PF06738	ThrE	0.93
PF02585	PIG-L	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	1.87
COG1615	Uncharacterized membrane protein, UPF0182 family	Function unknown [S]	1.87
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	1.87
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	1.87
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	1.87
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.93
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.93
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.93
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.93
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.93
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.93
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.93
COG2966	Uncharacterized membrane protein YjjP, DUF1212 family	Function unknown [S]	0.93
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.93
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.93
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.93
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.93
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.93
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1091	dTDP-4-dehydrorhamnose reductase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1090	NAD dependent epimerase/dehydratase family enzyme	General function prediction only [R]	0.93
COG1089	GDP-D-mannose dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1088	dTDP-D-glucose 4,6-dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1087	UDP-glucose 4-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.93
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.18 %
Unclassified	root	N/A	16.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.18 %
Unclassified	root	N/A	16.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.18 %
Unclassified	root	N/A	16.82 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	75.70 %
Unclassified	root	N/A	16.82 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	71.03 %
Unclassified	root	N/A	16.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.80 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	61.68 %
Unclassified	root	N/A	16.82 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	1.87 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Sporichthyales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales	32.71 %
Unclassified	root	N/A	16.82 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	8.41 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	1.87 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Sporichthyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae	32.71 %
Unclassified	root	N/A	16.82 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	3.74 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Sporichthyaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae	32.71 %
Unclassified	root	N/A	16.82 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	2.80 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.93 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Sporichthyaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	32.71 %
Unclassified	root	N/A	16.82 %
Friedmanniella luteola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	2.80 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Nocardioides ungokensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides ungokensis	0.93 %
Arthrobacter tumbae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter tumbae	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2290935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides ungokensis	930	Open in IMG/M
3300000550\|F24TB_10592097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	581	Open in IMG/M
3300000559\|F14TC_104674018	Not Available	553	Open in IMG/M
3300001431\|F14TB_101087390	Not Available	575	Open in IMG/M
3300002568\|C688J35102_120700192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1377	Open in IMG/M
3300004463\|Ga0063356_101844459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	910	Open in IMG/M
3300004479\|Ga0062595_100159188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1329	Open in IMG/M
3300004479\|Ga0062595_101250262	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300005161\|Ga0066807_1016771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	722	Open in IMG/M
3300005844\|Ga0068862_102651612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	513	Open in IMG/M
3300006058\|Ga0075432_10445036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	567	Open in IMG/M
3300006605\|Ga0074057_11988449	All Organisms → cellular organisms → Bacteria → Terrabacteria group	684	Open in IMG/M
3300006844\|Ga0075428_100123658	Not Available	2816	Open in IMG/M
3300006845\|Ga0075421_100089104	Not Available	3888	Open in IMG/M
3300006847\|Ga0075431_100203730	Not Available	2024	Open in IMG/M
3300006871\|Ga0075434_100024040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5951	Open in IMG/M
3300006871\|Ga0075434_100043923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4433	Open in IMG/M
3300006894\|Ga0079215_11011619	Not Available	612	Open in IMG/M
3300007004\|Ga0079218_10342577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1240	Open in IMG/M
3300009094\|Ga0111539_10037549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	5848	Open in IMG/M
3300009100\|Ga0075418_11627369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	701	Open in IMG/M
3300009147\|Ga0114129_11462302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	841	Open in IMG/M
3300009553\|Ga0105249_11139459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	850	Open in IMG/M
3300009789\|Ga0126307_10421134	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300009789\|Ga0126307_10435205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1058	Open in IMG/M
3300009789\|Ga0126307_11687334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	515	Open in IMG/M
3300009840\|Ga0126313_10276524	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300010038\|Ga0126315_11135236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	529	Open in IMG/M
3300010039\|Ga0126309_10096594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1514	Open in IMG/M
3300010041\|Ga0126312_10957516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	625	Open in IMG/M
3300010041\|Ga0126312_11226534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	553	Open in IMG/M
3300010041\|Ga0126312_11254261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	547	Open in IMG/M
3300010042\|Ga0126314_10045864	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2816	Open in IMG/M
3300010044\|Ga0126310_11132476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	624	Open in IMG/M
3300010045\|Ga0126311_10007934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5803	Open in IMG/M
3300010045\|Ga0126311_10517705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	935	Open in IMG/M
3300010045\|Ga0126311_11504496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300010045\|Ga0126311_11874351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	509	Open in IMG/M
3300010395\|Ga0058701_10288749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	1022	Open in IMG/M
3300012900\|Ga0157292_10240210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	625	Open in IMG/M
3300012938\|Ga0162651_100025462	Not Available	838	Open in IMG/M
3300012938\|Ga0162651_100049055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	662	Open in IMG/M
3300018061\|Ga0184619_10369239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	654	Open in IMG/M
3300018072\|Ga0184635_10013134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2933	Open in IMG/M
3300018075\|Ga0184632_10271744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	737	Open in IMG/M
3300018081\|Ga0184625_10006523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	5248	Open in IMG/M
3300018081\|Ga0184625_10076540	All Organisms → cellular organisms → Bacteria	1707	Open in IMG/M
3300018082\|Ga0184639_10012345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4139	Open in IMG/M
3300018422\|Ga0190265_10320703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	1627	Open in IMG/M
3300018465\|Ga0190269_11471154	Not Available	558	Open in IMG/M
3300018466\|Ga0190268_10316652	Not Available	948	Open in IMG/M
3300018466\|Ga0190268_11184568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	632	Open in IMG/M
3300018466\|Ga0190268_11725967	Not Available	560	Open in IMG/M
3300018469\|Ga0190270_11589226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	705	Open in IMG/M
3300018469\|Ga0190270_13350852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	508	Open in IMG/M
3300018476\|Ga0190274_11852382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	698	Open in IMG/M
3300019377\|Ga0190264_11266103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter tumbae	619	Open in IMG/M
3300019767\|Ga0190267_11574314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	512	Open in IMG/M
3300021073\|Ga0210378_10368996	Not Available	534	Open in IMG/M
3300021078\|Ga0210381_10116446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	882	Open in IMG/M
3300021078\|Ga0210381_10131328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	837	Open in IMG/M
3300022694\|Ga0222623_10398264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	523	Open in IMG/M
3300022756\|Ga0222622_10048990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	2374	Open in IMG/M
3300025945\|Ga0207679_10504508	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300027636\|Ga0214469_1178112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	590	Open in IMG/M
3300027647\|Ga0214468_1161685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	560	Open in IMG/M
3300028707\|Ga0307291_1001676	All Organisms → cellular organisms → Bacteria	4997	Open in IMG/M
3300028710\|Ga0307322_10007629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2351	Open in IMG/M
3300028711\|Ga0307293_10008120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	2865	Open in IMG/M
3300028711\|Ga0307293_10188580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	656	Open in IMG/M
3300028711\|Ga0307293_10198949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	638	Open in IMG/M
3300028711\|Ga0307293_10199664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	636	Open in IMG/M
3300028716\|Ga0307311_10074243	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300028717\|Ga0307298_10107437	Not Available	795	Open in IMG/M
3300028719\|Ga0307301_10206302	Not Available	638	Open in IMG/M
3300028720\|Ga0307317_10069621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1146	Open in IMG/M
3300028720\|Ga0307317_10097796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	971	Open in IMG/M
3300028720\|Ga0307317_10244592	Not Available	606	Open in IMG/M
3300028722\|Ga0307319_10132913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	804	Open in IMG/M
3300028755\|Ga0307316_10232770	Not Available	667	Open in IMG/M
3300028771\|Ga0307320_10070060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1309	Open in IMG/M
3300028782\|Ga0307306_10049613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1042	Open in IMG/M
3300028784\|Ga0307282_10126834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1198	Open in IMG/M
3300028784\|Ga0307282_10402118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	663	Open in IMG/M
3300028787\|Ga0307323_10115769	Not Available	964	Open in IMG/M
3300028807\|Ga0307305_10036551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2254	Open in IMG/M
3300028809\|Ga0247824_11000527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	529	Open in IMG/M
3300028810\|Ga0307294_10032077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	1451	Open in IMG/M
3300028811\|Ga0307292_10528694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	507	Open in IMG/M
3300028819\|Ga0307296_10520897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	650	Open in IMG/M
3300028819\|Ga0307296_10702585	Not Available	552	Open in IMG/M
3300028875\|Ga0307289_10203427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	814	Open in IMG/M
3300028876\|Ga0307286_10013286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → Friedmanniella luteola	2575	Open in IMG/M
3300028876\|Ga0307286_10174502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	775	Open in IMG/M
3300028878\|Ga0307278_10021631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2969	Open in IMG/M
3300030619\|Ga0268386_10388307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	984	Open in IMG/M
3300030619\|Ga0268386_10895824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	556	Open in IMG/M
3300031091\|Ga0308201_10062052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	975	Open in IMG/M
3300031092\|Ga0308204_10270330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	558	Open in IMG/M
3300031228\|Ga0299914_11525350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	520	Open in IMG/M
3300031548\|Ga0307408_101911277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	569	Open in IMG/M
3300031562\|Ga0310886_10813522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	589	Open in IMG/M
3300031731\|Ga0307405_10152360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1627	Open in IMG/M
3300032004\|Ga0307414_11016030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	764	Open in IMG/M
3300032004\|Ga0307414_11149129	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300032013\|Ga0310906_10098143	Not Available	1599	Open in IMG/M
3300032126\|Ga0307415_101490059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	647	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.24%
Host-Associated	Host-Associated	17.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.96%
Plants	Host-Associated → Plants	17.76%
Aquatic	Environmental → Aquatic	10.28%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.95%
Sediment	Environmental → Aquatic → Sediment	7.48%
Freshwater	Environmental → Aquatic → Freshwater	2.80%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.87%
Phylloplane	Host-Associated → Plants → Phylloplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.02%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.48%
Loam	Environmental → Terrestrial → Soil → Loam	3.74%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.80%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	56.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.02%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.74%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.80%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.80%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	40.19%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	14.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.41%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.67%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005161	Soil and rhizosphere microbial communities from Laval, Canada - mgLPA	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010395	Agave microbial communities from Guanajuato, Mexico - Or.Ma.e	Host-Associated	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027636	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeq	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092901

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_22909352	3300000033	Soil	MGGSEIGPTGTIEERLRLGVGFAAADRRRVLGALSALAPHLSGWE
F24TB_105920973	3300000550	Soil	MSDTEDNPTGTLDERLRLGTGFAEGDRPRIVGALSALTPHLSGWEHD
F14TC_1046740181	3300000559	Soil	MTENSPTSTLDERLRLGAGFAAADRMHILEALSALAPHL
F14TB_1010873903	3300001431	Soil	MSDTEDNPTGTLDERLRLGTGFAEGDRPRIVGALSALTPHLSGWE
C688J35102_1207001923	3300002568	Soil	MSGTEGSPTGTLEERLRLGAGFAAADRPRILGVLSALAPHLSGW
Ga0063356_1018444593	3300004463	Arabidopsis Thaliana Rhizosphere	MSGTENNQTGTLDEHLRLGAGFAAADRPRILRALSALAPHLSGWEHD
Ga0062595_1001591884	3300004479	Soil	MGGSGIGPTGTLEERLRLGVGFAAADRRRILGALSALAPHLSGWEHDQVDLEVSL
Ga0062595_1012502621	3300004479	Soil	MRGTENDPTGTLDERLRLGAGFAEVDRPRILGALSALTPHLSGWEHDQVDLEVSL
Ga0066807_10167711	3300005161	Soil	MSGTENIPTATLEARLRLGAGFAAADRPRILEALSALAPHLSGW
Ga0068862_1026516122	3300005844	Switchgrass Rhizosphere	MSGTENSPTGTLDERLRLGAGFAAADRMRILEALSALAPHLSGWEHDQV
Ga0075432_104450362	3300006058	Populus Rhizosphere	MSGTENSPTRTLDERLRVGAGFAEADRPRILEALSALTPHLSGWEHD
Ga0074057_119884493	3300006605	Soil	MSGTENNPAGTLDERLRLGAGFAAADRMHILEALSAL
Ga0075428_1001236585	3300006844	Populus Rhizosphere	MSGTENSPTRTLDERLRLGAGFAEADRPRILEALSALT
Ga0075421_1000891041	3300006845	Populus Rhizosphere	MSGTENSPTRTLDERLRLGAGFAEADRPRILEALS
Ga0075431_1002037305	3300006847	Populus Rhizosphere	MSGTENSPTRTLDERLRLGAGFAEADRPRILEALSAL
Ga0075434_1000240409	3300006871	Populus Rhizosphere	MSGTENSPTRTLDERLRLGAGFAEADRPRILEALSALTPHL
Ga0075434_1000439231	3300006871	Populus Rhizosphere	MSGTENSPTRTLDERLRLGAGFAEADRPRILEALSALTPHLSGWEHDQVDLEV
Ga0079215_110116191	3300006894	Agricultural Soil	MSGTENNPPGTLDEHLRLGAGFAAADRPRILRALFAIAPHLSGW
Ga0079218_103425772	3300007004	Agricultural Soil	MSGTENNQTGTLDERLRLGAGFAAADRPRILRALSALAPHLSGWEHDQVD
Ga0111539_100375497	3300009094	Populus Rhizosphere	MSGTENSPTRTLDERLRLGAGFAEADRPRILEALSALTPHLSGW
Ga0075418_116273691	3300009100	Populus Rhizosphere	MSGTQNNPTATLDEHLRLGAGFAAADRPRILEALSALTPHLSGWEHDQVDLEVS
Ga0114129_114623021	3300009147	Populus Rhizosphere	VSGTENNQTGTLDEHLRLGAGFAAADRPRILRALSALTPHLSGWEHDRVDLEVSLKLVERDGWS
Ga0105249_111394592	3300009553	Switchgrass Rhizosphere	MATTENSPTGTLDEHLRLGAGFAEADRPRILEALSALTPHLSGWEHDQ
Ga0126307_104211344	3300009789	Serpentine Soil	MSGTENSPTSTLEENLRLGAGFAAADRPRILEALSALSPHLSGWEH
Ga0126307_104352051	3300009789	Serpentine Soil	MSGTENSPTSRLEENLRLGAGFAAADRPRILEALSAL
Ga0126307_116873342	3300009789	Serpentine Soil	MSGTENSHTGTLDEHLRLGAGFAAADRPRILGGLSALAPHLSGWE
Ga0126313_102765242	3300009840	Serpentine Soil	MGGTENNQTGTLDERLRLGAGFAAADRPRILEALSALSPHLSGWEH
Ga0126315_111352362	3300010038	Serpentine Soil	MGGTENNQTGTLDERLRLGAGFAAADRPRILRALSALSPHLSVVGPCCGEG
Ga0126309_100965944	3300010039	Serpentine Soil	MSGTENNQTGTLDEHLRLGAGCAAADRPRTSGLCPHWRRSCLDGNHDQVDLEVSL
Ga0126312_109575161	3300010041	Serpentine Soil	MSGTENSPTGNLDERLRLGAGFAAADRPRILGGLSALAPHLSGWEHDQVELEVS
Ga0126312_112265342	3300010041	Serpentine Soil	MSRTENNQTGTLYEHHLRLGAGFAAADRPRTLRALSALAPHLSGWE
Ga0126312_112542612	3300010041	Serpentine Soil	MSGTENSPTGNLEERLRLGAGFAAADRPRILGGLSALAPHLSGWEHDQVELEVS
Ga0126314_100458645	3300010042	Serpentine Soil	MSGTENNPTGTLDERLRLGAGFAAADRPRVVEALSALTPHLSGWEHDQVDLEVSLKDT
Ga0126310_111324762	3300010044	Serpentine Soil	MSGTENSPTGNLEERLRLGAGFAAADRPRILGGLSALAPHLSGWE
Ga0126311_1000793412	3300010045	Serpentine Soil	MSGTENNHNGTLDERLRLGAGFAAADRPRILRALSALAPHLSGWEHDQV
Ga0126311_105177051	3300010045	Serpentine Soil	MGGTENNQTGTLDERLRLGAGFAAADRPRILRALSALSPHLSVVGPC
Ga0126311_115044961	3300010045	Serpentine Soil	MGAAMSGTENNPAGTLDERLRLGAGFAEADRSRIVGALSALTPHLSGWEHDQ
Ga0126311_118743511	3300010045	Serpentine Soil	MSGTENSPTSTLEENLRLDAGFAAADRPRILEALSALSPHLSGWEHNQVDLEVSLKDTE
Ga0058701_102887491	3300010395	Agave	MSGTENSPTGILEEHLRLGAGFAAADRARILGALSAVAPHLSGWEHDQ
Ga0157292_102402102	3300012900	Soil	MSGTENDPTETLDERLRLGAGFAAADRPRILGALAGLEPHLSGWEHDQVDLEVSLKDAEGPDQK
Ga0162651_1000254621	3300012938	Soil	MSGTENNPTGTLDERLRLGAGFAEADRPRIVGALSALTPHLS
Ga0162651_1000490551	3300012938	Soil	MSGTENNPTGTLDERLRLGAGFAPADRPRIRGALY
Ga0184619_103692392	3300018061	Groundwater Sediment	MTGTENGPTGVLEEHLRLGAGFAAADRPRILGALSALAP
Ga0184635_100131341	3300018072	Groundwater Sediment	MSGTESSPTSTLEERLRLGAGFAAADRPRILGALSALAPH
Ga0184632_102717442	3300018075	Groundwater Sediment	MSETENGPAGTLEGRLRIGAGFAAADRRRILGALSGLA
Ga0184625_100065235	3300018081	Groundwater Sediment	MSGTESSPTSTLEERLRFGAGFAAADRLRILGALSALAPHLSG
Ga0184625_100765401	3300018081	Groundwater Sediment	MSGTENSPTATLDEHLRLGAGFAAADRPRILEALSALAPH
Ga0184639_100123454	3300018082	Groundwater Sediment	MSGTENSPTATLDEHLRFGAGFAAADRPRILEALSALAPHLSG
Ga0190265_103207033	3300018422	Soil	MSGTESSPTGTLEGRLRLGAGFAAADRPRILGVLSALAPHLSGW
Ga0190269_114711542	3300018465	Soil	MSGTENSPTGTLDERLRLGAGFAAADRMRLLEALSALA
Ga0190268_103166522	3300018466	Soil	MSGTENNQAGTLYEHLRLGAGFAAADRPRTLRALSALTPHLSGWEHDQVDLEVSLKDTEGPDQKV
Ga0190268_111845681	3300018466	Soil	MSGTEGSPTGTLEERLRLGAGFAAADRPRILGVLSALAPH
Ga0190268_117259671	3300018466	Soil	MTGTENSPTRTLEEHLRFGAGFAAADRPRILEALS
Ga0190270_115892262	3300018469	Soil	MSGPENGPKGILEGRLRIGPGFAAADRRRILEALSALAPHLSG
Ga0190270_133508521	3300018469	Soil	VSGTENSPTGTLDERLRLGAGFAAADRPRILEALSALAPHLSGWEHDQV
Ga0190274_118523821	3300018476	Soil	MTGTESSPMGTLDERLRLGAGFTAADRPRILGVLSALAPH
Ga0190264_112661031	3300019377	Soil	MSGTEIGPTGTLEQRLRLGVGFAAADRLRVLRALSALAPH
Ga0190267_115743141	3300019767	Soil	MSETASSPTGTLEERLRLGAGFAAADRPRILGVLSALAQHLSGWEHDQVDLEVSLKD
Ga0210378_103689961	3300021073	Groundwater Sediment	MSGTEDNPTATLEEHLRLGAGFASADRPRILEALS
Ga0210381_101164461	3300021078	Groundwater Sediment	MSGTEYSSPGTPVERLRLGAGFAAADRPRILAALSALAPHLSGWEHDQ
Ga0210381_101313281	3300021078	Groundwater Sediment	MSGTEYSPISTLEEHLRLGAGFAAADRPRILEALSALAPHLSGWEHDQV
Ga0222623_103982642	3300022694	Groundwater Sediment	MSGTEDNATATLDEHLRLGAGFAAADRPRILETLSALAPHLSG
Ga0222622_100489906	3300022756	Groundwater Sediment	MSGTENSPTATLDEHLRLGAGFAAADRPRILEAVSA
Ga0207679_105045081	3300025945	Corn Rhizosphere	MTGTENSPPGTLEEHLRLGAGFAAADRPHILQALSA
Ga0214469_11781121	3300027636	Soil	MSETENGPTGTLERRLRIGAGFAAADRRRILGALSALAP
Ga0214468_11616851	3300027647	Soil	MGGSEIGPTGTLEERLRLGVGFAAADRLRILEALSALAPH
Ga0307291_10016765	3300028707	Soil	MSGTENNPTGTLDERLRLGAGFAPADRPRIRGALCALAPHLSGWDTTRSTS
Ga0307322_100076291	3300028710	Soil	MSGTENNQAGTLDERLRLGAGFAAADRPRILRALSALAPHLSGWEH
Ga0307293_100081201	3300028711	Soil	MSGTENSPTATLDEHLRLGAGFAAADRPRILEALSA
Ga0307293_101885801	3300028711	Soil	MSGTENNPTGTLDERLRLGAGFAAADRKRILEALS
Ga0307293_101989492	3300028711	Soil	MSGTENNQAGTLDERLRLGAGFAAADRPRILRALSALAPHLSGWEHDQ
Ga0307293_101996641	3300028711	Soil	MSGTENSPTRTLDERLRLGAGFAEADRPRILGALSALAPHLSGWEHD
Ga0307311_100742432	3300028716	Soil	MSGTENSPTATLDEHLRLGAGFAAADRPRILEALS
Ga0307298_101074371	3300028717	Soil	MSGTEYSPISTLEEHLRLGAGFAAADRPRILEALSAL
Ga0307301_102063021	3300028719	Soil	MNGTENSPTATLEEHLRLGAGFAEADRPHILEALSALAPHLSG
Ga0307317_100696211	3300028720	Soil	MSGTEYSPTATLEEHLRLGADFAAADRPHILEALSALAPHLSG
Ga0307317_100977961	3300028720	Soil	MSGTENSPTRTLDERLRLGAGFAAADRPHIIFALSALAPHLSGWGHDQV
Ga0307317_102445921	3300028720	Soil	MSGTENNPTSTLEERLRLGAGFAEADRPRILEALSA
Ga0307319_101329131	3300028722	Soil	MSGTENSPTRTLEERLRLGTGFAANDRPRILEALSALAPHLSGWEHDQ
Ga0307316_102327701	3300028755	Soil	MSGTENSPTATLDEHLRLGAGFAAADRPRILEALSALAPHLSGWG
Ga0307320_100700602	3300028771	Soil	MSGTENNPTATLDERLRLGAGFAEADRPRIVGALSALTPHLSGWEHDQVDLEVSLK
Ga0307306_100496131	3300028782	Soil	MNGTEHSPTATLEEHLRLGAGFAEADRPRILEALSALAPHLSG
Ga0307282_101268341	3300028784	Soil	MSGAENSPTGTLDERLRLGAGFAAADRKRILEALS
Ga0307282_104021182	3300028784	Soil	MSGTEYSPTATLEEHLRLGAGFAAADRPHILEALSALAPHLSGWEHD
Ga0307323_101157692	3300028787	Soil	MSGTENSPTRTLDERLRLGAGFAAADRPHIIFAQS
Ga0307305_100365513	3300028807	Soil	MSGTENNPTGTLDERLRLGAGFAAADRKRILEALSALAPHLSGWEH
Ga0247824_110005272	3300028809	Soil	MSGTENGPAGTLEDRLRIGAGFAAADRRRILGALSGLAPHLSGWEHDQVDLEVSLKDTEG
Ga0307294_100320772	3300028810	Soil	GALMSGTESSPTSTLEERLRFGAGFAAADRLRILGALSALAPHLSG
Ga0307292_105286942	3300028811	Soil	GTEDNATATLDEHLRLGAGFAAADRPRILETLSALAPHLSG
Ga0307296_105208971	3300028819	Soil	MSGTENNPTGTLDERLRLGAGFAAADRKRILEALSALAP
Ga0307296_107025852	3300028819	Soil	MSGTENSPTATLEARLRLGAGFAAADRILGALSALAPHLS
Ga0307289_102034272	3300028875	Soil	MNGTENSPTATLEEHLRLGAGFASADRPRILEALSALAPHLSGWE
Ga0307286_100132866	3300028876	Soil	MSGTENSPTATLDEHLRLGAGFAAADRPRILEALSALAPHLSG
Ga0307286_101745022	3300028876	Soil	MSGTENSPPGTPVARLRLGAGFAAADRPRILAALSALAPHLSGWEHDQ
Ga0307278_100216311	3300028878	Soil	MSGTENAPTGTLEERLRLGAGFAAADRPRILGAMSALAPHLSGWEHDQVDLEV
Ga0268386_103883071	3300030619	Soil	MSGTENNPTGSLEGRLRLGAGFAAADRLRILGALSALAPHLSGWEHDQVDLEVSL
Ga0268386_108958242	3300030619	Soil	MGGPENGPAGSLEGRLRLGAGFAAADRMRILGALAALAPHLSGWEHDRVDLEVSLKDTGG
Ga0308201_100620521	3300031091	Soil	MSVTENSPTRTLVARLRLGAGFAEADRPRILGALSALAPHLSGWEHDQVDLE
Ga0308204_102703302	3300031092	Soil	MSGTENNQTGTLDKRLRLGAGVAEADRPRIFRALSTLAPHLSGIR
Ga0299914_115253501	3300031228	Soil	MGGPENSPTGSLEGRLRIGAGFAAADRRRILGALAALAPHLSGWEH
Ga0307408_1019112771	3300031548	Rhizosphere	MGGTENNQTGTLDERLRLGAGFAAADRPRILRALSALSPHLSG
Ga0310886_108135221	3300031562	Soil	MSGTENSPTRTLDERLRLGAGFAEADRPRILEALSALTPHLSGWEHDQVDLE
Ga0307405_101523601	3300031731	Rhizosphere	MSGTENSPTSTLEENLRLGAGFAAADRPRILEALSALSPHLSGWE
Ga0307414_110160301	3300032004	Rhizosphere	MSGTENNQTGTLDERLRLGAGFAAADRPRILRALSAL
Ga0307414_111491292	3300032004	Rhizosphere	MSGTENSPTGILEEHLRLGAGFAAADRARILGALSALAPHLSG
Ga0310906_100981431	3300032013	Soil	MSGTENSPTRTLDERLRLGAGFAEADRPRILEALSALTPHLSGWEHDQVDLEVS
Ga0307415_1014900592	3300032126	Rhizosphere	MSGTENSPTGNLDERLRLGAGFAAADRPRILGGLSALAPHLSGWEHDQVEL

Hidden Markov Model


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