Metagenome / Metatranscriptome Family F092812

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092812
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	47 residues
Representative Sequence	LGSHFGFHGQRVETRAELEGALQGALAATKGGKTAILNVMVSR
Number of Associated Samples	93
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.93 %
% of genes near scaffold ends (potentially truncated)	99.07 %
% of genes from short scaffolds (< 2000 bps)	94.39 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.196 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.561 % of family members)
Environment Ontology (ENVO)	Unclassified (24.299 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.860 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.54% β-sheet: 16.90% Coil/Unstructured: 60.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF03401	TctC	79.25
PF00152	tRNA-synt_2	7.55
PF11794	HpaB_N	0.94
PF00043	GST_C	0.94
PF13416	SBP_bac_8	0.94
PF13183	Fer4_8	0.94
PF00903	Glyoxalase	0.94
PF01976	DUF116	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	79.25
COG0017	Aspartyl/asparaginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	7.55
COG0173	Aspartyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	7.55
COG1190	Lysyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	7.55
COG2269	Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway)	Translation, ribosomal structure and biogenesis [J]	7.55
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.94
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG1852	Predicted redox protein with CxxCxxC motif, DUF116 family	General function prediction only [R]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.20 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.20 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.20 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	89.72 %
Unclassified	root	N/A	2.80 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	74.77 %
Unclassified	root	N/A	2.80 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.82 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	14.02 %
Unclassified	root	N/A	2.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.08 %
Unclassified	root	N/A	2.80 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.87 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.87 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.08 %
Unclassified	root	N/A	2.80 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.87 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.87 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.08 %
Unclassified	root	N/A	2.80 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.87 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.87 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.08 %
Unclassified	root	N/A	2.80 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	1.87 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.87 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.08 %
Unclassified	root	N/A	2.80 %
Rhizobium sp. CF080	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF080	1.87 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.87 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459013\|GO6OHWN02IR62G	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	501	Open in IMG/M
3300001081\|JGI12662J13196_1016430	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300001431\|F14TB_100307670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1104	Open in IMG/M
3300005185\|Ga0066811_1014401	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300005332\|Ga0066388_103027920	All Organisms → cellular organisms → Bacteria → Proteobacteria	859	Open in IMG/M
3300005332\|Ga0066388_108549997	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300005343\|Ga0070687_100156498	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300005437\|Ga0070710_10806638	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300005444\|Ga0070694_100042423	All Organisms → cellular organisms → Bacteria → Proteobacteria	3039	Open in IMG/M
3300005554\|Ga0066661_10290830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1007	Open in IMG/M
3300005617\|Ga0068859_101153525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	853	Open in IMG/M
3300005764\|Ga0066903_100940430	All Organisms → cellular organisms → Bacteria	1570	Open in IMG/M
3300005764\|Ga0066903_102493062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF080	1001	Open in IMG/M
3300005764\|Ga0066903_103514535	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300006028\|Ga0070717_10373974	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300006028\|Ga0070717_10659439	All Organisms → cellular organisms → Bacteria → Proteobacteria	950	Open in IMG/M
3300006028\|Ga0070717_11703132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300006051\|Ga0075364_10547597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. CF080	791	Open in IMG/M
3300006163\|Ga0070715_10050829	All Organisms → cellular organisms → Bacteria	1781	Open in IMG/M
3300006577\|Ga0074050_12001445	All Organisms → cellular organisms → Bacteria → Proteobacteria	1150	Open in IMG/M
3300006847\|Ga0075431_100338821	All Organisms → cellular organisms → Bacteria → Proteobacteria	1513	Open in IMG/M
3300006847\|Ga0075431_101116575	All Organisms → cellular organisms → Bacteria → Proteobacteria	753	Open in IMG/M
3300006854\|Ga0075425_102629939	All Organisms → cellular organisms → Bacteria → Proteobacteria	556	Open in IMG/M
3300006904\|Ga0075424_101450516	All Organisms → cellular organisms → Bacteria → Proteobacteria	729	Open in IMG/M
3300007076\|Ga0075435_100799923	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
3300009088\|Ga0099830_10022628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4119	Open in IMG/M
3300009156\|Ga0111538_12281462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	680	Open in IMG/M
3300009792\|Ga0126374_11711520	All Organisms → cellular organisms → Bacteria → Proteobacteria	523	Open in IMG/M
3300010321\|Ga0134067_10220611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300010337\|Ga0134062_10089196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1310	Open in IMG/M
3300010359\|Ga0126376_12099812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300010360\|Ga0126372_10637132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1030	Open in IMG/M
3300010362\|Ga0126377_10627467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1121	Open in IMG/M
3300010362\|Ga0126377_13563622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300010375\|Ga0105239_13510082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300010376\|Ga0126381_101115217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1140	Open in IMG/M
3300010376\|Ga0126381_101516682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	969	Open in IMG/M
3300010376\|Ga0126381_102260245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	782	Open in IMG/M
3300010398\|Ga0126383_11307854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	815	Open in IMG/M
3300010398\|Ga0126383_11563556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	749	Open in IMG/M
3300010398\|Ga0126383_12475556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	604	Open in IMG/M
3300010868\|Ga0124844_1146950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	892	Open in IMG/M
3300011106\|Ga0151489_1723365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	612	Open in IMG/M
3300012070\|Ga0153963_1060156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300012203\|Ga0137399_11061125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	682	Open in IMG/M
3300012206\|Ga0137380_11423888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300012207\|Ga0137381_10628495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	935	Open in IMG/M
3300012351\|Ga0137386_11013056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	590	Open in IMG/M
3300012908\|Ga0157286_10331185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	568	Open in IMG/M
3300012957\|Ga0164303_10089330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1494	Open in IMG/M
3300012984\|Ga0164309_10960027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	701	Open in IMG/M
3300012988\|Ga0164306_10794124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	761	Open in IMG/M
3300015359\|Ga0134085_10261157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	755	Open in IMG/M
3300016294\|Ga0182041_12008263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300016319\|Ga0182033_11085073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300016357\|Ga0182032_10910959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	748	Open in IMG/M
3300016422\|Ga0182039_11012080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300016744\|Ga0183099_1258248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300016744\|Ga0183099_1258248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300017965\|Ga0190266_11353881	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300018058\|Ga0187766_10751861	Not Available	677	Open in IMG/M
3300018071\|Ga0184618_10477218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	524	Open in IMG/M
3300018082\|Ga0184639_10481900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	629	Open in IMG/M
3300020579\|Ga0210407_10161763	All Organisms → cellular organisms → Bacteria	1729	Open in IMG/M
3300021418\|Ga0193695_1045373	Not Available	954	Open in IMG/M
3300021560\|Ga0126371_13940512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300022534\|Ga0224452_1006462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2909	Open in IMG/M
3300022883\|Ga0247786_1063666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	761	Open in IMG/M
3300025898\|Ga0207692_10590474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300025919\|Ga0207657_10811261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	723	Open in IMG/M
3300025932\|Ga0207690_10124264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1879	Open in IMG/M
3300025939\|Ga0207665_10017030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4774	Open in IMG/M
3300025965\|Ga0210090_1025710	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300026319\|Ga0209647_1214560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300026490\|Ga0257153_1044212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	916	Open in IMG/M
3300027862\|Ga0209701_10081653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2037	Open in IMG/M
3300028714\|Ga0307309_10032122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1078	Open in IMG/M
3300028755\|Ga0307316_10059878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1289	Open in IMG/M
3300028778\|Ga0307288_10446057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	531	Open in IMG/M
3300028811\|Ga0307292_10241871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	748	Open in IMG/M
3300028875\|Ga0307289_10157200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	935	Open in IMG/M
3300031199\|Ga0307495_10013205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1262	Open in IMG/M
3300031561\|Ga0318528_10419453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	718	Open in IMG/M
3300031680\|Ga0318574_10674109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300031719\|Ga0306917_11570084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300031720\|Ga0307469_10875139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	830	Open in IMG/M
3300031724\|Ga0318500_10339515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	740	Open in IMG/M
3300031740\|Ga0307468_100024041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2763	Open in IMG/M
3300031747\|Ga0318502_10091389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1674	Open in IMG/M
3300031748\|Ga0318492_10671454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300031768\|Ga0318509_10395888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300031779\|Ga0318566_10481251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300031780\|Ga0318508_1226539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300031781\|Ga0318547_10455036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300031781\|Ga0318547_10932893	Not Available	542	Open in IMG/M
3300031782\|Ga0318552_10395421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300031805\|Ga0318497_10867693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300031821\|Ga0318567_10491785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	696	Open in IMG/M
3300031835\|Ga0318517_10043115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1866	Open in IMG/M
3300031880\|Ga0318544_10344836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300031890\|Ga0306925_12184530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	515	Open in IMG/M
3300031942\|Ga0310916_10242793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1516	Open in IMG/M
3300031951\|Ga0315904_10983500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	671	Open in IMG/M
3300031959\|Ga0318530_10332719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	628	Open in IMG/M
3300032059\|Ga0318533_11012201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300032059\|Ga0318533_11319751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300033290\|Ga0318519_10456923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	766	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.92%
Host-Associated	Host-Associated	11.21%
Engineered	Engineered	1.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.24%
Plants	Host-Associated → Plants	10.28%
Aquatic	Environmental → Aquatic	4.67%
Bioreactor	Engineered → Bioreactor	1.87%
Fungi	Host-Associated → Fungi	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.41%
Sediment	Environmental → Aquatic → Sediment	2.80%
Anaerobic	Engineered → Bioreactor → Anaerobic	1.87%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Marine	Environmental → Aquatic → Marine	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Roots	Host-Associated → Plants → Roots	0.93%
Mycelium	Host-Associated → Fungi → Mycelium	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.42%
Loam	Environmental → Terrestrial → Soil → Loam	15.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.87%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.87%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.21%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.87%
Bioreactor	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor	1.87%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
3300001081	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012070	Attine ant fungus gardens microbial communities from Florida, USA - TSFL047 MetaG	Host-Associated	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016744	Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1	Engineered	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025965	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N57_00657300	2170459013	Grass Soil	FGFHGARVETLAELKGALQTALAATKAGKTAILNVHVNR
JGI12662J13196_10164301	3300001081	Forest Soil	EGPDYAELGSHFGFHGARVEKLGALKGALKSALAATKDGKTYLLNVVLTR*
F14TB_1003076701	3300001431	Soil	LGSHFGFHGERVEYRAELEIALRSALAATKEGKTAILNVLLSR*
Ga0066811_10144012	3300005185	Soil	DYEQLGSHFGFHGARVEILAELKGAIQAALSATKAGKTAILNVHVSR*
Ga0066388_1030279201	3300005332	Tropical Forest Soil	GASASKDLHFGVTIEGPEYAELGSHFGFHGQRVEKLAELKGALAAALAATKAGKTSILNVVVTR*
Ga0066388_1085499972	3300005332	Tropical Forest Soil	LGSHFGFHGQRVENRAELEGALQNALAATRGGKTAILNVLLSR*
Ga0070687_1001564983	3300005343	Switchgrass Rhizosphere	FGFHGARVETLAELKGAIQAALSATKAGKTAILNVHVSR*
Ga0070710_108066382	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ELGSHFGFHGQRVEKLAELKGALASALAATKAGKTSILNVVVTR*
Ga0070694_1000424234	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	GSHFGFHGARVETLAELKGAIQAALSATKAGKTAILNVHVSR*
Ga0066661_102908301	3300005554	Soil	AMRQGHVHHYPDGASASENLHYGVTIDGPNYEQLGGHFGFHGQRVEKVGELNRALRDALAAANGGRTAILNACVTR*
Ga0068859_1011535251	3300005617	Switchgrass Rhizosphere	GFHGARVETLAELKGALQAGLAAIKAGKTAILNVHVNR*
Ga0066903_1009404301	3300005764	Tropical Forest Soil	ELGSHFGFHGARVEKRADLPGALKGALAATKDGRTAILNVMVNQ*
Ga0066903_1024930622	3300005764	Tropical Forest Soil	LGSHFGFHGQRVETRAELEGALQGALAATKGGKTAILNVMVSR*
Ga0066903_1035145352	3300005764	Tropical Forest Soil	HFGFHGERVEYRAELEIALKSALAAMKEGRTAILNVMASR*
Ga0070717_103739741	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LGSHFGFHGARVETLAELKGAIQAALSATKAGKTAILNVHVSR*
Ga0070717_106594391	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	FHGQRVEKLGDLKGALQGALAANKGSKTAILNVMVTR*
Ga0070717_117031321	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	FGFHGQRVENRAELDGALQSALAATKGGKTAILNVVVSR*
Ga0075364_105475972	3300006051	Populus Endosphere	LAALRGGERVEKLADLKGALQKALAATKSGKTAILNVVVTR*
Ga0070715_100508291	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	PDYEQLAGHFGFHGQRVEKSAELPGALRGALAAMKDGRTAIVNACVTQ*
Ga0074050_120014452	3300006577	Soil	FHGARVETLAELKEAIQAALSATKAGKTAILNVHVSR*
Ga0075431_1003388211	3300006847	Populus Rhizosphere	RLGSHFGFHGERVEKLADLEGALQKALAATKSGKTAILNVVVTR*
Ga0075431_1011165751	3300006847	Populus Rhizosphere	YEQLGSHFGFHGQRVEKLDEVKGALQKALAAVQGGKTAILNVVVSR*
Ga0075425_1026299391	3300006854	Populus Rhizosphere	GSHFGFQGQRVEKLADLKGALQGALAANKGGKTAILNVMLTR*
Ga0075424_1014505162	3300006904	Populus Rhizosphere	ARVETLAELKDAIQAALAATKAGKTAILNVHVSR*
Ga0075435_1007999231	3300007076	Populus Rhizosphere	PDYEQLGSHFGFHGARVETLAELKGAIQAALSATKAGKTAILNVHVSR*
Ga0099830_100226285	3300009088	Vadose Zone Soil	FGFHGERVEYRAELEVALSSALAATKEGKTAILNVVVSH*
Ga0111538_122814621	3300009156	Populus Rhizosphere	ELHFGVTIDGPDYESLGSHFGFHGQRVENRAELATALTRALAATREGRTAILNAVVTR*
Ga0126374_117115202	3300009792	Tropical Forest Soil	GSHFGFHGQRVEKLADLKGALQAALAANKGGKTSILNVHVTR*
Ga0134067_102206112	3300010321	Grasslands Soil	FGFHGRRVEKREELPGALKGALAATNDGRTAILNVMVSR*
Ga0134062_100891963	3300010337	Grasslands Soil	GSHFGFHGERVEYRAELDLALQSALTATQEGRTAILNVVVSR*
Ga0126376_120998121	3300010359	Tropical Forest Soil	GQRVENRAELEGALQSALAATQDGRTAILNVVVSR*
Ga0126372_106371321	3300010360	Tropical Forest Soil	PDYERLGSHFGFHGQLVENRAELEGALQSALAASKGGRTAILNVMVSR*
Ga0126377_106274671	3300010362	Tropical Forest Soil	KDLHYGVTIDGPDYEEFGSHFGFHGQRVENRAELEDALQSALAATKGGKTTILNVMVSR*
Ga0126377_135636222	3300010362	Tropical Forest Soil	YPDGASASKDLHFGVTIDGPEYAELGSHFGFHGQRVEKLAELKGALAAALAATQAGKTSILNVMVTR*
Ga0105239_135100821	3300010375	Corn Rhizosphere	GVTIDGPDYESLGSHFGFHGQRVENRAELATALTRALAATREGRTAILNAVVTR*
Ga0126381_1011152171	3300010376	Tropical Forest Soil	DYEEFGSHFGFHGQRVENRAELEGALQSALAATKAGKTAILNVMVSR*
Ga0126381_1015166822	3300010376	Tropical Forest Soil	ERLGSHFGFHGQRVENRAELEGALQSALAASKGGRTAILNVMVSR*
Ga0126381_1022602451	3300010376	Tropical Forest Soil	GQRVENRAELEGALQSALAASKGGRTAILNVMVSR*
Ga0126383_113078542	3300010398	Tropical Forest Soil	VTIDGPDYERLGSHFGFHGQRVENRAELEGALQSALAASKGGRTAILNVMVSR*
Ga0126383_115635561	3300010398	Tropical Forest Soil	IDGPDYEELGSHFGFHGQRVENRAELEGALQSALAASKGGRTAILNVMVSR*
Ga0126383_124755562	3300010398	Tropical Forest Soil	EEFGSHFGFHGQRVENRAELEGALQSALAATKGGKTAILNVMVSR*
Ga0124844_11469502	3300010868	Tropical Forest Soil	HFGVTIDGPDYENLGSHFGFHGQRVENRAELATALTRALAATREGRTALLNAVVTR*
Ga0151489_17233651	3300011106	Soil	PDYEQLGSHFGFHGARVETLAELKGAIQAALAATKAGKTAILNVHVSR*
Ga0153963_10601562	3300012070	Attine Ant Fungus Gardens	FHGRRVENVAELDDAVRGALAAVKGGRTAILNVHVTR*
Ga0137399_110611251	3300012203	Vadose Zone Soil	ERVEYHAELEIALRSALTATQEGRTAILNVVVSR*
Ga0137380_114238882	3300012206	Vadose Zone Soil	RLGSHFGFHGERVEYRAELEVALSSALAATKEGKTAILNVVVSQ*
Ga0137381_106284952	3300012207	Vadose Zone Soil	DYERLGSHFGFHGERVEYRAELEVALSSALAATKEGKTAILNVVVSQ*
Ga0137386_110130562	3300012351	Vadose Zone Soil	SASKDLHYGVKIDGPDYERLGSHFGFDGQRVERLDELKAALQKALVAVQGGKTALLNVVLTR*
Ga0157286_103311852	3300012908	Soil	EQLGSHFGFHGARVETLAELKGALQAGLAAIKAGKTAILNVHVNR*
Ga0164303_100893303	3300012957	Soil	IDGPDYEQLGSHFGFHGARVETLAELKGAIQTALAATKAGKTAILNVHVSR*
Ga0164309_109600271	3300012984	Soil	GARVETLAELKGAIQAALSATKAGKTAILNVHVSR*
Ga0164306_107941242	3300012988	Soil	ASKELHFGVTIDGPDYESLGSHFGFHGQRVENRAELATALTRALAATREGRTALLNAVVTR*
Ga0134085_102611572	3300015359	Grasslands Soil	TIDGPEYEKLGSHFGFHGERVEYRAELDLALQSALTATQEGRTAILNVVVSR*
Ga0182041_120082631	3300016294	Soil	SHFGFHGERVEYRAELEVALSSALAATKEGKTAILNVVVSQ
Ga0182033_110850731	3300016319	Soil	DGPDYERLGSHFGFHGQRVENRAELEGALQSALAASKGGRTSILNVMVSR
Ga0182032_109109592	3300016357	Soil	YERLGSHFGFHGQRVENRAELEGALQSALAATKAGRTAILNVVVSR
Ga0182039_110120801	3300016422	Soil	GERVEYRAELEVALSSALAATKEGKTAILNVVVSQ
Ga0183099_12582481	3300016744	Bioreactor	EQLGSHFGFHGQRVESRAELESALQSALAATKGGKTAILNVLVSR
Ga0183099_12582482	3300016744	Bioreactor	LGSHFGFHGQRVESRAELESALQSALAATKGGKTAILNVLVSR
Ga0190266_113538812	3300017965	Soil	YEQLGSHFGFHGQRVEKLGELKGALQNALAAVKGGKTALLNVHLTR
Ga0187766_107518611	3300018058	Tropical Peatland	GFHGKRLEKAAELKGALQCALAATIDGRTSILNAVLSE
Ga0184618_104772181	3300018071	Groundwater Sediment	PDGASASKDLHYGVTIDGPDYEQLGSHFGFHGQRVEKLDELKSALQKALAAVQGGKTALLNVVLTR
Ga0184639_104819001	3300018082	Groundwater Sediment	YGVTIDGPDYEQLGSHFGFHGARVETLAELKGALQAALAASKAGRTAIVNVHVNR
Ga0210407_101617633	3300020579	Soil	HFGFHGARVEKLGALKGALKSALAATKDGKTSLLNVVLTR
Ga0193695_10453731	3300021418	Soil	SHFGFHGARVEKLAALKGALKSALAATKDGKTSLLNVVLTR
Ga0126371_139405122	3300021560	Tropical Forest Soil	HYPDGASASKDLHFGVTIDGPDYERLGSHFGFHGQRVENRAELEGALQSALAASKGGRTSILNVMVSR
Ga0224452_10064621	3300022534	Groundwater Sediment	YEQLGSHFGFHGARVETLAELKGALQTALAATKAGKTAILNVHVNR
Ga0247786_10636662	3300022883	Soil	PEYEQLGSHFGFHGARVETLAELKDAIQAALAATKAGKTAILNVHVSR
Ga0207692_105904741	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ELGSHFGFHGQRVEKLAELKGALASALAATKAGKTSILNVVVTR
Ga0207657_108112612	3300025919	Corn Rhizosphere	DYEQLGSHFGFHGARVETLAELKGAIQAALSATKAGKTAILNVHVSR
Ga0207690_101242641	3300025932	Corn Rhizosphere	QLGSHFGFHGARVETLAELKGAIQAALSATKAGKTAILNVHVSR
Ga0207665_100170301	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	TIDGPDYEQLAGHFGFHGQRVEKSVELPGALRGALAATKDGRTAIVNACVTQ
Ga0210090_10257102	3300025965	Natural And Restored Wetlands	HHYPDGASATSKVHYGVTIDGPAYEDLGKHFGFHGLRVEKPSELKAAIQAALDATKSGKTSILNVMLSK
Ga0209647_12145601	3300026319	Grasslands Soil	DYEQLGSHFGFHGERVEYRAELEVALSSALAATKEGKTAILNVVVSH
Ga0257153_10442121	3300026490	Soil	GSHFGFHGERVEYHAELEIALRSALTATQEGRTAILNVVVSR
Ga0209701_100816533	3300027862	Vadose Zone Soil	FGFHGERVEYRAELEVALSSALAATKEGKTAILNVVVSH
Ga0307309_100321221	3300028714	Soil	HFGFHGARVETLAELKGALQAALAATKAGRTAIVNVHVNR
Ga0307316_100598783	3300028755	Soil	HFGFHGARVETLAELKGALQTALAATKAGKTAILNVHVNR
Ga0307288_104460571	3300028778	Soil	HGARVEALAELKGALQAALAATKAGKTAILNVHVNR
Ga0307292_102418712	3300028811	Soil	GASASKELHFGVTIDGPDYENLGSHFGFHGQRVENRAELATALTRALAATREGRTALLNAVVTR
Ga0307289_101572001	3300028875	Soil	GARLETLAELKGAIQAALAATKAGKTAILNVHVSR
Ga0307495_100132051	3300031199	Soil	GVTIDGPDYEQLGSHFGFHGARVETLAELKGALQAALAATKAGKTAIVNVHVNR
Ga0318528_104194532	3300031561	Soil	LHFGVTIDGPDYERLGSHFGFHGQRVENRAELEGALQSALAASKGGRTSILNVMVSR
Ga0318574_106741091	3300031680	Soil	NLHYGVAIDGPNYEQLSSHFGFHGQRVEKVADLKGAIRKGLAATKEGKSSILNVVLTR
Ga0306917_115700842	3300031719	Soil	GQRVENRAELEGALQSALAATKAGRTAILNVVVSR
Ga0307469_108751392	3300031720	Hardwood Forest Soil	SHFGFHGARVETLAELKGAIQAALSATKAGKTAILNVHVSR
Ga0318500_103395151	3300031724	Soil	HFGVTIDGPDYERLGSHFGFHGQRVENRAELEGALQSALAASKGGRTSILNVMVSR
Ga0307468_1000240414	3300031740	Hardwood Forest Soil	PDYAQLGSHFGFHGARVETLAELKGAIQAALAATKAGKTAILNVHVSR
Ga0318502_100913894	3300031747	Soil	SSHFEFHGRRVERRAELPGALTDALAATKDGRSAILNVMVSR
Ga0318492_106714542	3300031748	Soil	ASHFGFHGQRVETRAELEGALQSALAATKAGKTAILNVMVSR
Ga0318509_103958881	3300031768	Soil	FEFHGRRVERRAELPGALTDALAATKDGRSAILNVMVSR
Ga0318566_104812511	3300031779	Soil	SHFGFHGQRVENRAELEGALQSALAASKGGRTAILNVMVSR
Ga0318508_12265391	3300031780	Soil	ERLGSHFGFHGQRVENRAELEGALQSALAASKGGRTSILNVMVSR
Ga0318547_104550362	3300031781	Soil	PDYEELGSHFGFHGQRVENRAELEGALQSALAATQDGRTAILNVVVSR
Ga0318547_109328932	3300031781	Soil	FHGQRVEKVADLKGAIRKGLAATKEGKSSILNVVLTR
Ga0318552_103954211	3300031782	Soil	GSHVGFHGQRVENRAELEGALQSALAASKGGRTAILNVMVSR
Ga0318497_108676931	3300031805	Soil	GSHFGFHGQRVENRAELEGALQSALAASKGGRTSILNVMVSR
Ga0318567_104917852	3300031821	Soil	TIDGPDYERLGSHFGFHGQRVENRAELEGALQSALAASKGGRTAILNVMVSR
Ga0318517_100431153	3300031835	Soil	HFGFHGERVEYRAELEVALSSALAATKEGKTAILNVVVSQ
Ga0318544_103448362	3300031880	Soil	KDLHFGVTIDGPDYERLGSHFGFHGQRVENRAELEGALQSALAASKGGRTSILNVMVSR
Ga0306925_121845301	3300031890	Soil	GVAIDGPNYEQLSSHFGFHGQRVEKVADLKGAIRKGLAATKEGKSSILNVVLTR
Ga0310916_102427932	3300031942	Soil	DYEQLGSHFGFHGERVEYRAELEVALSSALAATKEGKTAILNVVVSQ
Ga0315904_109835002	3300031951	Freshwater	TTRFHHGVEIDGPEYQDLGSHFGFFGAKTSTPAELKEALKDALAANAAGRTAILNVEMVR
Ga0318530_103327192	3300031959	Soil	DYEEFANHFGFHGQRVETRAELEGALQSALAATKAGKTAILNVMVSR
Ga0318533_110122012	3300032059	Soil	LGSHFGFHGERVEYRAELEVALSSALAATKEGKTAILNVVVSQ
Ga0318533_113197511	3300032059	Soil	RNLHYGVAIDGPNYEQLSSHFGFHGQRVEKVADLKGAIRKGLAATKEGKSSILNVVLTR
Ga0318519_104569232	3300033290	Soil	DLHFGVTIDGPDYERLGSHFGFHGQRVENRAELEGALQSALAASKGGRTSILNVMVSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092812

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences