Metagenome / Metatranscriptome Family F092679

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092679
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	68 residues
Representative Sequence	MKRIPTKYPHVFNADGTRRYERCRGYLEIVCDASGVYVCCNECGEGYRFQFVMRRSDELANGSDGKIY
Number of Associated Samples	76
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.56 %
% of genes near scaffold ends (potentially truncated)	30.84 %
% of genes from short scaffolds (< 2000 bps)	89.72 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.336 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.299 % of family members)
Environment Ontology (ENVO)	Unclassified (29.907 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.794 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 27.08% Coil/Unstructured: 72.92%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01551	Peptidase_M23	26.17
PF03401	TctC	7.48
PF08386	Abhydrolase_4	6.54
PF00106	adh_short	3.74
PF05433	Rick_17kDa_Anti	3.74
PF12697	Abhydrolase_6	2.80
PF00561	Abhydrolase_1	2.80
PF01575	MaoC_dehydratas	1.87
PF00989	PAS	0.93
PF01494	FAD_binding_3	0.93
PF12849	PBP_like_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	7.48
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.87
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.93
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.93
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.34 %
Unclassified	root	N/A	47.66 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.34 %
Unclassified	root	N/A	47.66 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.34 %
Unclassified	root	N/A	47.66 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.66 %
Unclassified	root	N/A	47.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	39.25 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.66 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	7.48 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	1.87 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.66 %
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	7.48 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	1.87 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.66 %
Novimethylophilus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Novimethylophilus	7.48 %
Aromatoleum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum	0.93 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.66 %
Novimethylophilus kurashikiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Novimethylophilus → Novimethylophilus kurashikiensis	7.48 %
Aromatoleum toluclasticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → Aromatoleum toluclasticum	0.93 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_103427359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1654	Open in IMG/M
3300003321\|soilH1_10302775	All Organisms → cellular organisms → Bacteria → Proteobacteria	1429	Open in IMG/M
3300004114\|Ga0062593_100805022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	935	Open in IMG/M
3300004156\|Ga0062589_100177025	All Organisms → cellular organisms → Bacteria → Proteobacteria	1505	Open in IMG/M
3300004156\|Ga0062589_101315444	Not Available	699	Open in IMG/M
3300004643\|Ga0062591_100257934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Novimethylophilus → Novimethylophilus kurashikiensis	1336	Open in IMG/M
3300005093\|Ga0062594_101947072	Not Available	625	Open in IMG/M
3300005364\|Ga0070673_101299193	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005471\|Ga0070698_100937341	Not Available	812	Open in IMG/M
3300005564\|Ga0070664_101635199	Not Available	610	Open in IMG/M
3300005833\|Ga0074472_10880695	Not Available	507	Open in IMG/M
3300006169\|Ga0082029_1490855	All Organisms → cellular organisms → Bacteria → Proteobacteria	1421	Open in IMG/M
3300006845\|Ga0075421_100003492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	18814	Open in IMG/M
3300006845\|Ga0075421_101970323	Not Available	623	Open in IMG/M
3300006894\|Ga0079215_10164325	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300006969\|Ga0075419_10131110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → Aromatoleum toluclasticum	1629	Open in IMG/M
3300007004\|Ga0079218_10165158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Novimethylophilus → Novimethylophilus kurashikiensis	1639	Open in IMG/M
3300007004\|Ga0079218_11688496	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300009053\|Ga0105095_10570215	Not Available	629	Open in IMG/M
3300009087\|Ga0105107_10333804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1057	Open in IMG/M
3300009156\|Ga0111538_13326646	Not Available	559	Open in IMG/M
3300009156\|Ga0111538_13422632	Not Available	551	Open in IMG/M
3300009789\|Ga0126307_11070778	Not Available	652	Open in IMG/M
3300010039\|Ga0126309_10570580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	707	Open in IMG/M
3300010040\|Ga0126308_10964740	Not Available	596	Open in IMG/M
3300010044\|Ga0126310_10286847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1127	Open in IMG/M
3300010375\|Ga0105239_13181759	Not Available	535	Open in IMG/M
3300010397\|Ga0134124_12328173	Not Available	576	Open in IMG/M
3300010399\|Ga0134127_10312354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1519	Open in IMG/M
3300011332\|Ga0126317_10028610	Not Available	574	Open in IMG/M
3300011332\|Ga0126317_10659100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	587	Open in IMG/M
3300011332\|Ga0126317_10977570	Not Available	624	Open in IMG/M
3300011412\|Ga0137424_1003993	All Organisms → cellular organisms → Bacteria → Proteobacteria	1626	Open in IMG/M
3300012212\|Ga0150985_102127382	Not Available	527	Open in IMG/M
3300012212\|Ga0150985_104320171	Not Available	538	Open in IMG/M
3300012212\|Ga0150985_104611551	Not Available	1342	Open in IMG/M
3300012212\|Ga0150985_109360032	All Organisms → cellular organisms → Bacteria → Proteobacteria	2751	Open in IMG/M
3300012212\|Ga0150985_123154831	Not Available	563	Open in IMG/M
3300012469\|Ga0150984_102727970	Not Available	505	Open in IMG/M
3300012469\|Ga0150984_110563031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1438	Open in IMG/M
3300012469\|Ga0150984_113687561	Not Available	540	Open in IMG/M
3300012469\|Ga0150984_114842542	Not Available	508	Open in IMG/M
3300012469\|Ga0150984_117183703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	566	Open in IMG/M
3300012469\|Ga0150984_121628238	Not Available	514	Open in IMG/M
3300012469\|Ga0150984_122588693	Not Available	503	Open in IMG/M
3300012682\|Ga0136611_10228329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Novimethylophilus → Novimethylophilus kurashikiensis	1257	Open in IMG/M
3300012987\|Ga0164307_11685045	Not Available	537	Open in IMG/M
3300012988\|Ga0164306_11768101	Not Available	537	Open in IMG/M
3300013308\|Ga0157375_12564799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	609	Open in IMG/M
3300014326\|Ga0157380_12268774	Not Available	607	Open in IMG/M
3300015374\|Ga0132255_104365075	Not Available	600	Open in IMG/M
3300017965\|Ga0190266_10523493	Not Available	697	Open in IMG/M
3300018027\|Ga0184605_10079109	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300018051\|Ga0184620_10216154	Not Available	640	Open in IMG/M
3300018061\|Ga0184619_10004621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5116	Open in IMG/M
3300018422\|Ga0190265_10046272	All Organisms → cellular organisms → Bacteria → Proteobacteria	3757	Open in IMG/M
3300018422\|Ga0190265_11833397	Not Available	714	Open in IMG/M
3300018422\|Ga0190265_12272563	Not Available	644	Open in IMG/M
3300018422\|Ga0190265_13044054	Not Available	560	Open in IMG/M
3300018429\|Ga0190272_10929067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	821	Open in IMG/M
3300018429\|Ga0190272_12101088	Not Available	602	Open in IMG/M
3300018429\|Ga0190272_12927881	Not Available	528	Open in IMG/M
3300018432\|Ga0190275_10070520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2996	Open in IMG/M
3300018432\|Ga0190275_10217478	Not Available	1820	Open in IMG/M
3300018432\|Ga0190275_10365263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1441	Open in IMG/M
3300018432\|Ga0190275_12023585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	655	Open in IMG/M
3300018432\|Ga0190275_12038846	Not Available	652	Open in IMG/M
3300018466\|Ga0190268_10825725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	707	Open in IMG/M
3300018466\|Ga0190268_12228292	Not Available	513	Open in IMG/M
3300018469\|Ga0190270_10050753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2880	Open in IMG/M
3300018476\|Ga0190274_11585980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	747	Open in IMG/M
3300018481\|Ga0190271_10926712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Novimethylophilus → Novimethylophilus kurashikiensis	996	Open in IMG/M
3300018920\|Ga0190273_11780015	Not Available	560	Open in IMG/M
3300019377\|Ga0190264_10603153	Not Available	784	Open in IMG/M
3300020146\|Ga0196977_1004370	All Organisms → cellular organisms → Bacteria → Proteobacteria	3911	Open in IMG/M
3300020146\|Ga0196977_1004422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3881	Open in IMG/M
3300020186\|Ga0163153_10069935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2246	Open in IMG/M
3300020195\|Ga0163150_10270046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	852	Open in IMG/M
3300020215\|Ga0196963_10125674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1087	Open in IMG/M
3300021067\|Ga0196978_1032489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	967	Open in IMG/M
3300024430\|Ga0196962_10032231	Not Available	1572	Open in IMG/M
3300024430\|Ga0196962_10146314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Novimethylophilus → Novimethylophilus kurashikiensis	748	Open in IMG/M
3300025315\|Ga0207697_10258601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	770	Open in IMG/M
3300025930\|Ga0207701_10201611	All Organisms → cellular organisms → Bacteria → Proteobacteria	1748	Open in IMG/M
3300025960\|Ga0207651_11482447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	611	Open in IMG/M
3300026116\|Ga0207674_12264555	Not Available	506	Open in IMG/M
3300027713\|Ga0209286_1155869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Novimethylophilus → Novimethylophilus kurashikiensis	836	Open in IMG/M
3300027909\|Ga0209382_10003434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	21966	Open in IMG/M
3300030783\|Ga0102752_1003612	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300031058\|Ga0308189_10384429	Not Available	575	Open in IMG/M
3300031058\|Ga0308189_10531777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	510	Open in IMG/M
3300031455\|Ga0307505_10052706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1810	Open in IMG/M
3300031481\|Ga0314816_1056879	Not Available	528	Open in IMG/M
3300031548\|Ga0307408_100119153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	2042	Open in IMG/M
3300031852\|Ga0307410_12004293	Not Available	517	Open in IMG/M
3300031892\|Ga0310893_10269372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	711	Open in IMG/M
3300031901\|Ga0307406_10730938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Novimethylophilus → Novimethylophilus kurashikiensis	829	Open in IMG/M
3300031903\|Ga0307407_11404350	Not Available	550	Open in IMG/M
3300031911\|Ga0307412_10290947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1287	Open in IMG/M
3300031965\|Ga0326597_10684495	Not Available	1082	Open in IMG/M
3300031995\|Ga0307409_100248048	Not Available	1626	Open in IMG/M
3300031996\|Ga0308176_10544811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1185	Open in IMG/M
3300032002\|Ga0307416_103404328	Not Available	532	Open in IMG/M
3300032075\|Ga0310890_11394676	Not Available	575	Open in IMG/M
3300034384\|Ga0372946_0100043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1358	Open in IMG/M
3300034384\|Ga0372946_0110697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Novimethylophilus → Novimethylophilus kurashikiensis	1292	Open in IMG/M
3300034384\|Ga0372946_0575361	Not Available	546	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.22%
Host-Associated	Host-Associated	31.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.21%
Plants	Host-Associated → Plants	31.78%
Aquatic	Environmental → Aquatic	14.02%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.30%
Freshwater	Environmental → Aquatic → Freshwater	9.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.48%
Sediment	Environmental → Aquatic → Sediment	4.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.35%
Sand	Environmental → Terrestrial → Soil → Sand	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.67%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.74%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.80%
Lake	Environmental → Aquatic → Freshwater → Lake	1.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Ice	Environmental → Aquatic → Freshwater → Ice	0.93%
Loam	Environmental → Terrestrial → Soil → Loam	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.35%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.41%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.74%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.54%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	6.54%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	5.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.67%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.67%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	3.74%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.80%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	1.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.93%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.93%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.93%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.93%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020146	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C	Environmental	Open in IMG/M
3300020186	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1	Environmental	Open in IMG/M
3300020195	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.P2.IB	Environmental	Open in IMG/M
3300020215	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5	Environmental	Open in IMG/M
3300021067	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300030783	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 3C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031481	Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1034273592	3300000956	Soil	MPQGFEAGFMAGPILAQLKGMKRIPTKYRHIFNADGTRRHEACTGYLEIVSDVSGVYVCCNECGEGYRFQFLMRRSDELTNGSDGKFY*
soilH1_103027753	3300003321	Sugarcane Root And Bulk Soil	MKRISTRYPHIFNADGTRRYERCRGYLEIVCDSSGVYVCCNECGEGYRFQFIMRRSDELANGSDGKIY*
Ga0062593_1008050222	3300004114	Soil	MKRISTKYRHVFNADGTRRREPCAGHLEIVCDTAGVFVCCSECGEGYRFQFVMRRSDELANGA
Ga0062589_1001770252	3300004156	Soil	MKRIPTKYQHVFNADGTRRYEPCKGNLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELTNGSDGTLY*
Ga0062589_1013154442	3300004156	Soil	MKRIPTKYPHIFNADGTRRYERCRGYLEIVSDASGVYVCCNECGEGYRFQFIMRRSDELTNGSDGKIF*
Ga0062591_1002579342	3300004643	Soil	MKRISTKYRHVFNADGTRRREPCAGHLEIVCDTAGVFVCCSECGEGYRFQFVMRRSDELANGADDYRP*
Ga0062594_1019470721	3300005093	Soil	SFSWPIPCSEWSMKRIPTKYQHVFNADGTRRYEPCKGNLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELTNGSDGTLY*
Ga0070673_1012991932	3300005364	Switchgrass Rhizosphere	MKRIPTKYPHVFNAEGTRRYARCSGYLEIVCDKGGVYVCCGECGEGYRFQFVMRRSDELTSGGGEGKLV*
Ga0070698_1009373411	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTGWHYPCSVMSMKRVPTKYRHTFNADGSRRYEPCLGYLEIVCDVSGVYVCCNHCGEGYRFQFVMRRSDELANGSGGKIY*
Ga0070664_1016351992	3300005564	Corn Rhizosphere	KYQHVFNADGTRRYEPCKGNLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELTNGSDGTLY*
Ga0074472_108806951	3300005833	Sediment (Intertidal)	MKRIPTQYPHLFNADGSRRAERCTGYLEIVADASGVYACCNECGEGYRFQFVMRRSDELARGRDR*
Ga0082029_14908552	3300006169	Termite Nest	MRRISTKYPHIFNADGTRRYERCRGYLEIVCDASGVYVCCNECGEGYRFQFVMRRSDELANGSDGKIY*
Ga0075421_10000349214	3300006845	Populus Rhizosphere	MKRIPTKYPHIFNADGTTRYERCRGYLEIVCDGSGVYVCCNECGEGYRFQFVMRRSDELANGSDGKIY*
Ga0075421_1019703233	3300006845	Populus Rhizosphere	MKRIPTKYPHVFNADGTRRYERCRGYLEIVCDASGVYVCCNECGEGYRFQFVMRRSDELANGSDGKIY*
Ga0079215_101643253	3300006894	Agricultural Soil	MKRIPTKYPHIFNADGTRRYDACRGHLEVVCDRSGVYVCCNECGEGYRFQFVMRRSDELANGSDGKTF*
Ga0075419_101311104	3300006969	Populus Rhizosphere	MKRIPTKYPHIFNADGTTRYERCRGYLEIVCDGSGVYVCCNECGEGYRFQFVMRRSDELA
Ga0079218_101651581	3300007004	Agricultural Soil	MKRIPTKYPHIFNADGTKRYERCRGYLEIVSDASGVYVCCNECGEGYRFQFIMRRSDELTNGSDGKIF*
Ga0079218_116884961	3300007004	Agricultural Soil	MKRIPTKYPHAFNADGSRRHVRCRGYLEIVCDRGGVYVCCGECGEGYRFQFVMRRSDELTSGGADGKLY*
Ga0105095_105702152	3300009053	Freshwater Sediment	MKRIPTKYPHTYNADGTRRYQRCRGHLEVVCDGSGVYVCCNECGEGYRFQFVMRRSDELANGSGGKVL*
Ga0105107_103338042	3300009087	Freshwater Sediment	MKRIATQYPHVFNADGTRRRESCRGHLEIVCEAAGVYVCCNECGEGYRFQFVMRRSDELANGSDGFRY*
Ga0111538_133266461	3300009156	Populus Rhizosphere	MKRIPTKYQHVFNADGTRRYEPCKGNLEIVSDASGVYVCCNECGEGYRLQFVRRRSDELTNGSDCTLY*
Ga0111538_134226321	3300009156	Populus Rhizosphere	MKRIPTKYPHIFNADGTRRYERCRGYLEIVSDASGVYVCCSECGEGYRFQFIMRRSDELTNGSDGKIF*
Ga0126307_110707781	3300009789	Serpentine Soil	MKRIPTKYPHMFNADGTRRYERCRGYLEVVCDRSGVYVCCNECGEGYRFQFVMRRSDELANGSDGKTF*
Ga0126309_105705801	3300010039	Serpentine Soil	MKRIATKYQHLYNADGTKRHGACKGYLEIVSDSSGVYVCCSDCGEGYRFQFVMRRSDEL
Ga0126308_109647402	3300010040	Serpentine Soil	MRRIPTKYPHIFNADGSRRYERCRGYLEIVCDGSGVYVCCNECGEGYRFQFVMRRSDELANGSDGKTY*
Ga0126310_102868472	3300010044	Serpentine Soil	MKRIATKYQHLYNADGTKRHEACKGYLEIVSDSSGVYVCCSDCGEGYRFQFVMRRSDELTNGSDGTLY*
Ga0105239_131817591	3300010375	Corn Rhizosphere	MKRIPTKYQHIFNADGTRRYERCRGYLEIVCDSTGVYVCCNECGEGYRFQFIMRRSDELANGSDGKIY*
Ga0134124_123281731	3300010397	Terrestrial Soil	MKRIPTKYPHTFNADGTPRRTRCSGYLEIVCDTGGVYVCCSECGEGYRFQFVMRRSDELANGGEAPPY*
Ga0134127_103123542	3300010399	Terrestrial Soil	MPQGFEAGFMAGPILAQLKGMKRIPTKYRHIFNADGTRRHEACTGYLEIVSDVSGVYVCCNECGEGYRFQFLMRRSDELTN
Ga0126317_100286101	3300011332	Soil	CSEWSMKRIPTKYQHVFNADGTRRYEPCKGNLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELTNGSDGTLY*
Ga0126317_106591001	3300011332	Soil	HVFNADGTRRYEPCKGNLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELTNGSDGTLY*
Ga0126317_109775701	3300011332	Soil	HVFNADGTRRREPCAGHLEIVCDTAGVFVCCSECGEGYRFQFVMRRSDELANGADDCRP*
Ga0137424_10039932	3300011412	Soil	MKRISTRYRHTFNADGSRRREPCSGVLQIVCDASGVYVCCSECGEGYRFQFVMRRSDELANGGEDYRL*
Ga0150985_1021273821	3300012212	Avena Fatua Rhizosphere	KYAHVFNADGTRRFEACPGYLEIVSDASGVYVCCSECGEGYRFQFVMRRSDELANGSDR*
Ga0150985_1043201712	3300012212	Avena Fatua Rhizosphere	FNADGTRRYERCRGYLEIVCDSTGVYVCCNECGEGYRFQFIMKRSDELANGSDGKTY*
Ga0150985_1046115511	3300012212	Avena Fatua Rhizosphere	MKRISTKYRHVFNADGTRRREPCAGHLEIVCDTAGVFVCCSECGEGYRFQFVMRRSDELANGADDCRP*
Ga0150985_1093600322	3300012212	Avena Fatua Rhizosphere	MKRIPTKYHHVFNADGTRRYEPCKGNLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELTNGSDGTLY*
Ga0150985_1231548312	3300012212	Avena Fatua Rhizosphere	PHLFNADGTRRYEACKGYLEIVSDSSGVYVCCSECGEGYRFQFVMRRSDELTNGSDGTLY
Ga0150984_1027279702	3300012469	Avena Fatua Rhizosphere	MKRIPTKYPHIFNADGTRRYERCRGYLEIVCDSTGVYVCCNECGEGYRFQFIMKRSDELANGSDGKTY*
Ga0150984_1105630311	3300012469	Avena Fatua Rhizosphere	QHVFNADGTRRYEPCKGNLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELTNGSDGTLY
Ga0150984_1136875612	3300012469	Avena Fatua Rhizosphere	MKRIPTKYPHVFNADGSRRFEACTGYLEVVSDASGVYVCCNECGEGYRFQFVMRRSDELANGSDR*
Ga0150984_1148425421	3300012469	Avena Fatua Rhizosphere	TKYPHIFNADGTRRVEACDGYLEIVSDGSGVYVCCNECGEGYRFQFVMRRSDELANGSDR
Ga0150984_1171837033	3300012469	Avena Fatua Rhizosphere	FNADGTRRYERCRGYLEIVCDSTGVYVCCNECGEGYRFQFIMRRSDELANGSDGKIY*
Ga0150984_1216282381	3300012469	Avena Fatua Rhizosphere	VMKRIPTKYPHIFNADGTRRVEACDGYLEIVSDVSGVYVCCSECGEGYRFQFVMRRSDELANGSDR*
Ga0150984_1225886932	3300012469	Avena Fatua Rhizosphere	TKYQHIFNADGTRRREACSGYLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELANGRDR
Ga0136611_102283292	3300012682	Polar Desert Sand	MKRIPTKYPHVFNADGSRRYDRCGGHLEVVCDRTGVYVCCSECGEGYRFQFVMRKSDELANGRDGKIY*
Ga0164307_116850451	3300012987	Soil	MKRISTKYRHVFNADGTRLREPCAGHLEIVCDTAGVFVCCSECGEGYRFQFVMRRSDELANGADDYRP*
Ga0164306_117681011	3300012988	Soil	RISTKYRHVFNADGTRLREPCAGHLEIVCDTAGVFVCCSECGEGYRFQFVMRRSDELANGADDYRP*
Ga0157375_125647992	3300013308	Miscanthus Rhizosphere	MKRIPTKYPHTFNADGTPRRTRCSGYLEIVCDTGGVYVCCSECGEGYRFQFVMRRSDELTSGGDGKLY*
Ga0157380_122687742	3300014326	Switchgrass Rhizosphere	MAGPILAQIKGMKRIPTKYRHIFNADGTRRHEACTGYLEIVSDVSGVYVCCNECGEGYRFQFLMRRSDELTNGSGGKFY*
Ga0132255_1043650751	3300015374	Arabidopsis Rhizosphere	MKRISTKYRHVFNADGTRRREPCAGHLEIVCDTAGVFVCCSECGEGYRFQFVMRRSDELANGADDGRP*
Ga0190266_105234932	3300017965	Soil	MKRIPTKYPHIFNADGSRRYERCRGYLEVVSDRSGVYVCCNECGEGYRFQFVMRRSDEMASGSDGPAGAAGR
Ga0184605_100791092	3300018027	Groundwater Sediment	MKRIPTKYPHLFNADGTRRYEACKGYLEIVSDSSGVYVCCSECGEGYRFQFVMRRSDELTNGSDGTLY
Ga0184620_102161541	3300018051	Groundwater Sediment	MKRISTKYQHLFNADGTRRYESCTGYLEIVSDSTGVYVCCNECGEGYRFQFVMRRSDELANGSDGALF
Ga0184619_100046216	3300018061	Groundwater Sediment	MSWPIPCSEWVMKRIPTKYPHLFNADGTRRYEACKGYLEIVSDSSGVYVCCSECGEGYRFQFVMRRSDELTNGSDGTLY
Ga0190265_100462724	3300018422	Soil	MKRTPTKYPHMFNADGTRRYERCRGYLEVVCDKGGVYVCCNECGEGYRFQFVMRRSDELANGGSDGKIY
Ga0190265_118333973	3300018422	Soil	MKRIPTKYPHMFNADGTRRYERCRGYLEVVCDRSGVYVCCNECGEGYRFQFVMRRSDELANGSDGKTF
Ga0190265_122725632	3300018422	Soil	MKRIPTKYPHRFNADGTRRYERCRGYLEVVCDTSGVYVCCTECGEGYRFQFVMRRSDELANGSDDKIY
Ga0190265_130440542	3300018422	Soil	GMKRIPTKYPHIFNADGSRRYERCRGYLEIVCDSTVVDVCCSDGGEDYRFQFVMRRSDELANGGDGKFY
Ga0190272_109290672	3300018429	Soil	MKRIPTKYPHIFNADGSRRYERCRGYLEVVSDRSGVYVCCNECGEGYRFQFVMRRSDEMASGSDGKLD
Ga0190272_121010882	3300018429	Soil	MKRLITQYPHTFNADGTRRYVRCRGFLEVVCDRSGVYVCCNECGEGYRFQFVMRKSDELANGGSDGKIF
Ga0190272_129278812	3300018429	Soil	MKRIHTKYPHMFNADGTRRYERCRGYLEVVCDKSGVYVCCNECGEGYRFQFVMRRSDELANGSDGKIY
Ga0190275_100705202	3300018432	Soil	MKRLITKYPHVFNADGTRRDTRCRGFLEVVCDRSGVFVCCNECGEGYRFQFVMRKSDELANGGSDGKIF
Ga0190275_102174783	3300018432	Soil	MKRIPTKYPHIFNADGSRRYERCRGYLEVVSDRSGVYVCCNECGEGYRFQFVMRRSDEMASGSDGPAGTAGR
Ga0190275_103652632	3300018432	Soil	MKRIPTKYRHTFNADGSRRSETCTGHLEIVSDASGVYVCCDECGEGYRFQFVMRRSDELANGGDR
Ga0190275_120235852	3300018432	Soil	MKRIPTKYPHIFNADGTRRPERCQGNLDIVSDAIGVYVCCNHCGEGYRFQFVMRRSDELAKGSDR
Ga0190275_120388462	3300018432	Soil	MKRIPTKYRHIFNADGSRRPETCSGYLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELANGRDR
Ga0190268_108257252	3300018466	Soil	MPCSLKGMKRIPTKYPHIFNADGSRRFETCTGFLEIVSDASGVYVCCSECGEGYRFQFVMRRSDELANGSDR
Ga0190268_122282922	3300018466	Soil	MKRIPTKYRHIFNADGTRRPETCSGYLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELANGRDR
Ga0190270_100507532	3300018469	Soil	MKRIPTQYPHMFNADGTRRYERCRGYLEVVCDTSGVYVCCTECGEGYRFQFVMRRSDELANGSDGKNY
Ga0190274_115859801	3300018476	Soil	MKRIPTKYPHIFNADGSRRYERCRGYLEVVSDRSGVYVCCNECGEGYRFQFVMRRSDEMAGGNADGKIF
Ga0190271_109267122	3300018481	Soil	MKRIPTKYPHIFNADGSRRYERCRGYLEVVSDRSGVYVCCNECGEGYRFQFVMRRSDEMANGGNADGPVGASGR
Ga0190273_117800152	3300018920	Soil	IPCSEWVMKRIPTKYQHLYNADGTKRYEACKGYLEIVSDSSGVYVCCSDCGEGYRFQFVMRRSDELTSGGGS
Ga0190264_106031531	3300019377	Soil	MKRIPTKYPHMFNADGTRRYERCRGYLEVVCDRSGVYVCCNECGEGYRFQFVMRRSDELANGSGGKIH
Ga0196977_10043703	3300020146	Soil	MKRIPTKYPHIFNADGTRRYERCRGYLEIVSDASGVYVCCNECGEGYRFQFIMRRSDELANGSDGKIF
Ga0196977_10044222	3300020146	Soil	MKRIPTKFAHVYNADGTRRRQRCTGHLEIVCDASGVYVCCNECGEGYRFQFVMRRSDELMNGSSEGPLY
Ga0163153_100699354	3300020186	Freshwater Microbial Mat	MGMKRLITKYPHIFNADGTRRYVHCRGFLEVVSDRSGVYVCCNECGEGYRFQFVMRKSDELANGSDGKIF
Ga0163150_102700461	3300020195	Freshwater Microbial Mat	MKRIPTKYLHMFNADGTSRYERCSGHLEVVCDPNGVYVCCNECGEGYRFQFVLRRSDELENGSGMPRQ
Ga0196963_101256741	3300020215	Soil	MKRIPTKYPHVYNADGSKRYQRCSGYLEIVCDTSGVYVCCNECGEGYRFQFVMRRSDELMKGSEGPLY
Ga0196978_10324892	3300021067	Soil	TLLPWPGRWPGPCSDKGMKRIPTKFAHVYNADGTRRRQRCTGHLEIVCDASGVYVCCNECGEGYRFQFVMRRSDELMNGSSEGPLY
Ga0196962_100322312	3300024430	Soil	MKRIPTKYPHVFNADGTRRFEACSGYLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELANGSDR
Ga0196962_101463141	3300024430	Soil	MKRIPTKYPHIFNADGSRRYERCRGYLEVVCDASGVYVCCNECGEGYRFQFVMRRSDELANGSDGKIY
Ga0207697_102586011	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MKRIPTKYQHVFNADGTRRYEPCKGNLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELTNGSDGTLY
Ga0207701_102016112	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKRISTKYRHVFNADGTRRREPCAGHLEIVCDTAGVFVCCSECGEGYRFQFVMRRSDELANGADDYRP
Ga0207651_114824471	3300025960	Switchgrass Rhizosphere	MKRIPTKYQHVFNADGTRRYEPCKGNLEIVSDASGVYVCCSECGEGYRFQFVMRRSDELANGGDR
Ga0207674_122645551	3300026116	Corn Rhizosphere	STKYPHIFNADGTRRYERCRGYLEVVCDSSGVYVCCNECGEGYRFQFIMRRSDELANGSDGKIY
Ga0209286_11558691	3300027713	Freshwater Sediment	MKRIPTKYPHTYNADGTRRYQRCRGHLEVVCDGSGVYVCCNECGEGYRFQFVMRRSDELANGSGGKVL
Ga0209382_1000343412	3300027909	Populus Rhizosphere	MKRIPTKYPHIFNADGTTRYERCRGYLEIVCDGSGVYVCCNECGEGYRFQFVMRRSDELANGSDGKIY
Ga0102752_10036122	3300030783	Soil	VFNADGTRRHAHCHGFLEVVCDTGGVYVCCSECGEGYRFQFVMRRSDELTSGGDGKRY
Ga0308189_103844291	3300031058	Soil	KYQHLFNADGTRRYESCTGYLEIVSDSTGVYVCCNECGEGYRFQFVMRRSDELANGSDGTLF
Ga0308189_105317771	3300031058	Soil	TKYPHVFNADGTRRFDACIGYLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELANGGDR
Ga0307505_100527062	3300031455	Soil	MKRIPTKYPHIFNADGSKRYERCRGYLEVVSDRSGVYVCCNECGEGYRFQFVMRRSDEIADGSSGPAGARGR
Ga0314816_10568792	3300031481	Soil	YPHVFNADGTRRYEACTGYLEIVSDASGVYVCCSECGEGYRFQFVMKRSDELANGSDR
Ga0307408_1001191532	3300031548	Rhizosphere	MKRIPTKYPHIFNADGTRRDERCRGYLEIVCDASGVYVCCNECGEGYRFQFVMRRSDELANGSDGKIY
Ga0307410_120042931	3300031852	Rhizosphere	HHPCSDTGMKRIPTKYPHTFNADGTRRYERCRGYLEIVCDASGVYVCCNECGEGYRFQFVMRRSDELANGSDGKIY
Ga0310893_102693721	3300031892	Soil	MKRIPTKYRHLFNADGTRRNERCPGHLEIVCDTSGVFVCCSECGEGYRFQFIMRRSDELANGADDYRQ
Ga0307406_107309381	3300031901	Rhizosphere	MKRIPTKYPHTFNADGTRRYERCRGYLEIVCDASGVYVCCNECGEGYRFQFVMRRSDELANGS
Ga0307407_114043501	3300031903	Rhizosphere	MKRIPTKYPHTFNADGTRRYERCRGYLEIVCDASGVYVCCNECGEGYRFQFVMRRSDELANGSDGKIY
Ga0307412_102909471	3300031911	Rhizosphere	CSDTGMKRIPTKYPHTFNADGTRRYERCRGYLEIVCDASGVYVCCNECGEGYRFQFVMRRSDELANGSDGKIY
Ga0326597_106844952	3300031965	Soil	MGMKRIPTQYRHVFNADGTRRHEPCRGRLEIVCDASGVYVCCSECGEGYRFQFVMRRSDELANGGDGMQY
Ga0307409_1002480482	3300031995	Rhizosphere	MKRIPTKYQHLYNADGTRRYEACKGYLEIISDSSGVYVCCNECGEGYRFQFIMRRSDELTNGSDGALY
Ga0308176_105448111	3300031996	Soil	GALRFVVLESSELLRHHPCSVTGMKRISTKYPHIFNADGTRRYERCRGCLEIVCDSSGVYVCCNECGEGYRFQFIMKRSDELANGSDGKIY
Ga0307416_1034043281	3300032002	Rhizosphere	MKRIPTKYPHTFNADGTRRYERCRGYLEIVCDASGVYVCCNECGEGYRFQFVMRRSDEL
Ga0310890_113946762	3300032075	Soil	MKRIPTKYPHVFNADGTRRYARCSGYLEIVCDKGGVYVCCGECGEGYRFQFVMRRSDELTSGGGEGKLV
Ga0372946_0100043_24_254	3300034384	Soil	MDGPNLAQVEGMKRIPTKFPHTFNADGTRRFEACSGYLEIVSDASGVYVCCNECGEGYRFQFVMRRSDELANGSDR
Ga0372946_0110697_1005_1202	3300034384	Soil	MKRIPTKYPHIFNADGSRRYEACVGYLEIVSDGSGVYVCCNECGEGYRFQFVMRRSDELANGNDR
Ga0372946_0575361_2_181	3300034384	Soil	HLFNADGTRRYESCTGYLEIVSDSTGVYVCCNECGEGYRFQFVMRRSDELANGSDGTLF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092679

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences