Basic Information | |
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Family ID | F092771 |
Family Type | Metagenome |
Number of Sequences | 107 |
Average Sequence Length | 36 residues |
Representative Sequence | MVNPTSLLFGGRPTARKADEMRGNGTLEKANAVL |
Number of Associated Samples | 89 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 67.92 % |
% of genes near scaffold ends (potentially truncated) | 20.56 % |
% of genes from short scaffolds (< 2000 bps) | 92.52 % |
Associated GOLD sequencing projects | 88 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.18 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (59.813 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (10.280 % of family members) |
Environment Ontology (ENVO) | Unclassified (44.860 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (44.860 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 22.58% β-sheet: 0.00% Coil/Unstructured: 77.42% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.18 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Wetland Bog Forest Soil Peatland Marine Mangrove Sediment Soil Sediment (Intertidal) Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Surface Soil Agricultural Soil Grasslands Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Fen Palsa Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Palsa Avena Fatua Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
F14TC_1002882515 | 3300000559 | Soil | MLFERNMVNPTSLLSGGRPTARKANGMRGNGTLEK |
Ga0062386_1016964321 | 3300004152 | Bog Forest Soil | LLLERNMVNPTSLLSGGRPTARKVDGMRGNGTLEKANAAL* |
Ga0073909_106013542 | 3300005526 | Surface Soil | LFERNMVNPTSFLLGGRLTARKADKMWGNGTLEKANAVL* |
Ga0070664_1017285842 | 3300005564 | Corn Rhizosphere | MVNPTSLLFGGRPTARDAHEMRGNGTLEKANAAL* |
Ga0068857_1002022232 | 3300005577 | Corn Rhizosphere | MVNPTSLLLGGRPTVRKVDEMRGNGTLEKANAAL* |
Ga0068857_1005011451 | 3300005577 | Corn Rhizosphere | MVNLTSFLLRGRLTARKADKMWGNGTLEKANAVL* |
Ga0068857_1011906272 | 3300005577 | Corn Rhizosphere | MVNPTSLLFGGRPTARDAHEMRGNGTLEKANAVL* |
Ga0068854_1014647623 | 3300005578 | Corn Rhizosphere | MVNPTSLLFGGRPTARKAGGVRGNGTLEKANAVL* |
Ga0070761_102502911 | 3300005591 | Soil | MVNPTSLPLGGKPTARKADGMRGNGTLEKANAAL* |
Ga0068852_1023943431 | 3300005616 | Corn Rhizosphere | MVNPTSLLFGGRPTARDADEMQGNGTLEKANAGL* |
Ga0068859_1009743752 | 3300005617 | Switchgrass Rhizosphere | MVNPTSFLLGGRLTARKADKMWGNGTLEKANAVL* |
Ga0068859_1015706802 | 3300005617 | Switchgrass Rhizosphere | MVNPTSLLFGGRPTARDAHEVRGNGTLEKANAVL* |
Ga0066905_1005254932 | 3300005713 | Tropical Forest Soil | MVNPTSLLSGGRPTARKANGMRGNGTLEKAKAAL* |
Ga0068866_113551952 | 3300005718 | Miscanthus Rhizosphere | MVNPTSLLFGGRPTARKVDGMRGSGTLEKANAVL* |
Ga0068861_1024807932 | 3300005719 | Switchgrass Rhizosphere | LFERNMVNLTSFLLRGRLTARKADKMWGNGTLEKANAVL* |
Ga0074478_18551311 | 3300005827 | Sediment (Intertidal) | HPSLFERNLVNPTSLLFGGRPTARKVDGMRGNGTLEKANAVL* |
Ga0068851_107444302 | 3300005834 | Corn Rhizosphere | MVNPTSLLFGGRPTARDADEMQGNGTLEKANAVL* |
Ga0070715_107009591 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | LFERNMVNPTSFLFGGRLTARKADKVWGNGTLEKAKAVL* |
Ga0068871_1005464692 | 3300006358 | Miscanthus Rhizosphere | MVNPTSLLFGGRPTARDAHEMRGNGTLEKANAIL* |
Ga0075428_1003448933 | 3300006844 | Populus Rhizosphere | MVNPTSLLVGGRPTARKADEVRGNGTLEKAKAVL* |
Ga0075421_1024207271 | 3300006845 | Populus Rhizosphere | MVNPTSLLLGGRPTARKVDGVRGNGTLEKANAVL* |
Ga0079215_102314082 | 3300006894 | Agricultural Soil | MVNPTSLLFIGRPTARKVDGMRGNGTLEKANAVL* |
Ga0075424_1022592751 | 3300006904 | Populus Rhizosphere | LFERNMVNPTSFLFGGRLTARKADKMWGNGTLEKANAAL* |
Ga0075419_103330423 | 3300006969 | Populus Rhizosphere | LFERNMVNPTSLLVGGRPTARKADEVRGNGTLEKAKAVL* |
Ga0075419_107444491 | 3300006969 | Populus Rhizosphere | MVNPTSLLFGGRPTARKVDGMRGNGTLEKANAVL* |
Ga0075419_109328951 | 3300006969 | Populus Rhizosphere | MINPSSLLFGGKQTARKAHGMRSNGTLEKAKAIL* |
Ga0105095_102518002 | 3300009053 | Freshwater Sediment | MVNPPSLLLGGRPTARKADGMGGNGTLEQAKAAL* |
Ga0099830_112092052 | 3300009088 | Vadose Zone Soil | WNMVNPTSFLFGGRLTARKADKMWGNGTLEKANAVL* |
Ga0105247_109767172 | 3300009101 | Switchgrass Rhizosphere | THHALVERNMVNLTSFLLRGRLTARKADKMWGNGTLEKANAVL* |
Ga0105247_112619131 | 3300009101 | Switchgrass Rhizosphere | MVNPISLLLGGRPTARKADGMRGNGTLEKANAAL* |
Ga0115026_103161142 | 3300009111 | Wetland | LLERNMVNPPSLLLGGRPTARQADGMGGNGTLEQAKAAL* |
Ga0066709_1005626781 | 3300009137 | Grasslands Soil | MVNPTSLLLGGRPTARKADEMRGNGTLEKANAAL* |
Ga0105243_112267571 | 3300009148 | Miscanthus Rhizosphere | MVNPISLLLGGRPTARKADGMRGNGTLEKANAVL* |
Ga0105243_114950621 | 3300009148 | Miscanthus Rhizosphere | MVNPTSLLSGGRPTARDAHEMRGNGTLEKANAVQ* |
Ga0111538_109379362 | 3300009156 | Populus Rhizosphere | MVNPTSLLFGGRPTAREAHEMRGNGTLAKANAVL* |
Ga0075423_117153571 | 3300009162 | Populus Rhizosphere | MVNPTSLLFGGRPTARDAREMRGNGTLEKANAVL* |
Ga0118657_102995411 | 3300009506 | Mangrove Sediment | MVNPASLLLGGRPTARKADGMRGNGTLEKANAAR* |
Ga0116107_11405221 | 3300009548 | Peatland | MVNPTSLLLGGRPTARKVDGMRGNGTLEKANAAR* |
Ga0105238_102935922 | 3300009551 | Corn Rhizosphere | MVNPTSLLAGGRPTARKADEVRGNGTLKKAKVIL* |
Ga0105249_110813081 | 3300009553 | Switchgrass Rhizosphere | LFERNIVNPTSFLLGGRLTARKADKMWGNGTLEKANAAL* |
Ga0116105_10699131 | 3300009624 | Peatland | MVNPPSLLLGGKPTVRKADGMRGNGMLEKANAAL* |
Ga0105252_103902262 | 3300009678 | Soil | MVNPTSLLLGGRPTARKADEMRGNGTLEKANAVL* |
Ga0126382_106387532 | 3300010047 | Tropical Forest Soil | MVNPSSLLFGGKPTARKAHGMRGNGTLEKAKAIL* |
Ga0134071_105327311 | 3300010336 | Grasslands Soil | MVNPTSLLFGGRPTVRKVDEMRGNGTLEKANAVL* |
Ga0126376_115769561 | 3300010359 | Tropical Forest Soil | MVNPTSLLSGGRPTARKAHGMRGNGTLEKAKAVL* |
Ga0126376_123611671 | 3300010359 | Tropical Forest Soil | LVNPTSLLLGGRPTARKADGMRGNGTLEKANAAL* |
Ga0126377_108539071 | 3300010362 | Tropical Forest Soil | MVNPSSLLFGGRPTARKAHGMRGNGTLEKAKAVL* |
Ga0126377_122456681 | 3300010362 | Tropical Forest Soil | MVNPASFLLGGRLTARNADKMWGNGTLEKANAVL* |
Ga0105239_122157851 | 3300010375 | Corn Rhizosphere | MVNPTSLLFGGRPTARKVHEVRGNGTLEKANAVL* |
Ga0118731_1123757493 | 3300010392 | Marine | MVNPTSLLFGGRPTVRKVDEMKGNGTLEKANAVL* |
Ga0134127_1000195511 | 3300010399 | Terrestrial Soil | MANPASLLLGGRPTARKADEMWGNGTLEKANAAL* |
Ga0134127_111651322 | 3300010399 | Terrestrial Soil | MVNPTSPLFGGRPTARDAHEMRGNGTLEKANAVL* |
Ga0134122_119449141 | 3300010400 | Terrestrial Soil | MVNPTSLLFGGRPTARKVDGMQGNGTLEKANAVL* |
Ga0134121_104644332 | 3300010401 | Terrestrial Soil | MVNPTSLLFGGRPTARKAHGMRGNGTLEKAKAVL* |
Ga0150983_106269691 | 3300011120 | Forest Soil | MVNPTSLLFGGRPTARKADGVRGNGTLEKANAAW* |
Ga0150983_109258591 | 3300011120 | Forest Soil | MVNPTSLLLGGRPTARKAGGMRGNGTLEKANAAL* |
Ga0150983_157554341 | 3300011120 | Forest Soil | MVNPPSLLLGGRPTVRKADGMRGNGTLEEANAAR* |
Ga0137326_10799413 | 3300011417 | Soil | MVNPTSLLFGGRPTARKVDGMRGNGTLEKAKAVL* |
Ga0137433_10026704 | 3300011440 | Soil | LVNPTSLLLGGRPTARKVDEMRGNGTLEKANAAL* |
Ga0137433_10111561 | 3300011440 | Soil | LVNPTSLLFGGRPTARKADEMRGNGTLEKANAAL* |
Ga0137433_10145392 | 3300011440 | Soil | MANPASLLLGGRPTARKADEMRGNGTLEKANVAL* |
Ga0137328_10224192 | 3300012113 | Soil | LVNPTSLLLGGRPTARKVDGMRGNGTLEKANAAL* |
Ga0137350_10885641 | 3300012166 | Soil | SLFEWNMVNPASLLFGGRPTARKADGVRGNGTLEKANAVL* |
Ga0137362_110822952 | 3300012205 | Vadose Zone Soil | MVNPTSFLFGGRPTARKADKVWGNGTLEKANAVL* |
Ga0137380_117504562 | 3300012206 | Vadose Zone Soil | HHALFERNMVNPTSFLLGGRLTARKADKMWGNGTLEKANAVL* |
Ga0150985_1206848412 | 3300012212 | Avena Fatua Rhizosphere | MVNPTSLLFGGRPTARKVHEMRGNGSLEKANAVL* |
Ga0137372_104707162 | 3300012350 | Vadose Zone Soil | MVNPTSLLFGGRPTARKADEMRGNGTLEKANAAL* |
Ga0137361_104946071 | 3300012362 | Vadose Zone Soil | MVNPTSLLSGGRPTARKADGMRGNGTLEKAKATL* |
Ga0137358_106237363 | 3300012582 | Vadose Zone Soil | MVNPTSLLSGGRPTARNANGMRGNGTLEKANAAL* |
Ga0137341_10511781 | 3300012676 | Soil | MVNPTSLLLGGRPNARKSDGMRGNGTLEKANAAL* |
Ga0157304_10241501 | 3300012882 | Soil | MVNPTSLLFGGRPTARDAHEMRGNGTPEKANAVL* |
Ga0157300_10256041 | 3300012884 | Soil | MVNPTSLLLGGRPTARDAHEMRGNGSLEKANAVL* |
Ga0157305_102826461 | 3300012891 | Soil | TFRKKFEWNMVNPTSLLFGRRPTARKVDGMRGNGTLEKAKAVL* |
Ga0157296_103258581 | 3300012905 | Soil | AKSSPLFERNMVNPTSLLFGGRPTARKAHGMRGNGTLEKAKAVL* |
Ga0157295_102148062 | 3300012906 | Soil | MVNPTSLLFGGRPTARKVHEMWGNGTLEKANAVL* |
Ga0157308_102759691 | 3300012910 | Soil | MVNPTSLLFGGRPTTRNVDGMRGNGTLEKANAVL* |
Ga0157297_102904341 | 3300012914 | Soil | MVNPTSLLFGGRPTARKAHEMRGNGTLEKANAVL* |
Ga0137394_113964082 | 3300012922 | Vadose Zone Soil | MANPTSLLLGGRPTARKADEMRGNGTLEKANAAL* |
Ga0137359_103308952 | 3300012923 | Vadose Zone Soil | MANPTSLLSGGRPTARNADGMRGNGTLEKAKAVL* |
Ga0137359_106090582 | 3300012923 | Vadose Zone Soil | MVNPTSFLLRGRLTARKADKMWGNGTLEKANAVL* |
Ga0137404_119482151 | 3300012929 | Vadose Zone Soil | MVNPTSLLSGGRPTARKADGVRVNGTLEKANAAL* |
Ga0126375_103150812 | 3300012948 | Tropical Forest Soil | MVNPTSLLLGGRPTARKAHEMRGNGTLEKANAAL* |
Ga0126375_115940571 | 3300012948 | Tropical Forest Soil | MVNPTSFLFEGRLTARKADKMGGNGTLEKANAVL* |
Ga0164304_118044151 | 3300012986 | Soil | MVNPTSLLLGGRPTARKVDGMRGNGTLEKANAVL* |
Ga0157371_110000741 | 3300013102 | Corn Rhizosphere | MVNPTSLLFGGRPTARDAHEMGGNGTLEKANAVL* |
Ga0157370_113513041 | 3300013104 | Corn Rhizosphere | ERNMVNPTSLLFGGRPTARDAHEMRGNGTLEKANAVL* |
Ga0163162_108689321 | 3300013306 | Switchgrass Rhizosphere | MVNPTSLLFGGRPTARKAHGMRGNGTLEKAKAIL* |
Ga0163162_114314901 | 3300013306 | Switchgrass Rhizosphere | MVNPTSLLSGGRPTARKAHGMRGNGTLEKAKAAL* |
Ga0134075_102729891 | 3300014154 | Grasslands Soil | MVNPTSLLFGGRPTARKADEMRGNGTLEKANAVL* |
Ga0157380_114530402 | 3300014326 | Switchgrass Rhizosphere | MVNPTSLLFGGRPTARKAQGMRGNGTLEKANAVL* |
Ga0182018_105525552 | 3300014489 | Palsa | MVNPTSLPLGGKPTARKADGMRGNGTLEKAKAAL* |
Ga0182027_116627081 | 3300014839 | Fen | MVNPTSLLFGGRPTARKVDGMWGNGTLEKANAAR* |
Ga0180080_10462171 | 3300014870 | Soil | LYERNMVNPTSLLFGGRPTARKVDGMRGNGTLEKANAVL* |
Ga0180069_11660181 | 3300014882 | Soil | NLVNPTSLLLGGRPTARKVDGMRGNGTLEKANAAL* |
Ga0173478_102291691 | 3300015201 | Soil | MVNPTSFLLRGRLTARKAEKMWGNGTLEKANAVL* |
Ga0173478_104649482 | 3300015201 | Soil | MVNPTSLPFGGRPTARKAQGMRGNGTLEKAKAAL* |
Ga0137418_105391622 | 3300015241 | Vadose Zone Soil | NMVNPTSFLLGGRLTARKADKMWGNGTLEKANAVL* |
Ga0132256_1038855511 | 3300015372 | Arabidopsis Rhizosphere | MVNPTSLLSGGRPTERKVYEMRGNGTLEKANAVL* |
Ga0247679_10872571 | 3300024251 | Soil | PLLERNMVNPPSLLFEGKPTARKADGMRGNGTPEKANAAR |
Ga0207701_112014782 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | NMVNPTSLLFGGRPTARKAHGMRGNGTLEKANAVL |
Ga0207704_106835022 | 3300025938 | Miscanthus Rhizosphere | RNMVNPTSLLGGRPTARKVDGMRGNGTLEKANAVL |
Ga0209240_10326081 | 3300026304 | Grasslands Soil | ALFERNMVNPTSFLLPGGRLTARKADKVLGNGTLEKANAVL |
Ga0209293_103648752 | 3300027877 | Wetland | NMVNPPSLLLGGRPTARQADGMGGNGTLEQAKAAL |
Ga0302228_105528281 | 3300028808 | Palsa | NMVNPTSLLLGGKPTARKADGMRGNGTLEKANAAL |
Ga0302306_101282872 | 3300030043 | Palsa | HPSLFERNMVNPTSLLLGGKPTARKADGMRGNGTLEKANAAL |
Ga0310686_1134765651 | 3300031708 | Soil | NHSSLFERNMVNPTSLLLEGRPTARKADGMRGNGTLEKANAVL |
Ga0316620_112358721 | 3300033480 | Soil | ERNMVNPPSLLLGGRPTARQADGMGGNGTLEQAKAAL |
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