NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F092770

Metagenome / Metatranscriptome Family F092770

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092770
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 43 residues
Representative Sequence MSERARRRQLGRGLAALFGEAEGDAAADPATQRQVPIELIRPG
Number of Associated Samples 88
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 64.49 %
% of genes near scaffold ends (potentially truncated) 99.07 %
% of genes from short scaffolds (< 2000 bps) 95.33 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (58.879 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(56.075 % of family members)
Environment Ontology (ENVO) Unclassified
(60.748 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(51.402 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 26.76%    β-sheet: 0.00%    Coil/Unstructured: 73.24%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF13614AAA_31 74.77
PF01656CbiA 11.21
PF02527GidB 8.41
PF13932GIDA_C 4.67

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG035716S rRNA G527 N7-methylase RsmG (former glucose-inhibited division protein B)Translation, ribosomal structure and biogenesis [J] 8.41


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A58.88 %
All OrganismsrootAll Organisms41.12 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001639|JGI20237J16298_101465Not Available558Open in IMG/M
3300003505|JGIcombinedJ51221_10092928All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1194Open in IMG/M
3300004080|Ga0062385_10655396All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria671Open in IMG/M
3300004080|Ga0062385_11027193All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria555Open in IMG/M
3300005435|Ga0070714_100294225All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae1512Open in IMG/M
3300005764|Ga0066903_102343797All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1032Open in IMG/M
3300005764|Ga0066903_103706233All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria822Open in IMG/M
3300006163|Ga0070715_10824214All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria565Open in IMG/M
3300006175|Ga0070712_101420902Not Available605Open in IMG/M
3300006755|Ga0079222_11458413All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales638Open in IMG/M
3300006796|Ga0066665_11148410All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria592Open in IMG/M
3300006797|Ga0066659_11205407All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria632Open in IMG/M
3300006806|Ga0079220_11581140All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria567Open in IMG/M
3300010339|Ga0074046_10428284Not Available796Open in IMG/M
3300010376|Ga0126381_101452277Not Available991Open in IMG/M
3300010398|Ga0126383_11804053Not Available700Open in IMG/M
3300012202|Ga0137363_10770760All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Erythrobacter → Erythrobacter litoralis815Open in IMG/M
3300015242|Ga0137412_11180752Not Available538Open in IMG/M
3300016294|Ga0182041_10887257Not Available801Open in IMG/M
3300016294|Ga0182041_11231054Not Available683Open in IMG/M
3300016294|Ga0182041_11520493Not Available617Open in IMG/M
3300016357|Ga0182032_10326931All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae1219Open in IMG/M
3300016357|Ga0182032_10536467All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria966Open in IMG/M
3300016371|Ga0182034_10194452All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1563Open in IMG/M
3300016371|Ga0182034_11394504Not Available612Open in IMG/M
3300016371|Ga0182034_11662814Not Available561Open in IMG/M
3300016422|Ga0182039_10405624All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1158Open in IMG/M
3300016445|Ga0182038_11452169Not Available615Open in IMG/M
3300020579|Ga0210407_10559596Not Available892Open in IMG/M
3300021168|Ga0210406_10473064Not Available994Open in IMG/M
3300021168|Ga0210406_11032725Not Available610Open in IMG/M
3300021178|Ga0210408_11307694Not Available549Open in IMG/M
3300021372|Ga0213877_10357299Not Available505Open in IMG/M
3300021401|Ga0210393_11335590Not Available574Open in IMG/M
3300021407|Ga0210383_11134917Not Available659Open in IMG/M
3300021420|Ga0210394_11769177Not Available516Open in IMG/M
3300021476|Ga0187846_10265306Not Available712Open in IMG/M
3300021479|Ga0210410_10929590Not Available757Open in IMG/M
3300021560|Ga0126371_10232375All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1952Open in IMG/M
3300021560|Ga0126371_12952363Not Available576Open in IMG/M
3300022709|Ga0222756_1053865Not Available609Open in IMG/M
3300022717|Ga0242661_1037733All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria860Open in IMG/M
3300026369|Ga0257152_1022778Not Available669Open in IMG/M
3300027174|Ga0207948_1044177Not Available538Open in IMG/M
3300027767|Ga0209655_10093867Not Available998Open in IMG/M
3300027903|Ga0209488_10729637Not Available708Open in IMG/M
3300031231|Ga0170824_110657920All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria871Open in IMG/M
3300031543|Ga0318516_10099167All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae1645Open in IMG/M
3300031546|Ga0318538_10173967All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1144Open in IMG/M
3300031546|Ga0318538_10279626All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria898Open in IMG/M
3300031546|Ga0318538_10611680Not Available591Open in IMG/M
3300031561|Ga0318528_10655928Not Available562Open in IMG/M
3300031564|Ga0318573_10232794Not Available981Open in IMG/M
3300031564|Ga0318573_10378895Not Available760Open in IMG/M
3300031573|Ga0310915_10862405Not Available635Open in IMG/M
3300031573|Ga0310915_10955222Not Available599Open in IMG/M
3300031680|Ga0318574_10208362All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1124Open in IMG/M
3300031680|Ga0318574_10947523Not Available504Open in IMG/M
3300031681|Ga0318572_10096058All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1666Open in IMG/M
3300031713|Ga0318496_10373539Not Available788Open in IMG/M
3300031740|Ga0307468_100610639Not Available893Open in IMG/M
3300031744|Ga0306918_10347970All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae1149Open in IMG/M
3300031748|Ga0318492_10291220Not Available849Open in IMG/M
3300031751|Ga0318494_10295874Not Available933Open in IMG/M
3300031753|Ga0307477_10268234All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1181Open in IMG/M
3300031754|Ga0307475_10123071All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2044Open in IMG/M
3300031764|Ga0318535_10262974Not Available772Open in IMG/M
3300031765|Ga0318554_10728198Not Available556Open in IMG/M
3300031768|Ga0318509_10671892Not Available576Open in IMG/M
3300031769|Ga0318526_10455732Not Available522Open in IMG/M
3300031770|Ga0318521_10339052All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria889Open in IMG/M
3300031778|Ga0318498_10536800Not Available514Open in IMG/M
3300031779|Ga0318566_10031888All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2427Open in IMG/M
3300031779|Ga0318566_10659915Not Available508Open in IMG/M
3300031793|Ga0318548_10105769All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae1351Open in IMG/M
3300031794|Ga0318503_10095986All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria939Open in IMG/M
3300031795|Ga0318557_10350688Not Available678Open in IMG/M
3300031799|Ga0318565_10412726Not Available654Open in IMG/M
3300031819|Ga0318568_10138090All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae1484Open in IMG/M
3300031819|Ga0318568_10199381All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1234Open in IMG/M
3300031823|Ga0307478_10154270All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1824Open in IMG/M
3300031831|Ga0318564_10485235Not Available537Open in IMG/M
3300031833|Ga0310917_11022627Not Available553Open in IMG/M
3300031835|Ga0318517_10388388Not Available630Open in IMG/M
3300031859|Ga0318527_10062808All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1474Open in IMG/M
3300031879|Ga0306919_10012430All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae4875Open in IMG/M
3300031880|Ga0318544_10260556Not Available672Open in IMG/M
3300031896|Ga0318551_10141360All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1309Open in IMG/M
3300031941|Ga0310912_10161300All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae1698Open in IMG/M
3300031941|Ga0310912_10624288Not Available838Open in IMG/M
3300031942|Ga0310916_10400385All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae1168Open in IMG/M
3300031945|Ga0310913_11253109Not Available515Open in IMG/M
3300031954|Ga0306926_13006195Not Available503Open in IMG/M
3300031959|Ga0318530_10279426Not Available689Open in IMG/M
3300031981|Ga0318531_10162327Not Available1003Open in IMG/M
3300032035|Ga0310911_10049798All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2177Open in IMG/M
3300032043|Ga0318556_10042043All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2179Open in IMG/M
3300032043|Ga0318556_10317536Not Available814Open in IMG/M
3300032052|Ga0318506_10153275All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1008Open in IMG/M
3300032055|Ga0318575_10299007Not Available814Open in IMG/M
3300032066|Ga0318514_10544827Not Available618Open in IMG/M
3300032076|Ga0306924_11464598Not Available726Open in IMG/M
3300032094|Ga0318540_10287960Not Available793Open in IMG/M
3300032180|Ga0307471_100493874All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1371Open in IMG/M
3300032261|Ga0306920_102570622Not Available699Open in IMG/M
3300032261|Ga0306920_102950685Not Available643Open in IMG/M
3300033290|Ga0318519_10208263All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1118Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil56.07%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil14.95%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.67%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.74%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.80%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.80%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.80%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.87%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.87%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.87%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil0.93%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.93%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.93%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.93%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001639Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021372Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01EnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022709Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022717Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300026369Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-AEnvironmentalOpen in IMG/M
3300027174Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)EnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031794Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20237J16298_10146523300001639Forest SoilMSEGARHRPLGRGLAALFGETEGGASFDPASPRRVPI
JGIcombinedJ51221_1009292833300003505Forest SoilMSERARRRQLGRGLATLFGETESGSSADPAPQRRVPIELIRPGAFQ
Ga0062385_1065539623300004080Bog Forest SoilMSERTARRQLGRGLAALFGEADGGTFSDPELQRRVPIELIRPGVFQPRRR
Ga0062385_1102719323300004080Bog Forest SoilMSGRTARRQLGRGLAVLFGEGDGHTFADPVSQRRVPIELIRPGVFQPRRR
Ga0070714_10029422513300005435Agricultural SoilMSERARRRQLGRGLATLFGETERGSSTDPPPQRRVPIELIRPGAFQ
Ga0066903_10234379723300005764Tropical Forest SoilMSERTRRRQLGRGLAALFGEADGALAMDPAPQRRVPIELIRP
Ga0066903_10370623323300005764Tropical Forest SoilMSERTRRRQLGRGLAALFGETDGASPVDLPPQRRVPIELIRP
Ga0070715_1082421423300006163Corn, Switchgrass And Miscanthus RhizosphereMSERARRRQLGRGLAALFGEAEGGTSADPAPQRRVPI
Ga0070712_10142090213300006175Corn, Switchgrass And Miscanthus RhizosphereMSERARRRQLGRGLATLFGETEGGSSTDPPPQRRV
Ga0079222_1145841323300006755Agricultural SoilMSERARRRQLGRGLAALFGETDGGAAADPAPQRRIPIELIRPGMFQPRR
Ga0066665_1114841023300006796SoilMSERATRRQLGRGLAALFGEGEGDATVDPVPQRLVPIELIRPGTLQPRQRFA
Ga0066659_1120540723300006797SoilMSERATRRQLGRGLAELFGEGEGDATVDPAPQRLVPIELIRPGPL
Ga0079220_1158114023300006806Agricultural SoilMSERARRRQLGRGLAALFGEAEGGASAEPAPQRRVPI
Ga0074046_1042828413300010339Bog Forest SoilMSERAKRRPLGRGLAALFGEAEGDAAIDAASHRRVPIELIRP
Ga0126381_10145227723300010376Tropical Forest SoilMAEPARRRQLGRGLAALFGEAEGGAAADPAPQRRVPIEM
Ga0126383_1180405323300010398Tropical Forest SoilMAEPARRRQLGRGLAALFGEAEGGAAADPAPQRRVPIEMIRPGAF
Ga0137363_1077076013300012202Vadose Zone SoilMSERASRRQLGRGLAALFGEAEVEAIAEPAPQRRVPIELIRP
Ga0137412_1118075213300015242Vadose Zone SoilVSERASRRQLGRGLAALFGEAEVEAIAEPAPQRRVPIE
Ga0182041_1088725723300016294SoilMSERAARRQLGRGLAALFDEADGVASVDPAGQRRVPIELIR
Ga0182041_1123105413300016294SoilMSERAVGGRSRRRPLGRGLAALFGEAEAGGTADAA
Ga0182041_1152049333300016294SoilMSGRAARRQLSRGLAALFGETDGGAFAGTAPQRLVPIEWIRPGTLQ
Ga0182032_1032693113300016357SoilMSERTRRRQLGRGLAALFGEADGALAVDPAPQRRVPI
Ga0182032_1053646713300016357SoilMSERASRRQLGRGLAELFGEVDGVASPAAVSQRLVPIERI
Ga0182034_1019445233300016371SoilMSGRTAGRQLGRGLAALFGEADGITPVDPARQRLVPIERIRPGSLQ
Ga0182034_1139450413300016371SoilMSERAARRQLGRGLTALFGEADGSAFAGAAPQRLVPIER
Ga0182034_1166281413300016371SoilMSERASRRQLGRGLAELFGEAGEGALAGAGAGSQRLVPIE
Ga0182039_1040562413300016422SoilMVSERTARRQLGRGLAALFGEADGGAYADPELQRRVPIELIRPGVYQPRR
Ga0182038_1145216923300016445SoilMSERARRRQLGRGLAALFGEAEIDPVAEPPAQRRIPIELIRPAHFSRAAALPRPS
Ga0210407_1055959623300020579SoilMSERARRRQLGRGLATLFGETEHGSPADPAPQRRVPIELIRPGAFQPR
Ga0210406_1047306423300021168SoilMSERAVRRPLGRGLAALFGEAEGGMSADTEPQRRIPIELI
Ga0210406_1103272513300021168SoilMSERASRRQLGRGLAALFGEAEVDALAEPAPQRRVPIE
Ga0210408_1130769413300021178SoilMSERARRRQLGRGLATLFGETEHGSPADPAPQRRVPIELIRPGAL
Ga0213877_1035729923300021372Bulk SoilMSERAAKRQLGRGLAALFGEPDNGSPIGHASERRVPIELIRPGALQPRRR
Ga0210393_1133559013300021401SoilMSEPAKRRPLGRGLAALFGEIEPAEALEPVAQRRVAIEL
Ga0210383_1113491713300021407SoilMSERAARRQLGRGLAALFGDADGVSPADPAGQRCVPIELIR
Ga0210394_1176917713300021420SoilMSEGARHRPLGRGLAALFGETEGGASFDPASPRRVP
Ga0187846_1026530623300021476BiofilmMSERAARRQLGRGLAALFGEAGEGALAGAGAGPQRLVPIERI
Ga0210410_1092959023300021479SoilMSEGARHRPLGRGLAALFGETEGGASFDPASPRRVPIELIRPGALQPRR
Ga0126371_1023237513300021560Tropical Forest SoilMSERTRRRQLGRGLAALFGEADGALAMDPAPQRRVPIE
Ga0126371_1295236323300021560Tropical Forest SoilMSERAKRQQLGRGLAVLFGETENGLAAEPAAQRRVP
Ga0222756_105386523300022709SoilMSERARRRQLGRGLATLFGETEHGSSADTPQRRVPIE
Ga0242661_103773313300022717SoilMSEGARHRPLGRGLAALFGETDGGASFDPASPRRVPIEL
Ga0257152_102277823300026369SoilMSERATRRQLGRGLAELFGEGEGDATVDPAPQRLVPIELI
Ga0207948_104417723300027174Forest SoilMSERARRRQLGRGLATLFGETESGSSADPAPQRRVPIELIRPGAFQPRRR
Ga0209655_1009386713300027767Bog Forest SoilMSERARRRQLGRGLATLFGETEGGSSADPAPQRRVPIE
Ga0209488_1072963723300027903Vadose Zone SoilMSERASRRQLGRGLAALFGEAEVEALAEPAPQRRVP
Ga0170824_11065792023300031231Forest SoilMSERAARRQLGRGLAALFGEADGVAPVDPALQRLVPIERIRPGTLQP
Ga0318516_1009916733300031543SoilMSERASRRQLGRGLAELFGEAGEGALAGAGAGSQRLVPIERIRPGALQPR
Ga0318538_1017396733300031546SoilMSERTARRQLGRGLAALFGEANGAAVADPGSRRVPIELIRPGVF
Ga0318538_1027962623300031546SoilMSEGVKRRPLGRGLAALFGEAETDEAADPTAQRRVPIELIRP
Ga0318538_1061168023300031546SoilMSERTRRRQLGRGLAALFGEADGALAMDPAPQRRVPIELIRPGAFQPRRR
Ga0318528_1065592813300031561SoilMSGRAAGRQLGRGLAALFGEADGVEPVDPVSQRLVPIERIRPGALQPRRR
Ga0318573_1023279423300031564SoilMSERAKRQQLGRGLAVLFGEAESGPPAEPAAQRRVPIELVRPSAFQPR
Ga0318573_1037889523300031564SoilMSGRAAGRQLGRGLAALFGEADGVEPVDPVSQRLVPIERIRPGALQP
Ga0310915_1086240523300031573SoilMSERASRRQLGRGLAELFGEADGVASTAGASQRLVP
Ga0310915_1095522213300031573SoilMSERAARRQLGRGLAALFGEADGAASADPAQQRFVPIEWIRPGKLQ
Ga0318574_1020836213300031680SoilMSEGVKRRPLGRGLAALFGEAETDEAADPTAQRRVPIELIRPGALQP
Ga0318574_1094752323300031680SoilMSERTRHRRLGRGLATLFGEAEVDGSAEPAPQRRVPI
Ga0318572_1009605813300031681SoilMSERAARRQLGRGLAALFGEAEGSAFAGAAPQRLAPIERIRPG
Ga0318496_1037353923300031713SoilVSERARRRQLGRGLAALFGEAEGEAVAEPAMQRRVPIELIRPSAF
Ga0307468_10061063913300031740Hardwood Forest SoilMSERARGRQLGRGLAVLFGEGETDAPGDGMPQRSVPIELIRPGMF
Ga0306918_1034797033300031744SoilMSERASRRQLGRGLAELFGEVDGVASPAAVSQRLVPIERIRPGAFQP
Ga0318492_1029122013300031748SoilMSERAARRQLGRGLTALFGEADGSAFAGAAPQRLVPIERIRPGALQ
Ga0318494_1029587423300031751SoilMSERTARRQLGRGLAALFGEADGGAYADPELQRRVPIELIRPGVF
Ga0307477_1026823413300031753Hardwood Forest SoilMSERAKRRPLGRGLASLFGEAEGEVSFDPASPRRV
Ga0307475_1012307143300031754Hardwood Forest SoilMSERARRRQLGRGLATLFGETEGGSSADPVAQRRVPIELIRPGA
Ga0318535_1026297423300031764SoilMVSERTARRQLGRGLAALFGEADGGAYADPELQRRVPIELIRPGVY
Ga0318554_1072819823300031765SoilMSERTRRRQLGRGLATLFGETESGSSADPAPQRRVPIELI
Ga0318509_1067189213300031768SoilMSERAKRRQLGRGLAALFGETEIDAAAEAPAQRRIPIELIRP
Ga0318526_1045573213300031769SoilMSERARRRQLGRGLAALFGEAEGDAAADLAPQRQVP
Ga0318521_1033905223300031770SoilMSERAARRQLGRGLAALFGEAEGSAFAGAAPQRLAPIERIRPGALQPRR
Ga0318498_1053680013300031778SoilMSERASRRQLGRGLAALFGETEAAGSAEPVAQRLVPIEWIRPG
Ga0318566_1003188813300031779SoilMSERAARRQLGRGLAALFGEAPAATAGDPAPQRLVPIEL
Ga0318566_1065991513300031779SoilMSERAVRRPLGRGLAALFGEGEPLDPAAPRRVAIELIRPGAFQPRR
Ga0318548_1010576913300031793SoilMSERTRRRQLGRGLATLFGETESGSSADPAPQRRVPIELIR
Ga0318503_1009598623300031794SoilMSEGVKRRPLGRGLAALFGEAETDEAADPTAQRRVPIELIRPGALQPRRR
Ga0318557_1035068813300031795SoilMSERAARRQLGRGLAALFGEAEGSAFAGAAPQRLAPIERIRPGALQPRRLFA
Ga0318565_1041272613300031799SoilMSERAKRRQLGRGLAALFGETEIDAAAEAPAQHRIPIELIRPSAFQ
Ga0318568_1013809013300031819SoilMSERAKRRQLGRGLAALFGETEIDAAAEAPAQHRIP
Ga0318568_1019938113300031819SoilMSERAARRQLGRGLAALFGEAEGSAFAGAAPQRLAPIERIRPGALQ
Ga0307478_1015427043300031823Hardwood Forest SoilMSERAKRRPLGRGLAALFGEAEGEVSFDPASPRRVAIELI
Ga0318564_1048523513300031831SoilMSERARRRQLGRGLATLFGESDGGSSADPAPQRRVPIELIRPGAF
Ga0310917_1102262723300031833SoilMSERASRRQLGRGLAELFGEVDGVASPAAVSQRLVPIERIRPGAFQPRRR
Ga0318517_1038838823300031835SoilMSGRTAGRQLGRGLAALFGEADGITPVDPARQRLVP
Ga0318527_1006280833300031859SoilMSERARRRQLGRGLAALFGEAEGDAAADPATQRQVPIELIRPGAFQ
Ga0306919_1001243073300031879SoilMSERARRRQLGRGLAALFGEAEIDPVAEPPAQRRIPIELIRPGA
Ga0318544_1026055613300031880SoilMSERAARRQLGRGLAALFGEAGEGALAGAGAGPQRLVPIERFR
Ga0318551_1014136033300031896SoilMSEGVKRRPLGRGLAALFGEAESDEAADPTAQRRVPI
Ga0310912_1016130013300031941SoilMSERARRRQLGRGLATLFGESDGGSSADPAPQRRV
Ga0310912_1062428813300031941SoilMSERARRAHLGRGLAALFREAETATPTDLLAQRRVPIELIRPGAFQ
Ga0310916_1040038533300031942SoilMSERARRAHLGRGLAALFREAETATPTDLLAQRRVPIEL
Ga0310913_1125310913300031945SoilMSERASRRQLGRGLAELFGEADGVASTAGASQRLVPIERIRPGTLQPR
Ga0306926_1300619513300031954SoilMSERTRRRQLGRGLATLFGETESGSSADPAPQRRVPIELIRPG
Ga0318530_1027942623300031959SoilMSERTARRQLGRGLAALFGEANGAAVADPGSRRVPIELIRPGVFQP
Ga0318531_1016232713300031981SoilMSERARRAHLGRGLAALFREAETATPTDLLAQRRVPIELIRPGAFQPR
Ga0310911_1004979813300032035SoilMSERAARRQLGRGLAALFGEAPAATAGDPAPQRLVPIELIRPGALQPR
Ga0318556_1004204313300032043SoilMSERAARRQLGRGLAALFGEAEGSAFAGAAPQRLAPIERIRPGALQPRRRR
Ga0318556_1031753623300032043SoilMSERARRRQLGRGLAALFGEAEGDAAADPATQRQVPIELIRPG
Ga0318506_1015327533300032052SoilMSERAARRQLGRGLAALFGEAGEGALAGAGAGPQRLVPIERIR
Ga0318575_1029900723300032055SoilMSERASRRQLGRGLAALFGETEVGGSAEPRAQRLVPIEWIRPG
Ga0318514_1054482713300032066SoilMSERASRRQLGRGLAELFGEAGEGALAGAGAGSQRLV
Ga0306924_1146459823300032076SoilMSERARRRQLGRGLAALFGEAEIDPVAEPPAQRRIPI
Ga0318540_1028796013300032094SoilMSERASRRQLGRGLAELFGEAGEGALAGAGAGSQRLVPIER
Ga0307471_10049387433300032180Hardwood Forest SoilMSERATRRQLGRGLAALFGEGEGGATVDPAPQRLVPIELIRPGTLQPRR
Ga0306920_10257062223300032261SoilMSERAVGERSRRRPLGRGLAALFGEAEAGGAADAAAPWQVPI
Ga0306920_10295068513300032261SoilMSERASRRQLGRGLAALFGETEAAGSAEPVAQRLV
Ga0318519_1020826313300033290SoilMVSERTARRQLGRGLAALFGEADGGAYADPELQRRVPIELIRPG


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