Basic Information | |
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Family ID | F092819 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 107 |
Average Sequence Length | 42 residues |
Representative Sequence | MSAPSVQVETRGAVALVTLNRPESANTLNLQMAMDLLAA |
Number of Associated Samples | 105 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 96.26 % |
% of genes near scaffold ends (potentially truncated) | 99.07 % |
% of genes from short scaffolds (< 2000 bps) | 85.98 % |
Associated GOLD sequencing projects | 101 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.37 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (94.393 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.364 % of family members) |
Environment Ontology (ENVO) | Unclassified (24.299 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (44.860 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 17.91% β-sheet: 20.90% Coil/Unstructured: 61.19% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.37 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Compost Surface Soil Peatlands Soil Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Tropical Peatland Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Soil Palsa Plant Litter Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Ectomycorrhiza Switchgrass Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Avena Fatua Rhizosphere Green-Waste Compost Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GBAN_1578580 | 2029527000 | Green-Waste Compost | MSTPTVNVETRGAVALVTLNRPDVSNTLNLQVAMDLLA |
ICChiseqgaiiDRAFT_24295011 | 3300000033 | Soil | MSAPTVEVQSRGAVAIVTINRPEVSNTLNLQTAMDLL |
JGI1027J12803_1012336581 | 3300000955 | Soil | MSAPVVQVETRGAVALVILNRPESGNALNLQVAMDLLAAAMTCARNAAV |
Ga0068869_1020111302 | 3300005334 | Miscanthus Rhizosphere | MSAPTVQVESRGAVTVVTLNRPDSSNTLNIQMAMDLLAAAMT |
Ga0070709_110841991 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MSAPCVQVETRGTVAVVTLNRPDTSNAINLQTAMDLLAAAMTCARNNT |
Ga0070713_1023462732 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MSTPSVQVETRGAVALVTLNRPDGANTLNLEMAMDLLAAAMTCGR |
Ga0068867_1008783791 | 3300005459 | Miscanthus Rhizosphere | MSTTTVEVESRGAVAVVTINRPESGNALSLEVGMDLMAAA |
Ga0066697_103922383 | 3300005540 | Soil | MAAATVEVETRGAVAIVTLNRPQSANTLNLQMAMDL |
Ga0070733_109609592 | 3300005541 | Surface Soil | MAAPAVQVETRGAVALVTLNRPDSGNALNLQMAMDLMAA |
Ga0070686_1003056503 | 3300005544 | Switchgrass Rhizosphere | MSAPLVEMETRGSVAVITLNRPDLSNTLNLQMAMDLLAAAMTCGRNSAVR |
Ga0066700_100125761 | 3300005559 | Soil | MAAASVEVETRGAVALVTLNRPESANTLNLQMAMDLLAAAMTCARN |
Ga0070664_1000233401 | 3300005564 | Corn Rhizosphere | MSTSSVQVDTRGAVAVVTLNRPESSNTLNLEMAMDLLAAAMTCGRNPA |
Ga0066706_104023471 | 3300005598 | Soil | MAPASVEVETRGAVALVTLNRPQSSNTLNLRMAMDLLAAAMT |
Ga0066903_1013398504 | 3300005764 | Tropical Forest Soil | MSAPAVQVETRGAVALVTLNRPESGNALNLQVAMDLLA |
Ga0068863_1008890501 | 3300005841 | Switchgrass Rhizosphere | MSAPTVQVESRGAVAIVTINRPEVSNTLNLQTAMDLLAAAMTCGRN |
Ga0070715_100125551 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | VSAPTVQVETRGAVALVTLNRPENANTLNLQMAMD |
Ga0075021_102813711 | 3300006354 | Watersheds | VSTSSVQVETRGAVALVTLNRPESANTLNLEMAMDLLAAALTCARN |
Ga0066710_1021921163 | 3300009012 | Grasslands Soil | MAAASVEVETRGAVALVTLNRPESANTLNLQMAMDLL |
Ga0105241_116796301 | 3300009174 | Corn Rhizosphere | MSAPLVEMETRGSVAVITLNRPDLSNTLNLQMAMDLLAAAMTCGRNS |
Ga0105237_109702651 | 3300009545 | Corn Rhizosphere | MSTSSVQVETRGAVAVVTLNRPDSSNTLNLEMAMDLLAAAMTCG |
Ga0126380_119855331 | 3300010043 | Tropical Forest Soil | MATVTVEVETRGPVALVTLNRPDSANTLNLQVAMDLL |
Ga0126373_108654011 | 3300010048 | Tropical Forest Soil | VSAANVQVETRGAVALVTLNRPEHSNTLNLQLAMDLLAA |
Ga0126370_109979041 | 3300010358 | Tropical Forest Soil | MSAPSVQAETHGAVALVTLNRPEHSNTLNLQMAMDLLAAAMACARN |
Ga0136449_1019481233 | 3300010379 | Peatlands Soil | MSAPSVQVETHGAVALVTLNRPEHSNTLNLQMAMDLLAAAMACAR |
Ga0134124_119474831 | 3300010397 | Terrestrial Soil | MSAPTVQVESRGAVTVVTLNRPDSSNTLNIQMAMDLL |
Ga0134121_100497156 | 3300010401 | Terrestrial Soil | MSAPVVQVETRGAVALVILNRPESGNALNLQVAMDLLAA |
Ga0126357_13336202 | 3300010864 | Boreal Forest Soil | MSTSSVQVETRGAVALVTLNRPDSANTFNLEMAMDLLAAAM |
Ga0150983_147220673 | 3300011120 | Forest Soil | MSAPVVQVDTRGAVALVTLNRPDSGNALNLQVAMDLLAAAMTCAR |
Ga0137399_104522441 | 3300012203 | Vadose Zone Soil | MAAASIEVETRGAVALVTLNRPESANTLNLQMAMDL |
Ga0137384_104365231 | 3300012357 | Vadose Zone Soil | MAAATVEVETRGAVAVVTLNRPQSANTLNLQMAMDLLAAAMACA |
Ga0150984_1167203302 | 3300012469 | Avena Fatua Rhizosphere | MSAPTVQVESRGAVAIVTINRPDVSNTLNLQTAMDLLAAAMTCGRNSGVR |
Ga0137397_103579441 | 3300012685 | Vadose Zone Soil | MSTPSVQVETRGPVALVRLNRPESSNAINLQMAMDLLAAAMTC |
Ga0137416_105434123 | 3300012927 | Vadose Zone Soil | MAAASIEVETRGAVALVTLNRPESANTLNLQMAMDLLAAAMTCARNAA |
Ga0164305_100098021 | 3300012989 | Soil | VSAPTVQVETRGAVALVTLNRPENANTLNLQMAMDLLAAALACARNAAV |
Ga0163163_124028181 | 3300014325 | Switchgrass Rhizosphere | MSTPSVQVETRGAVALVTLNRPDSANTLNLETAMDLLAAAMTCARNPA |
Ga0182032_116053471 | 3300016357 | Soil | MSAPAVQVETRGAVALVTLNRPESGNAINLQVAMDLLAAAMT |
Ga0182037_100468926 | 3300016404 | Soil | MSAPAVQVETRGAVALVTLNRPESGNALNLQVAMDLLAAAMT |
Ga0182744_12492222 | 3300017553 | Compost | MSAETVEVESRGAVAIVTINRPDASNTLNLQTAMDLLAAAMTCGRNSAV |
Ga0187824_101437963 | 3300017927 | Freshwater Sediment | MSAPSVQVETRGAVALVTLNRPESGNALNLRMAMDLLAAAMTCAR |
Ga0187825_101986121 | 3300017930 | Freshwater Sediment | MSAPSVQVETRGAVALVTLNRPESGNALNLRMAMDLLAAAMT |
Ga0187809_103293871 | 3300017937 | Freshwater Sediment | MSAPSVQVETRGAVALVTLNRPESGNALNLRMAMDLL |
Ga0187778_101761821 | 3300017961 | Tropical Peatland | MSASTVSVDTRGAVAIITLNRPDNANTLNLQMGMDLLA |
Ga0187776_104603261 | 3300017966 | Tropical Peatland | VSVPSVQLETRGAVALVTLNRPDHSNTLNLQMAMDLLAAAMAC |
Ga0187783_113865541 | 3300017970 | Tropical Peatland | VSAPSVQVETRGAVALVTLNRPDNGNAINLQMAMDLLAAALTCAGNTSVR |
Ga0187781_110682042 | 3300017972 | Tropical Peatland | MAAPAVQVETRGAVALVTLNRPDSGNALNLQMAMDLLA |
Ga0187780_100416581 | 3300017973 | Tropical Peatland | MSAASVQVETHGAVALVTLNRPEHSNTLNLQMAMDLLAAAMACARNAAVRA |
Ga0190272_126007871 | 3300018429 | Soil | MSTSTIDVETRGAVALVTINRPDSSNTLNLQVAMDLLAAA |
Ga0066655_100167231 | 3300018431 | Grasslands Soil | MAAATVEVETRGAVALVTLNRPESANTLNLQMAMDLLAAAMTCARNAA |
Ga0210399_114840052 | 3300020581 | Soil | MSAPSVQVETHGAVALVTLNRPEHSNTLNLQMAMDLLA |
Ga0210406_108536201 | 3300021168 | Soil | MSTSSVQVETRGAVALVTLNRPDSSNTLNLEMAMDLLAAAMTCGRNPA |
Ga0210408_110852372 | 3300021178 | Soil | VSTASVQVETHGAVALVRLNRPEHANTLNLQMAMDLLAAAMACAR |
Ga0210388_110703063 | 3300021181 | Soil | VAAPTVQVETRGAVALVTLNRPESANTLNLQMGMDLLAAALACA |
Ga0210393_101670631 | 3300021401 | Soil | VAAPTVQVETRGAVALVTLNRPESANTLNLQMGMDLLAAALAC |
Ga0210385_113750111 | 3300021402 | Soil | MSAPTVQVETRGAVALVTLNRPDSANTLNLQMAMDLLA |
Ga0210389_115588271 | 3300021404 | Soil | VSAPTVQVETRGAVALVTLNRPESANTLNLQMGMDLLAAAL |
Ga0210383_102655271 | 3300021407 | Soil | MSAPSVQVETHGAVALVTLNRPEHSNTLNLQMAMDLLAAAMAC |
Ga0242658_12234252 | 3300022530 | Soil | MSAPNVHVETRGPVALISLNRPESANTINLQTAMDLLAA |
Ga0247758_10434823 | 3300023079 | Plant Litter | MSAPSVQVESRGAVAVVTINRPDVSNTLNLQTAMDLLAA |
Ga0247771_11506952 | 3300023267 | Plant Litter | MSAPSVQVESRGAVAVVTINRPDVSNTLNLQTAMDL |
Ga0247784_10163264 | 3300023270 | Plant Litter | MSAPTVQVESRGPVAVITLNRPDVSNTLNLQTAMDLLAAAMTCGRNSAV |
Ga0209341_103467983 | 3300025325 | Soil | MSQSTVNVETRGAVALVTIDRPDDANTLNVQVGMD |
Ga0207680_113744881 | 3300025903 | Switchgrass Rhizosphere | MSTSSVQVETRGAVAVVTLNRPESSNTLNLEMAMDLLAAAM |
Ga0207671_105180223 | 3300025914 | Corn Rhizosphere | MSAPSVQVETRGRVALVTLNRPDSSNTINLQMAMDLLAAAM |
Ga0207700_117797062 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MSTPSVQVETRGAVALVTLNRPDGANTLNLEMAMDLLAAAMTCGRNP |
Ga0207711_104367241 | 3300025941 | Switchgrass Rhizosphere | VSAPTVQVETRGAVALVTLNRPENANTLNLQMAMDLLAAALACARNAAVR |
Ga0209236_11469131 | 3300026298 | Grasslands Soil | MAAATVEVETRGAVAVVTLNRPQSANTLNLQMAMDLLAAAMTC |
Ga0179593_11437291 | 3300026555 | Vadose Zone Soil | MAPASVEVETRGAVALVTLNRPQSSNTLNLQMAMDLLAAAMTCA |
Ga0179593_17793991 | 3300026555 | Vadose Zone Soil | MAPASVEVRTRGAVAMGTLKPHAAPKRPLQMSMDLLAAAMTCAATPR |
Ga0207505_1037942 | 3300027459 | Soil | VAAPSVQVETRGAVALVTLNRPDSANTLNLQMAMDLLA |
Ga0209420_11999911 | 3300027648 | Forest Soil | MSTATVNVETRGAVAVVTLNRPAQSNTLSLQMGMDLLAA |
Ga0209380_103479163 | 3300027889 | Soil | MATATVEVETQGAVALVTLNRPDSNNTLNLQMAMDLLAAS |
Ga0209168_101929221 | 3300027986 | Surface Soil | MSVPSVQVETRGPVALVTLNRPDSANTINLQMAMDL |
Ga0308309_116045362 | 3300028906 | Soil | MSTATVDVETRGAVAIVTLNRPAQSNTLSLQMGMDLLAAAMTCARSTAV |
Ga0311339_115099561 | 3300029999 | Palsa | MTNSSVYVETSGAAALVTLNRPDSANTLDLQAAMDLLSVAMTCARNPTVRV |
Ga0302179_101101581 | 3300030058 | Palsa | MSTATVDVETRGAVAIVTLNRPAQSNTLSLQMGMDLLAAAMTCARS |
Ga0302311_101523081 | 3300030739 | Palsa | MSAPTVQVETRGPVALVRLNRPESSNAINLQMAMDLLAAAMT |
Ga0170834_1047040383 | 3300031057 | Forest Soil | VSTASVQVETHGAVALVTLNRPEHSNTLNLQMARA |
Ga0170823_149386721 | 3300031128 | Forest Soil | MSTPSVQVETRGAVALVTLNRPESANTLNLQMGMDL |
Ga0307508_103036574 | 3300031616 | Ectomycorrhiza | MSTPSVQVETRGPVALVRLNRPESSNTINLQMAMDLLAAAMTCARNNNV |
Ga0318496_106416942 | 3300031713 | Soil | VSAPTVQVETRGSVALVTFNRPESGNTLNLQMAMDLLAAAMTCARNAA |
Ga0318493_101079521 | 3300031723 | Soil | MSAPAVQVETRGAVALVTLNRPESGNALNLQVAMDLLAAAMTCARN |
Ga0318493_107236421 | 3300031723 | Soil | MSAPAVQVETHGAVALVILNRPESGNAINLQVAMDLL |
Ga0307468_1009216111 | 3300031740 | Hardwood Forest Soil | VSAPTVQVETRGAVALVTLNRPENANTLNLQMAMDL |
Ga0306918_115123561 | 3300031744 | Soil | MSAPAVQVETRGAVALVTLNRPESGNALNLQVAMDLLAAAM |
Ga0318492_101463524 | 3300031748 | Soil | MSAPAVQVETRGAVALVILNRPESGNALNLRVAMDLLAAAMTCARNAA |
Ga0318494_102392314 | 3300031751 | Soil | MSAPAVQVETRGAVALVILDRPESGNALNLQVAMDLLA |
Ga0318535_105428692 | 3300031764 | Soil | MSAATVQVETHGAVALVTLNRPDNSNTLNLQMAMDLLAAALTCARNAAVR |
Ga0318509_100563551 | 3300031768 | Soil | MSAPVVQVETRGAVALVTLNRPESGNALNLQVAMDLL |
Ga0318521_102653421 | 3300031770 | Soil | VSAPTVQVETRGSVALVTFNRPESGNTLNLQMAMDLLAA |
Ga0310917_101471781 | 3300031833 | Soil | MSAPAVQVETRGAVALVTLNRPESGNALNLQVAMDLL |
Ga0318517_102018031 | 3300031835 | Soil | MSAPAVQVETHGAVALVILNRPESGNAINLQVAMDLLAAAMTCARN |
Ga0318511_100715451 | 3300031845 | Soil | MSAPAVQVETHGAVALVILNRPESGNAINLQVAMDLLAAAMTCARNAAVRA |
Ga0306925_111362121 | 3300031890 | Soil | MSAPAVQVETRGAVALVILNRPESGNALNLQVAMD |
Ga0318522_103453411 | 3300031894 | Soil | MSAPAVQVETRGAVALVILNRPESGNALNLRVAMDLL |
Ga0310913_103476054 | 3300031945 | Soil | MSAPAVQVETRGAVALVILNRPESGNALNLRVAMDLLAAAMTC |
Ga0310909_110594211 | 3300031947 | Soil | MSAPAVQVETRGAVALVTLNRPESGNAINLQVAMDLLAAAMTCARNAAVR |
Ga0307479_111064143 | 3300031962 | Hardwood Forest Soil | MSAPVVQVDTRGAVALVTLNRPDSGNALNLQVAMDL |
Ga0318549_100213055 | 3300032041 | Soil | MSAPAVQVETHGAVALVILNRPESGNAINLQVAMDLLAAAMTCARNAAVR |
Ga0318533_102508794 | 3300032059 | Soil | MSAPVVQVETRGAVALVTLNRPDSGNALNLQVAMDLLAAA |
Ga0306920_1002761601 | 3300032261 | Soil | MSAPAVQVETRGAVALVILNRPDSGNALNLQVAMDLLAAAMT |
Ga0335085_100731377 | 3300032770 | Soil | MSAPSVQVETRGAVALVTLSRPESANTLNLQMAMDLLAAAL |
Ga0335079_116335293 | 3300032783 | Soil | MSASTVEVDTRGAVTIITLNRPDDGNALNLQMGMD |
Ga0335080_102040745 | 3300032828 | Soil | MSAPSVQVETRGAVALVTLNRPESANTLNLQMGMDLLAAALACARNAEVR |
Ga0335081_104872404 | 3300032892 | Soil | MSAPSVQVETRGAVALVTLNRPESANTLNLQMAMDLLAA |
Ga0335072_109405101 | 3300032898 | Soil | MSAPCVHVETRGPVALVRLNRPESANTIDLQTAMDLLAAAMTCSRN |
Ga0335076_100578511 | 3300032955 | Soil | VSVASVQVETHGAVALVTLNRPEHSNTLNLQMAMDLLAAA |
Ga0310811_114560821 | 3300033475 | Soil | MSAPSVQVETRGPVALVTLNRPESSNTLNLQMAMDLLAA |
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