NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F092771

Metagenome Family F092771

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F092771
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 36 residues
Representative Sequence MVNPTSLLFGGRPTARKADEMRGNGTLEKANAVL
Number of Associated Samples 89
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 67.92 %
% of genes near scaffold ends (potentially truncated) 20.56 %
% of genes from short scaffolds (< 2000 bps) 92.52 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (59.813 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(10.280 % of family members)
Environment Ontology (ENVO) Unclassified
(44.860 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(44.860 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.
1F14TC_1002882515
2Ga0062386_1016964321
3Ga0073909_106013542
4Ga0070664_1017285842
5Ga0068857_1002022232
6Ga0068857_1005011451
7Ga0068857_1011906272
8Ga0068854_1014647623
9Ga0070761_102502911
10Ga0068852_1023943431
11Ga0068859_1009743752
12Ga0068859_1015706802
13Ga0066905_1005254932
14Ga0068866_113551952
15Ga0068861_1024807932
16Ga0074478_18551311
17Ga0068851_107444302
18Ga0070715_107009591
19Ga0068871_1005464692
20Ga0075428_1003448933
21Ga0075421_1024207271
22Ga0079215_102314082
23Ga0075424_1022592751
24Ga0075419_103330423
25Ga0075419_107444491
26Ga0075419_109328951
27Ga0105095_102518002
28Ga0099830_112092052
29Ga0105247_109767172
30Ga0105247_112619131
31Ga0115026_103161142
32Ga0066709_1005626781
33Ga0105243_112267571
34Ga0105243_114950621
35Ga0111538_109379362
36Ga0075423_117153571
37Ga0118657_102995411
38Ga0116107_11405221
39Ga0105238_102935922
40Ga0105249_110813081
41Ga0116105_10699131
42Ga0105252_103902262
43Ga0126382_106387532
44Ga0134071_105327311
45Ga0126376_115769561
46Ga0126376_123611671
47Ga0126377_108539071
48Ga0126377_122456681
49Ga0105239_122157851
50Ga0118731_1123757493
51Ga0134127_1000195511
52Ga0134127_111651322
53Ga0134122_119449141
54Ga0134121_104644332
55Ga0150983_106269691
56Ga0150983_109258591
57Ga0150983_157554341
58Ga0137326_10799413
59Ga0137433_10026704
60Ga0137433_10111561
61Ga0137433_10145392
62Ga0137328_10224192
63Ga0137350_10885641
64Ga0137362_110822952
65Ga0137380_117504562
66Ga0150985_1206848412
67Ga0137372_104707162
68Ga0137361_104946071
69Ga0137358_106237363
70Ga0137341_10511781
71Ga0157304_10241501
72Ga0157300_10256041
73Ga0157305_102826461
74Ga0157296_103258581
75Ga0157295_102148062
76Ga0157308_102759691
77Ga0157297_102904341
78Ga0137394_113964082
79Ga0137359_103308952
80Ga0137359_106090582
81Ga0137404_119482151
82Ga0126375_103150812
83Ga0126375_115940571
84Ga0164304_118044151
85Ga0157371_110000741
86Ga0157370_113513041
87Ga0163162_108689321
88Ga0163162_114314901
89Ga0134075_102729891
90Ga0157380_114530402
91Ga0182018_105525552
92Ga0182027_116627081
93Ga0180080_10462171
94Ga0180069_11660181
95Ga0173478_102291691
96Ga0173478_104649482
97Ga0137418_105391622
98Ga0132256_1038855511
99Ga0247679_10872571
100Ga0207701_112014782
101Ga0207704_106835022
102Ga0209240_10326081
103Ga0209293_103648752
104Ga0302228_105528281
105Ga0302306_101282872
106Ga0310686_1134765651
107Ga0316620_112358721
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 22.58%    β-sheet: 0.00%    Coil/Unstructured: 77.42%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

51015202530MVNPTSLLFGGRPTARKADEMRGNGTLEKANAVLSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.18
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains




 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
40.2%59.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Wetland
Bog Forest Soil
Peatland
Marine
Mangrove Sediment
Soil
Sediment (Intertidal)
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Surface Soil
Agricultural Soil
Grasslands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Soil
Fen
Palsa
Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Palsa
Avena Fatua Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
9.3%10.3%10.3%3.7%6.5%2.8%5.6%2.8%7.5%2.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F14TC_10028825153300000559SoilMLFERNMVNPTSLLSGGRPTARKANGMRGNGTLEK
Ga0062386_10169643213300004152Bog Forest SoilLLLERNMVNPTSLLSGGRPTARKVDGMRGNGTLEKANAAL*
Ga0073909_1060135423300005526Surface SoilLFERNMVNPTSFLLGGRLTARKADKMWGNGTLEKANAVL*
Ga0070664_10172858423300005564Corn RhizosphereMVNPTSLLFGGRPTARDAHEMRGNGTLEKANAAL*
Ga0068857_10020222323300005577Corn RhizosphereMVNPTSLLLGGRPTVRKVDEMRGNGTLEKANAAL*
Ga0068857_10050114513300005577Corn RhizosphereMVNLTSFLLRGRLTARKADKMWGNGTLEKANAVL*
Ga0068857_10119062723300005577Corn RhizosphereMVNPTSLLFGGRPTARDAHEMRGNGTLEKANAVL*
Ga0068854_10146476233300005578Corn RhizosphereMVNPTSLLFGGRPTARKAGGVRGNGTLEKANAVL*
Ga0070761_1025029113300005591SoilMVNPTSLPLGGKPTARKADGMRGNGTLEKANAAL*
Ga0068852_10239434313300005616Corn RhizosphereMVNPTSLLFGGRPTARDADEMQGNGTLEKANAGL*
Ga0068859_10097437523300005617Switchgrass RhizosphereMVNPTSFLLGGRLTARKADKMWGNGTLEKANAVL*
Ga0068859_10157068023300005617Switchgrass RhizosphereMVNPTSLLFGGRPTARDAHEVRGNGTLEKANAVL*
Ga0066905_10052549323300005713Tropical Forest SoilMVNPTSLLSGGRPTARKANGMRGNGTLEKAKAAL*
Ga0068866_1135519523300005718Miscanthus RhizosphereMVNPTSLLFGGRPTARKVDGMRGSGTLEKANAVL*
Ga0068861_10248079323300005719Switchgrass RhizosphereLFERNMVNLTSFLLRGRLTARKADKMWGNGTLEKANAVL*
Ga0074478_185513113300005827Sediment (Intertidal)HPSLFERNLVNPTSLLFGGRPTARKVDGMRGNGTLEKANAVL*
Ga0068851_1074443023300005834Corn RhizosphereMVNPTSLLFGGRPTARDADEMQGNGTLEKANAVL*
Ga0070715_1070095913300006163Corn, Switchgrass And Miscanthus RhizosphereLFERNMVNPTSFLFGGRLTARKADKVWGNGTLEKAKAVL*
Ga0068871_10054646923300006358Miscanthus RhizosphereMVNPTSLLFGGRPTARDAHEMRGNGTLEKANAIL*
Ga0075428_10034489333300006844Populus RhizosphereMVNPTSLLVGGRPTARKADEVRGNGTLEKAKAVL*
Ga0075421_10242072713300006845Populus RhizosphereMVNPTSLLLGGRPTARKVDGVRGNGTLEKANAVL*
Ga0079215_1023140823300006894Agricultural SoilMVNPTSLLFIGRPTARKVDGMRGNGTLEKANAVL*
Ga0075424_10225927513300006904Populus RhizosphereLFERNMVNPTSFLFGGRLTARKADKMWGNGTLEKANAAL*
Ga0075419_1033304233300006969Populus RhizosphereLFERNMVNPTSLLVGGRPTARKADEVRGNGTLEKAKAVL*
Ga0075419_1074444913300006969Populus RhizosphereMVNPTSLLFGGRPTARKVDGMRGNGTLEKANAVL*
Ga0075419_1093289513300006969Populus RhizosphereMINPSSLLFGGKQTARKAHGMRSNGTLEKAKAIL*
Ga0105095_1025180023300009053Freshwater SedimentMVNPPSLLLGGRPTARKADGMGGNGTLEQAKAAL*
Ga0099830_1120920523300009088Vadose Zone SoilWNMVNPTSFLFGGRLTARKADKMWGNGTLEKANAVL*
Ga0105247_1097671723300009101Switchgrass RhizosphereTHHALVERNMVNLTSFLLRGRLTARKADKMWGNGTLEKANAVL*
Ga0105247_1126191313300009101Switchgrass RhizosphereMVNPISLLLGGRPTARKADGMRGNGTLEKANAAL*
Ga0115026_1031611423300009111WetlandLLERNMVNPPSLLLGGRPTARQADGMGGNGTLEQAKAAL*
Ga0066709_10056267813300009137Grasslands SoilMVNPTSLLLGGRPTARKADEMRGNGTLEKANAAL*
Ga0105243_1122675713300009148Miscanthus RhizosphereMVNPISLLLGGRPTARKADGMRGNGTLEKANAVL*
Ga0105243_1149506213300009148Miscanthus RhizosphereMVNPTSLLSGGRPTARDAHEMRGNGTLEKANAVQ*
Ga0111538_1093793623300009156Populus RhizosphereMVNPTSLLFGGRPTAREAHEMRGNGTLAKANAVL*
Ga0075423_1171535713300009162Populus RhizosphereMVNPTSLLFGGRPTARDAREMRGNGTLEKANAVL*
Ga0118657_1029954113300009506Mangrove SedimentMVNPASLLLGGRPTARKADGMRGNGTLEKANAAR*
Ga0116107_114052213300009548PeatlandMVNPTSLLLGGRPTARKVDGMRGNGTLEKANAAR*
Ga0105238_1029359223300009551Corn RhizosphereMVNPTSLLAGGRPTARKADEVRGNGTLKKAKVIL*
Ga0105249_1108130813300009553Switchgrass RhizosphereLFERNIVNPTSFLLGGRLTARKADKMWGNGTLEKANAAL*
Ga0116105_106991313300009624PeatlandMVNPPSLLLGGKPTVRKADGMRGNGMLEKANAAL*
Ga0105252_1039022623300009678SoilMVNPTSLLLGGRPTARKADEMRGNGTLEKANAVL*
Ga0126382_1063875323300010047Tropical Forest SoilMVNPSSLLFGGKPTARKAHGMRGNGTLEKAKAIL*
Ga0134071_1053273113300010336Grasslands SoilMVNPTSLLFGGRPTVRKVDEMRGNGTLEKANAVL*
Ga0126376_1157695613300010359Tropical Forest SoilMVNPTSLLSGGRPTARKAHGMRGNGTLEKAKAVL*
Ga0126376_1236116713300010359Tropical Forest SoilLVNPTSLLLGGRPTARKADGMRGNGTLEKANAAL*
Ga0126377_1085390713300010362Tropical Forest SoilMVNPSSLLFGGRPTARKAHGMRGNGTLEKAKAVL*
Ga0126377_1224566813300010362Tropical Forest SoilMVNPASFLLGGRLTARNADKMWGNGTLEKANAVL*
Ga0105239_1221578513300010375Corn RhizosphereMVNPTSLLFGGRPTARKVHEVRGNGTLEKANAVL*
Ga0118731_11237574933300010392MarineMVNPTSLLFGGRPTVRKVDEMKGNGTLEKANAVL*
Ga0134127_10001955113300010399Terrestrial SoilMANPASLLLGGRPTARKADEMWGNGTLEKANAAL*
Ga0134127_1116513223300010399Terrestrial SoilMVNPTSPLFGGRPTARDAHEMRGNGTLEKANAVL*
Ga0134122_1194491413300010400Terrestrial SoilMVNPTSLLFGGRPTARKVDGMQGNGTLEKANAVL*
Ga0134121_1046443323300010401Terrestrial SoilMVNPTSLLFGGRPTARKAHGMRGNGTLEKAKAVL*
Ga0150983_1062696913300011120Forest SoilMVNPTSLLFGGRPTARKADGVRGNGTLEKANAAW*
Ga0150983_1092585913300011120Forest SoilMVNPTSLLLGGRPTARKAGGMRGNGTLEKANAAL*
Ga0150983_1575543413300011120Forest SoilMVNPPSLLLGGRPTVRKADGMRGNGTLEEANAAR*
Ga0137326_107994133300011417SoilMVNPTSLLFGGRPTARKVDGMRGNGTLEKAKAVL*
Ga0137433_100267043300011440SoilLVNPTSLLLGGRPTARKVDEMRGNGTLEKANAAL*
Ga0137433_101115613300011440SoilLVNPTSLLFGGRPTARKADEMRGNGTLEKANAAL*
Ga0137433_101453923300011440SoilMANPASLLLGGRPTARKADEMRGNGTLEKANVAL*
Ga0137328_102241923300012113SoilLVNPTSLLLGGRPTARKVDGMRGNGTLEKANAAL*
Ga0137350_108856413300012166SoilSLFEWNMVNPASLLFGGRPTARKADGVRGNGTLEKANAVL*
Ga0137362_1108229523300012205Vadose Zone SoilMVNPTSFLFGGRPTARKADKVWGNGTLEKANAVL*
Ga0137380_1175045623300012206Vadose Zone SoilHHALFERNMVNPTSFLLGGRLTARKADKMWGNGTLEKANAVL*
Ga0150985_12068484123300012212Avena Fatua RhizosphereMVNPTSLLFGGRPTARKVHEMRGNGSLEKANAVL*
Ga0137372_1047071623300012350Vadose Zone SoilMVNPTSLLFGGRPTARKADEMRGNGTLEKANAAL*
Ga0137361_1049460713300012362Vadose Zone SoilMVNPTSLLSGGRPTARKADGMRGNGTLEKAKATL*
Ga0137358_1062373633300012582Vadose Zone SoilMVNPTSLLSGGRPTARNANGMRGNGTLEKANAAL*
Ga0137341_105117813300012676SoilMVNPTSLLLGGRPNARKSDGMRGNGTLEKANAAL*
Ga0157304_102415013300012882SoilMVNPTSLLFGGRPTARDAHEMRGNGTPEKANAVL*
Ga0157300_102560413300012884SoilMVNPTSLLLGGRPTARDAHEMRGNGSLEKANAVL*
Ga0157305_1028264613300012891SoilTFRKKFEWNMVNPTSLLFGRRPTARKVDGMRGNGTLEKAKAVL*
Ga0157296_1032585813300012905SoilAKSSPLFERNMVNPTSLLFGGRPTARKAHGMRGNGTLEKAKAVL*
Ga0157295_1021480623300012906SoilMVNPTSLLFGGRPTARKVHEMWGNGTLEKANAVL*
Ga0157308_1027596913300012910SoilMVNPTSLLFGGRPTTRNVDGMRGNGTLEKANAVL*
Ga0157297_1029043413300012914SoilMVNPTSLLFGGRPTARKAHEMRGNGTLEKANAVL*
Ga0137394_1139640823300012922Vadose Zone SoilMANPTSLLLGGRPTARKADEMRGNGTLEKANAAL*
Ga0137359_1033089523300012923Vadose Zone SoilMANPTSLLSGGRPTARNADGMRGNGTLEKAKAVL*
Ga0137359_1060905823300012923Vadose Zone SoilMVNPTSFLLRGRLTARKADKMWGNGTLEKANAVL*
Ga0137404_1194821513300012929Vadose Zone SoilMVNPTSLLSGGRPTARKADGVRVNGTLEKANAAL*
Ga0126375_1031508123300012948Tropical Forest SoilMVNPTSLLLGGRPTARKAHEMRGNGTLEKANAAL*
Ga0126375_1159405713300012948Tropical Forest SoilMVNPTSFLFEGRLTARKADKMGGNGTLEKANAVL*
Ga0164304_1180441513300012986SoilMVNPTSLLLGGRPTARKVDGMRGNGTLEKANAVL*
Ga0157371_1100007413300013102Corn RhizosphereMVNPTSLLFGGRPTARDAHEMGGNGTLEKANAVL*
Ga0157370_1135130413300013104Corn RhizosphereERNMVNPTSLLFGGRPTARDAHEMRGNGTLEKANAVL*
Ga0163162_1086893213300013306Switchgrass RhizosphereMVNPTSLLFGGRPTARKAHGMRGNGTLEKAKAIL*
Ga0163162_1143149013300013306Switchgrass RhizosphereMVNPTSLLSGGRPTARKAHGMRGNGTLEKAKAAL*
Ga0134075_1027298913300014154Grasslands SoilMVNPTSLLFGGRPTARKADEMRGNGTLEKANAVL*
Ga0157380_1145304023300014326Switchgrass RhizosphereMVNPTSLLFGGRPTARKAQGMRGNGTLEKANAVL*
Ga0182018_1055255523300014489PalsaMVNPTSLPLGGKPTARKADGMRGNGTLEKAKAAL*
Ga0182027_1166270813300014839FenMVNPTSLLFGGRPTARKVDGMWGNGTLEKANAAR*
Ga0180080_104621713300014870SoilLYERNMVNPTSLLFGGRPTARKVDGMRGNGTLEKANAVL*
Ga0180069_116601813300014882SoilNLVNPTSLLLGGRPTARKVDGMRGNGTLEKANAAL*
Ga0173478_1022916913300015201SoilMVNPTSFLLRGRLTARKAEKMWGNGTLEKANAVL*
Ga0173478_1046494823300015201SoilMVNPTSLPFGGRPTARKAQGMRGNGTLEKAKAAL*
Ga0137418_1053916223300015241Vadose Zone SoilNMVNPTSFLLGGRLTARKADKMWGNGTLEKANAVL*
Ga0132256_10388555113300015372Arabidopsis RhizosphereMVNPTSLLSGGRPTERKVYEMRGNGTLEKANAVL*
Ga0247679_108725713300024251SoilPLLERNMVNPPSLLFEGKPTARKADGMRGNGTPEKANAAR
Ga0207701_1120147823300025930Corn, Switchgrass And Miscanthus RhizosphereNMVNPTSLLFGGRPTARKAHGMRGNGTLEKANAVL
Ga0207704_1068350223300025938Miscanthus RhizosphereRNMVNPTSLLGGRPTARKVDGMRGNGTLEKANAVL
Ga0209240_103260813300026304Grasslands SoilALFERNMVNPTSFLLPGGRLTARKADKVLGNGTLEKANAVL
Ga0209293_1036487523300027877WetlandNMVNPPSLLLGGRPTARQADGMGGNGTLEQAKAAL
Ga0302228_1055282813300028808PalsaNMVNPTSLLLGGKPTARKADGMRGNGTLEKANAAL
Ga0302306_1012828723300030043PalsaHPSLFERNMVNPTSLLLGGKPTARKADGMRGNGTLEKANAAL
Ga0310686_11347656513300031708SoilNHSSLFERNMVNPTSLLLEGRPTARKADGMRGNGTLEKANAVL
Ga0316620_1123587213300033480SoilERNMVNPPSLLLGGRPTARQADGMGGNGTLEQAKAAL


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.