Metagenome / Metatranscriptome Family F092857

Basic Information
Family ID	F092857
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	47 residues
Representative Sequence	MLADKYLRDELNKFAKYVIQQSRSNLTKSKKNASKELYNSLGY
Number of Associated Samples	96
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.96 %
% of genes near scaffold ends (potentially truncated)	95.33 %
% of genes from short scaffolds (< 2000 bps)	93.46 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (75.701 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (15.888 % of family members)
Environment Ontology (ENVO)	Unclassified (67.290 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (71.028 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1ASHM485C_05673870 2DelMOSum2010_102116372 3DelMOSum2011_100111976 4NpDRAFT_104747321 5JGI24006J15134_101644232 6JGI24006J15134_101860711 7JGI24004J15324_101485522 8JGI26079J46598_11053392 9JGI26080J50196_10973061 10JGI26082J51739_100694403 11Ga0065861_10006382 12Ga0066224_10070491 13Ga0070727_101404753 14Ga0078747_1618451 15Ga0070725_101933671 16Ga0075466_11444261 17Ga0075466_11962431 18Ga0070749_101259914 19Ga0070746_100072811 20Ga0098060_10260231 21Ga0070747_11351023 22Ga0070747_11775471 23Ga0070753_13389232 24Ga0099849_10825303 25Ga0102819_10652242 26Ga0102821_10120705 27Ga0102908_10400943 28Ga0102899_11560022 29Ga0114910_10662651 30Ga0102813_12945462 31Ga0102885_11051282 32Ga0115559_12279593 33Ga0115007_106129453 34Ga0115571_11142561 35Ga0115103_11600421 36Ga0136655_12621761 37Ga0129324_103084022 38Ga0118731_1121824342 39Ga0118731_1143356133 40Ga0118733_1012543671 41Ga0118733_1032477533 42Ga0151657_10693722 43Ga0181387_10253141 44Ga0181391_11194922 45Ga0181373_10157131 46Ga0181428_11579661 47Ga0181421_10214611 48Ga0181400_11316963 49Ga0181407_11684071 50Ga0181410_10561163 51Ga0181406_12139452 52Ga0181430_11150533 53Ga0181386_10729231 54Ga0181606_104816981 55Ga0206128_13317382 56Ga0211690_11288052 57Ga0211708_103272301 58Ga0213861_103898702 59Ga0222718_103534911 60Ga0212030_10277303 61Ga0224906_11295401 62Ga0196897_10045194 63Ga0212020_10758792 64Ga0224502_103500232 65Ga0233404_100095641 66Ga0233412_104926611 67Ga0255039_101492831 68Ga0228673_10547981 69Ga0255042_100084431 70Ga0255042_101588261 71Ga0255046_106568402 72Ga0255047_104189013 73Ga0255044_102864002 74Ga0255044_104980281 75Ga0208669_10782583 76Ga0208013_11659192 77Ga0209535_11375751 78Ga0209535_12218552 79Ga0209336_101924771 80Ga0209756_11979101 81Ga0209337_12546172 82Ga0208148_11331191 83Ga0208660_10447971 84Ga0208134_10447291 85Ga0209199_11505261 86Ga0209199_11631491 87Ga0209533_11270323 88Ga0208165_10276751 89Ga0209037_11771692 90Ga0233415_101158353 91Ga0209713_110420612 92Ga0209536_1022017861 93Ga0209272_102062362 94Ga0209165_100601903 95Ga0233413_103256511 96Ga0233413_104552822 97Ga0256368_10350231 98Ga0228619_11060841 99Ga0257114_11854043 100Ga0135224_10257111 101Ga0307488_101195024 102Ga0307488_107841102 103Ga0302114_102212971 104Ga0307985_100675951 105Ga0307377_109011551 106Ga0316196_100900191 107Ga0335010_0327111_1_126
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1ASHM485C_05673870 2DelMOSum2010_102116372 3NpDRAFT_104747321 4JGI24006J15134_101644232 5JGI24006J15134_101860711 6JGI24004J15324_101485522 7JGI26082J51739_100694403 8Ga0066224_10070491 9Ga0078747_1618451 10Ga0075466_11444261 11Ga0070746_100072811 12Ga0115559_12279593 13Ga0151657_10693722 14Ga0181428_11579661 15Ga0181400_11316963 16Ga0181406_12139452 17Ga0209535_12218552 18Ga0209713_110420612 19Ga0209536_1022017861 20Ga0335010_0327111_1_126
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42. 1Ga0181373_10157131 2Ga0070747_11775471 3Ga0099849_10825303 4Ga0114910_10662651 5Ga0118733_1012543671 6Ga0151657_10693722 7Ga0181428_11579661 8Ga0181400_11316963 9Ga0181406_12139452 10Ga0181430_11150533 11Ga0206128_13317382 12Ga0213861_103898702 13Ga0208669_10782583 14Ga0209535_11375751 15Ga0209535_12218552 16Ga0233415_101158353 17Ga0209713_110420612 18Ga0256368_10350231 19Ga0335010_0327111_1_126
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.70% β-sheet: 0.00% Coil/Unstructured: 49.30%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04466	Terminase_3	5.61
PF00303	Thymidylat_synt	0.93
PF00041	fn3	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1783	Phage terminase large subunit	Mobilome: prophages, transposons [X]	5.61
COG0207	Thymidylate synthase	Nucleotide transport and metabolism [F]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	24.30 %
Unclassified	root	N/A	75.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	0.93 %
Unclassified	root	N/A	75.70 %
Viruses	superkingdom	All Organisms → Viruses	23.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.69 %
Unclassified	root	N/A	75.70 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.69 %
Unclassified	root	N/A	75.70 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.69 %
Unclassified	root	N/A	75.70 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.93 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.69 %
Unclassified	root	N/A	75.70 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.93 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.69 %
Unclassified	root	N/A	75.70 %

Name	Rank	Taxonomy	Distribution
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.69 %
Unclassified	root	N/A	75.70 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.93 %

Name	Rank	Taxonomy	Distribution
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.69 %
Unclassified	root	N/A	75.70 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.93 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.69 %
Unclassified	root	N/A	75.70 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.93 %
Winogradskyella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella	0.93 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.69 %
Unclassified	root	N/A	75.70 %
unclassified Winogradskyella	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella	0.93 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.93 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.69 %
Unclassified	root	N/A	75.70 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.93 %
Winogradskyella sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	0.93 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300022913\|Ga0233404_10009564	All Organisms → Viruses → Predicted Viral	2225	Open in IMG/M
(restricted) 3300024062\|Ga0255039_10149283	All Organisms → Viruses	958	Open in IMG/M
(restricted) 3300024340\|Ga0255042_10008443	All Organisms → Viruses → Predicted Viral	1953	Open in IMG/M
(restricted) 3300024340\|Ga0255042_10158826	Not Available	680	Open in IMG/M
(restricted) 3300024519\|Ga0255046_10656840	Not Available	506	Open in IMG/M
(restricted) 3300024520\|Ga0255047_10418901	Not Available	674	Open in IMG/M
(restricted) 3300024529\|Ga0255044_10286400	Not Available	670	Open in IMG/M
(restricted) 3300024529\|Ga0255044_10498028	Not Available	516	Open in IMG/M
(restricted) 3300027861\|Ga0233415_10115835	All Organisms → Viruses → Predicted Viral	1192	Open in IMG/M
(restricted) 3300027996\|Ga0233413_10325651	Not Available	663	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.07%
Terrestrial	Environmental → Terrestrial	0.93%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Marine	Environmental → Aquatic → Marine	98.13%
Soil	Environmental → Terrestrial → Soil	0.93%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	0.93%
Coastal	Environmental → Aquatic → Marine → Coastal	32.71%
Harbor	Environmental → Aquatic → Marine → Harbor	0.93%
Inlet	Environmental → Aquatic → Marine → Inlet	6.54%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.21%
Lake	Environmental → Aquatic → Freshwater → Lake	0.93%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	4.67%
Oceanic	Environmental → Aquatic → Marine → Oceanic	15.89%
Pelagic	Environmental → Aquatic → Marine → Pelagic	4.67%
Sediment	Environmental → Aquatic → Marine → Sediment	0.93%
Strait	Environmental → Aquatic → Marine → Strait	15.89%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.67%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	6.54%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.93%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	9.35%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.93%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	23.36%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	15.89%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	14.95%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Harbor → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	13.08%
Coastal Water And Sediment	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment	0.93%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	0.93%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	6.54%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.93%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.93%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.93%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.87%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	14.02%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	3.74%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.80%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	1.87%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.87%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.87%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.93%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.93%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.93%
Marine Harbor	Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor	0.93%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	6.54%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.93%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	3.74%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.93%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.87%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.93%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	0.93%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	15.89%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	5.61%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	2.80%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.93%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	0.93%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.93%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918005	Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from high methane PC12-225-485cm	Environmental	Open in IMG/M
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000929	Marine plume microbial communities from the Columbia River - 15 PSU	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300003216	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA	Environmental	Open in IMG/M
3300003345	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA	Environmental	Open in IMG/M
3300003617	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ASHM485C_05673870	2140918005	Coastal Water And Sediment	MLNKEVQNELNKFAKYVIQQSRSNLTKSDKNVSKDLYNSLGYKLEE
DelMOSum2010_102116372	3300000101	Marine	MLADKSIQEELNKFAKYVIQQSRSNLSKSDKNDTKGLYNSLGYNIEL
DelMOSum2011_100111976	3300000115	Marine	MLADKALQEELNKFAKYVIQQSRSNLSKSGKNVSKELYNSLGYNVG*
NpDRAFT_104747321	3300000929	Freshwater And Marine	MLADQYLRDELNKFAKYVIQQSRSNLSKSKKNASKELYNSLGY
JGI24006J15134_101644232	3300001450	Marine	MLADKFLRDELNKFAKYVVQQARTNLSKGASPYGTFNDTKNLYNSLGFTDPSTKAGRTSV
JGI24006J15134_101860711	3300001450	Marine	MLADKFLRDELNKFAKYVVQQARTNLTKGASPYGTF
JGI24004J15324_101485522	3300001472	Marine	MLADEYLRDELNKFAKYVIQQSRSNLTKKKKSSSKE
JGI26079J46598_11053392	3300003216	Marine	MLADKALQEELNKFAKYVIQQSRSNLSKSDKNDTKALYNSLGYDIELT
JGI26080J50196_10973061	3300003345	Marine	MLADKALQEELNKFAKYVIQQSRSNLSKSDKNDTKALYNSLGYDIEL
JGI26082J51739_100694403	3300003617	Marine	MLADKYLQDELNKFAKYVIQQSRSNLTKGSSDYGTYNDTKTLYNSLKGNVVPTKN
Ga0065861_10006382	3300004448	Marine	MLADKFLRDELNKFAKYVIQQSRSNLTKGKKNSSKELYNSLGYDISEAS
Ga0066224_10070491	3300004457	Marine	MLADKYLQDELNKFAKYVIQQSRSNLSKSNRNDTKALYNSLGYDIQLTTKGAELGF
Ga0070727_101404753	3300005590	Marine Sediment	MLNKEVQNELNKFAKYVIQQSRSNLTKGDKNVSKDLYNSLGYKLEETSKGT
Ga0078747_1618451	3300005820	Marine Sediment	MLNKEAQDSLNGFAKYVIQQSRSNLTKGGKKASGALYNSLGYNVEQTAKGFILSFEMEDY
Ga0070725_101933671	3300005920	Marine Sediment	MLADKALQEELNKFAKYVIQQSRSNLTKGDSDYGTYNDTKGLYNSLKGNVTPTKNGA
Ga0075466_11444261	3300006029	Aqueous	MLADKFLRDELNKFAKYVIQQSRSNLTKGALPYGTFNDTKNLYN
Ga0075466_11962431	3300006029	Aqueous	MLADQYLRDELNKFAKYVIQQSRSNLSKSKKNASKELYNSLGYDI
Ga0070749_101259914	3300006802	Aqueous	MLADKYLRDELNKFAKYVIQQSRSNLTKGKKNASKELYNSLGYE
Ga0070746_100072811	3300006919	Aqueous	MLADKYLRDELNKFAKYVIQQSRSNLTKGKKNASKELYNSLGYDISQKGDTTSI
Ga0098060_10260231	3300006921	Marine	MLAEQFLRDELNKFAKYVVQQARSNLSKGASPFGTFNDTKNLYNSLGFTDPSTK
Ga0070747_11351023	3300007276	Aqueous	MLADKFLRDELNKFAKYVIQQSRSNLTKGALPYGTFNDTKNLYNSLDSDVDTKGD
Ga0070747_11775471	3300007276	Aqueous	MLADKALQEELNKFAKYVIQQSRSNLSKSGKNVSKELYNSLGYNVEVTTKGAELG
Ga0070753_13389232	3300007346	Aqueous	MLADKYLRDELNKFAKYVIQQSRSNLTKGKKNASK
Ga0099849_10825303	3300007539	Aqueous	MLADKYLRDELNKFAKYVIQQSRSNLTKGASPYGTFNDTKNLYNSLGYTDPTTKN
Ga0102819_10652242	3300007553	Estuarine	MLADKYLRDELNKFAKYVIQQSRSNLTKSKKNASKELYNSLGYDITQKG
Ga0102821_10120705	3300007557	Estuarine	MLADKYLRDELNKFAKYVIQQSRSNLTKGASPYGTFNDTKNL
Ga0102908_10400943	3300007665	Estuarine	MLADKALQEELNKFAKYVIQQSRSNLSKSDKNDTKALYNSLG
Ga0102899_11560022	3300007706	Estuarine	MLADKSIQEELNKFAKYVIQQSRSNLYKSDKNDTKALYNSLGY
Ga0114910_10662651	3300008220	Deep Ocean	MLGDKFLRDELNKFAKYVIQQSRSNLTKGKKNVSKELY
Ga0102813_12945462	3300009003	Estuarine	MLADKYLRDELNKFAKYVIQQSRSNLTKGASPYGTFNDSKNLYNSLGSDVDTKGD
Ga0102885_11051282	3300009142	Estuarine	MLADKSIQEELNKFAKYVIQQSRSNLSKSDKNDTKALYNSLGYN
Ga0115559_12279593	3300009438	Pelagic Marine	MLADKYLQDELNKFAKYVIQQSRSNLSKSNRNDTK
Ga0115007_106129453	3300009441	Marine	MLADQFLRDELNKFAKYVIQQSRSNLTKGSQPYGSYNDTKTLYN
Ga0115571_11142561	3300009495	Pelagic Marine	MLADKSIQEELNKFAKYVIQQSRSNLSKSDKNDTKKLYNSLGYNIELTQKGA
Ga0115103_11600421	3300009599	Marine	MLADKALQEELNKFAKYVIQQSRSNLSKSDKNDTKALYNSLGYDIELTTKGA
Ga0136655_12621761	3300010316	Freshwater To Marine Saline Gradient	MLADKYLQDELNKFAKYVIQQSRSNLSKSDRNDTKALYNSL
Ga0129324_103084022	3300010368	Freshwater To Marine Saline Gradient	MLADKYLQDELNKFAKYVIQQSRSNLSKSDRNDTKALYNSLGYDIELTAKGAELGF
Ga0118731_1121824342	3300010392	Marine	MLAEQFLRDELNKFAKYVVQQARTNLTKGDSPFGTFNDTKNLYNSLGFTNPS
Ga0118731_1143356133	3300010392	Marine	MLADKFLRDELNKFAKYVIQQSRSNLTKGSQPYGSYNDTKTLYN
Ga0118733_1012543671	3300010430	Marine Sediment	MLNKEAQDSLNAFAKYVIQQSRSKLTKGGKKASGALYNSLGYNVEQTAK
Ga0118733_1032477533	3300010430	Marine Sediment	MLAEQYLRDELNKFAKYVIQQARTNLTKGASPYGTFN
Ga0151657_10693722	3300011247	Marine	MLADKFLQEELNKFAKYDIQKSRNKLSKTEKNDNKTLQNSLVYDIELTTK*
Ga0181387_10253141	3300017709	Seawater	MLADQYLRDELNKFAKYVIQQSRSNLSKSKKNASKELYNSLGYDISESA
Ga0181391_11194922	3300017713	Seawater	MLADQFLKDELNKFAKYVIQQSRSNLTKGKKNASKELYNSLGYQVSQSA
Ga0181373_10157131	3300017721	Marine	MLADKYLRDELNKFAKYVIQQSRSNLTKSKKNASKELYNSLGY
Ga0181428_11579661	3300017738	Seawater	MLGDKFLRDELNKFAKYVIQQSRSNLTKGKSPYGSFNDTKKLYNSMDFNVGQKGSTMSLA
Ga0181421_10214611	3300017741	Seawater	MLADQYLRDELNKFAKYVIQQARTNLTKGASPYGTFNDTKNLYNSLD
Ga0181400_11316963	3300017752	Seawater	MLAEKFLREELNKFAKYVIQQSRSNLTKGKKNTSKELYN
Ga0181407_11684071	3300017753	Seawater	MLGDKYLRDELNKFAKYVIQQSRSNLTKSKKNASKELYNSLGYDITQKGSTTS
Ga0181410_10561163	3300017763	Seawater	MLADEYLRDELNKFAKYVIQQSRSNLSKGKKNASKELYNSLGYQVSKSAETTSL
Ga0181406_12139452	3300017767	Seawater	MLDRFVRDELNKFAKYVIQQARTNLTKRRKNVSRELYD
Ga0181430_11150533	3300017772	Seawater	MLADKALKEELNKFAKYVIQQSRSNLSKSDKNDTKALYNSLGYDIEL
Ga0181386_10729231	3300017773	Seawater	MLADEYLRDELNKFAKYVIQQSRSNLSKGKKNASKELYNS
Ga0181606_104816981	3300018048	Salt Marsh	MLADKYLRDELNKFAKYVIQQSRSNLTKGKKNASKELYNS
Ga0206128_13317382	3300020166	Seawater	MLADKALQEELNKFAKYVIQQSRSNLTKGSPDYGTYNDTKGLYNSLKGNVSVNKKGANL
Ga0211690_11288052	3300020335	Marine	MLADQYLRDELNKFAKYVIQQSRSNLTKSKKNLSKEL
Ga0211708_103272301	3300020436	Marine	MLADKFLRDELNKFAKYVIQQSRSNLSKGKKNASKE
Ga0213861_103898702	3300021378	Seawater	MLADKYLQDELNKFAKYVIQQSRSNLSKSDRNDTKGLYNSLGYDIELTTK
Ga0222718_103534911	3300021958	Estuarine Water	MLADKYLQDELNKFAKYVIQQSRSNLSKSDKNDTKALYNSLGYDIELT
Ga0212030_10277303	3300022053	Aqueous	MLADKSIQEELNKFAKYVIQQSRSNLSKSDKNDTKQLY
Ga0224906_11295401	3300022074	Seawater	MLGDKFLRDELNKFAKYVIQQSRSNLTKGKSPYGSFNDTKKLYNSM
Ga0196897_10045194	3300022158	Aqueous	MLADKYLRDELNKFAKYVIQQSRSNLTKGKKNASKELYN
Ga0212020_10758792	3300022167	Aqueous	MLADKYLRDELNKFAKYVIQQSRSNLTKGKKNASKELYNSLGYDI
Ga0224502_103500232	3300022218	Sediment	MLADKYLRDELNKFAKYVIQQSRSNLTKGKKNASKELY
(restricted) Ga0233404_100095641	3300022913	Seawater	MLADKYLRDELNKFAKYVIQQSRSNLTKSKKNASKELYNSLGYDITQK
(restricted) Ga0233412_104926611	3300023210	Seawater	MLNKQAQDSLNGFAKYVIQQSRSNLTKGGKKASGDLYNSLGYNVEQTAKGFSLSF
(restricted) Ga0255039_101492831	3300024062	Seawater	MLADKSIQEELNKFAKYVIQQSRSNLSKSDKNDTKEL
Ga0228673_10547981	3300024242	Seawater	MLADKALKEELNKFAKYVIQQSRSNLSKSDKNDTKALYNSLGYDIELTTKG
(restricted) Ga0255042_100084431	3300024340	Seawater	MLADKALQEELNKFAKYVIQQSRSNLSKSDKNDTKGLYNSLGYNVELTAKGAEL
(restricted) Ga0255042_101588261	3300024340	Seawater	MLADKALQDELNKFAKYVIQQSRSNLTKGSSDYGTYNDTKTLYNSLKGNVVSTKN
(restricted) Ga0255046_106568402	3300024519	Seawater	MLADKALQEELNKFAKYVIQQSRSNLSKSDKNDTKGLYNSLGYNV
(restricted) Ga0255047_104189013	3300024520	Seawater	MLADKYLQDELNKFAKYVIQQSRSNLTKGSSDYGT
(restricted) Ga0255044_102864002	3300024529	Seawater	MLADKALQEELNKFAKYVIQQSRSNLTKGSSDYGTYNDTKGL
(restricted) Ga0255044_104980281	3300024529	Seawater	MLADKYLRDELNKFAKYVIQQSRSNLTKGKKNASKELYNSLGYDITQKGSTTSM
Ga0208669_10782583	3300025099	Marine	MLAEQFLRDELNKFAKYVVQQARTNLTKGASPYGTFNDTKNLYNSLGFTNPSTKGG
Ga0208013_11659192	3300025103	Marine	MLAEQFLRDELNKFAKYVVQQARSNLSKGASPFGTFNDTKNLYNSLGFTDPSTKGGR
Ga0209535_11375751	3300025120	Marine	MLAEQFLRDELNKFAKYVIQQSRSNLTKKKKSSSKELYNSLGYQVSQS
Ga0209535_12218552	3300025120	Marine	MLADQFLRDELNKFAKYVIQQSRSNLTKGSQPYGSYNDTKSLYNSLKGNVTN
Ga0209336_101924771	3300025137	Marine	MLADEYLRDELNKFAKYVIQQSRSNLSKGKKNASKELY
Ga0209756_11979101	3300025141	Marine	MLADKYLRDELNKFAKYVIQQSRSNLTKGKKNASKELYNSLGYDIS
Ga0209337_12546172	3300025168	Marine	MLADKFLRDELNKFAKYVVQQARTNLTKGASPYGTFNDTKNLYNSLGFTDPSTKA
Ga0208148_11331191	3300025508	Aqueous	MLADKFLRDELNKFAKYVIQQSRSNLTKGALPYGTFNDTKNLYNS
Ga0208660_10447971	3300025570	Aqueous	MLADQYLRDELNKFAKYVIQQSRSNLSKSKKNASKELYNS
Ga0208134_10447291	3300025652	Aqueous	MLADKFLRDELNKFAKYVIQQSRSNLTKGALPYGTFNDTKNLYNSLDSDVD
Ga0209199_11505261	3300025809	Pelagic Marine	MLADQFLRDELNKFAKYVIQQSRSNLTKGKKNSSKELYNSLGYDISEASGKTSLGF
Ga0209199_11631491	3300025809	Pelagic Marine	MLADQFLRDELNKFAKYVIQQSRSNLTKGSQPYGSYND
Ga0209533_11270323	3300025874	Pelagic Marine	MLADKALQEELNKFAKYVIQQSRSNLSKSDKNVSKELYNSLGYNVEVTEKGAEL
Ga0208165_10276751	3300027218	Estuarine	MLADKSLQEELNKFAKYVIQQSRSNLTKGDSDYGTYNDTKTLYNSLKG
Ga0209037_11771692	3300027612	Marine	MLADKYLQDELNKFAKYVIQQSRSNLSKSNRNDTKALYNSLGYDIELTTKGAELGFN
(restricted) Ga0233415_101158353	3300027861	Seawater	MLADKSIQEELNKFAKYVIQQSRSNLSKSDKNDTKGLYN
Ga0209713_110420612	3300027883	Marine	MLADKYLQDELNKFGKYVIQQSRSNLTKGKAPYGSYNDTKSLYNSLGSDVQETAKGFS
Ga0209536_1022017861	3300027917	Marine Sediment	MLADKYLRDELNKFAKYVIQQSRSNLTKGASPYGTFNDTKNLYNSLGYTDPTTKNEVTSFAFKMAD
Ga0209272_102062362	3300027967	Marine Sediment	MLADKALQEELNKFAKYVIQQSRSNLTKGSSDYGTYNDTKGLYNS
Ga0209165_100601903	3300027978	Marine Sediment	MLADKALQEELNKFAKYVIQQSRSNLTKGDSDYGTYNDTKGLYNSLKGNVTPTKNGANLDIEMADY
(restricted) Ga0233413_103256511	3300027996	Seawater	MLADKYLQDELNKFAKYVIQQSRSNLSKSDKNDTKALYNSLGYDIEL
(restricted) Ga0233413_104552822	3300027996	Seawater	MLADKALQEELNKFAKYVIQQSRSNLSKSDKNDTKALYNSLGYDIELTTKGAELGF
Ga0256368_10350231	3300028125	Sea-Ice Brine	MLNKEVQNELNKFAKYVIQQSRSNLTKGDKNVSKDLYNSLGYK
Ga0228619_11060841	3300028130	Seawater	MLADKYLRDELNKFAKYVIQQSRSNLTKSKKNASKELYNSL
Ga0257114_11854043	3300028196	Marine	MLADQYLRDELNKFAKYVIQQSRSNLSKSKKNASKELYNSLGYGISESA
Ga0135224_10257111	3300029753	Marine Harbor	MLADKYLRDELNKFAKYVIQQSRSNLTKGKKNASKELYNSLGYDISQKGETTS
Ga0307488_101195024	3300031519	Sackhole Brine	MLNKQAQDSLNGFAKYVIQQSRSNLTKGGKKASGDLYNSLGYNVEQTAKGFSLSFEMEDY
Ga0307488_107841102	3300031519	Sackhole Brine	MLADKALQEELNKFAKYVIQQSRSNLSKSDKNDTKALYNSLGYDIELTTKGAELG
Ga0302114_102212971	3300031621	Marine	MLADQFLRDELNKFAKYVIQQSRSNLTKGKKNSSKELYNSLGYDISEASGKTSLGFD
Ga0307985_100675951	3300031629	Marine	MLADKALQQELNKFAKYVIQQSRSNLSKSDKNDTKALYN
Ga0307377_109011551	3300031673	Soil	MLADKYLQDELNKFAKYVIQQSRSNLSKSNRNDTKALYNSLGYDIELTTKGAELGF
Ga0316196_100900191	3300032252	Sediment	MLADKSLQEELNKFAKYVIQQSRSNLSKSDKNDTKGLYNSLGYNV
Ga0335010_0327111_1_126	3300034092	Freshwater	MRKQKLQQEIKKFRDYVIKQSRSNLTKFKKNASKELYNSLKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters