Metagenome / Metatranscriptome Family F092654

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092654
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	61 residues
Representative Sequence	MRYSLHEIDKHQVVATTVAADRDEALEWFSEKLRLMLTFEGDPASADYLLDEWPEGLP
Number of Associated Samples	88
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.07 %
% of genes near scaffold ends (potentially truncated)	77.57 %
% of genes from short scaffolds (< 2000 bps)	97.20 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.879 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.019 % of family members)
Environment Ontology (ENVO)	Unclassified (18.692 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.336 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.93% β-sheet: 17.44% Coil/Unstructured: 61.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF03807	F420_oxidored	14.02
PF13538	UvrD_C_2	10.28
PF05532	CsbD	9.35
PF01494	FAD_binding_3	4.67
PF09361	Phasin_2	4.67
PF09723	Zn-ribbon_8	3.74
PF00719	Pyrophosphatase	1.87
PF00118	Cpn60_TCP1	1.87
PF00817	IMS	0.93
PF13628	DUF4142	0.93
PF06803	DUF1232	0.93
PF00474	SSF	0.93
PF05649	Peptidase_M13_N	0.93
PF01450	IlvC	0.93
PF02678	Pirin	0.93
PF02897	Peptidase_S9_N	0.93
PF00248	Aldo_ket_red	0.93
PF00067	p450	0.93
PF01566	Nramp	0.93
PF13604	AAA_30	0.93
PF00011	HSP20	0.93
PF07786	HGSNAT_cat	0.93
PF09864	MliC	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	9.35
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	9.35
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	4.67
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	4.67
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	4.67
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	1.87
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.87
COG0059	Ketol-acid reductoisomerase	Amino acid transport and metabolism [E]	1.87
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	0.93
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	0.93
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	0.93
COG2124	Cytochrome P450	Defense mechanisms [V]	0.93
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.93
COG1770	Protease II	Amino acid transport and metabolism [E]	0.93
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.93
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	0.93
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.81 %
Unclassified	root	N/A	40.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.81 %
Unclassified	root	N/A	40.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.88 %
Unclassified	root	N/A	40.19 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.76 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.02 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.93 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.93 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Mesorhizobium amorphae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae	0.93 %
Microvirga arsenatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	0.93 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.93 %
Nematoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda	0.93 %
Microvirga arsenatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Chromadorea	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea	0.93 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.93 %
Microvirga arsenatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Rhabditida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida	0.93 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.93 %
Microvirga arsenatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Tylenchina	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina	0.93 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.93 %
Microvirga arsenatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Panagrolaimomorpha	infraorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha	0.93 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.93 %
Microvirga arsenatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Strongyloidoidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea	0.93 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.93 %
Microvirga arsenatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Strongyloididae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae	0.93 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.93 %
Microvirga arsenatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Parastrongyloides	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides	0.93 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.93 %
Microvirga arsenatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.19 %
Parastrongyloides trichosuri	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides → Parastrongyloides trichosuri	0.93 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.93 %
Microvirga arsenatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101987052	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300000652\|ARCol0yngRDRAFT_1016535	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300004114\|Ga0062593_101531437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	720	Open in IMG/M
3300004156\|Ga0062589_102411334	Not Available	543	Open in IMG/M
3300004643\|Ga0062591_100484630	Not Available	1056	Open in IMG/M
3300004801\|Ga0058860_11880116	Not Available	804	Open in IMG/M
3300005330\|Ga0070690_100392365	Not Available	1017	Open in IMG/M
3300005332\|Ga0066388_102921796	Not Available	873	Open in IMG/M
3300005332\|Ga0066388_104870618	Not Available	683	Open in IMG/M
3300005332\|Ga0066388_105348928	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300005354\|Ga0070675_101310313	Not Available	667	Open in IMG/M
3300005459\|Ga0068867_100610673	Not Available	952	Open in IMG/M
3300005530\|Ga0070679_100274328	All Organisms → cellular organisms → Bacteria	1640	Open in IMG/M
3300005535\|Ga0070684_101752060	Not Available	586	Open in IMG/M
3300005614\|Ga0068856_101889420	Not Available	608	Open in IMG/M
3300005713\|Ga0066905_100148490	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300005713\|Ga0066905_101873121	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005764\|Ga0066903_100553190	All Organisms → cellular organisms → Bacteria	1974	Open in IMG/M
3300005764\|Ga0066903_102045015	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides → Parastrongyloides trichosuri	1101	Open in IMG/M
3300005764\|Ga0066903_102321905	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300005764\|Ga0066903_104934191	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300005764\|Ga0066903_108259434	Not Available	532	Open in IMG/M
3300006059\|Ga0075017_101439548	Not Available	542	Open in IMG/M
3300006162\|Ga0075030_100648177	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300006172\|Ga0075018_10345429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	745	Open in IMG/M
3300006175\|Ga0070712_101516524	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300006871\|Ga0075434_100892707	Not Available	904	Open in IMG/M
3300009094\|Ga0111539_11189136	Not Available	886	Open in IMG/M
3300009148\|Ga0105243_12067356	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300009156\|Ga0111538_11520350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	844	Open in IMG/M
3300009162\|Ga0075423_10395448	Not Available	1450	Open in IMG/M
3300010046\|Ga0126384_11575769	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300010047\|Ga0126382_10659357	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300010362\|Ga0126377_10196422	All Organisms → cellular organisms → Bacteria → Proteobacteria	1930	Open in IMG/M
3300010366\|Ga0126379_10451674	Not Available	1347	Open in IMG/M
3300010366\|Ga0126379_12929793	Not Available	571	Open in IMG/M
3300010396\|Ga0134126_13038610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300012882\|Ga0157304_1005790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1243	Open in IMG/M
3300012910\|Ga0157308_10327327	Not Available	571	Open in IMG/M
3300012955\|Ga0164298_10104564	All Organisms → cellular organisms → Bacteria → Proteobacteria	1506	Open in IMG/M
3300012958\|Ga0164299_10529192	All Organisms → cellular organisms → Bacteria → Proteobacteria	790	Open in IMG/M
3300012960\|Ga0164301_10009892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3797	Open in IMG/M
3300012984\|Ga0164309_10230985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1292	Open in IMG/M
3300012984\|Ga0164309_10509297	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300012984\|Ga0164309_10907180	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300012984\|Ga0164309_11302463	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300012984\|Ga0164309_11447692	Not Available	587	Open in IMG/M
3300012986\|Ga0164304_10150788	Not Available	1464	Open in IMG/M
3300012988\|Ga0164306_10268319	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300012988\|Ga0164306_11609773	Not Available	560	Open in IMG/M
3300012989\|Ga0164305_11195685	Not Available	658	Open in IMG/M
3300013307\|Ga0157372_11294846	Not Available	841	Open in IMG/M
3300014325\|Ga0163163_12063908	Not Available	630	Open in IMG/M
3300014968\|Ga0157379_12127695	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300015371\|Ga0132258_11705189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1589	Open in IMG/M
3300015374\|Ga0132255_102263496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	829	Open in IMG/M
3300016319\|Ga0182033_10214818	All Organisms → cellular organisms → Bacteria	1539	Open in IMG/M
3300016319\|Ga0182033_10511026	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300016319\|Ga0182033_12042446	Not Available	522	Open in IMG/M
3300016357\|Ga0182032_10384151	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300016357\|Ga0182032_10971589	Not Available	724	Open in IMG/M
3300016387\|Ga0182040_10799525	Not Available	777	Open in IMG/M
3300016422\|Ga0182039_10109760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2057	Open in IMG/M
3300016422\|Ga0182039_10855221	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300016445\|Ga0182038_10333524	Not Available	1251	Open in IMG/M
3300017823\|Ga0187818_10171816	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300017943\|Ga0187819_10437759	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300017943\|Ga0187819_10746779	Not Available	551	Open in IMG/M
3300017994\|Ga0187822_10205008	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300018032\|Ga0187788_10503001	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300020579\|Ga0210407_10581084	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300022737\|Ga0247747_1023576	Not Available	688	Open in IMG/M
3300023261\|Ga0247796_1060693	Not Available	673	Open in IMG/M
3300025899\|Ga0207642_10713184	Not Available	633	Open in IMG/M
3300025907\|Ga0207645_10696074	Not Available	691	Open in IMG/M
3300025915\|Ga0207693_11150305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	587	Open in IMG/M
3300025923\|Ga0207681_11097079	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300025961\|Ga0207712_10428202	Not Available	1118	Open in IMG/M
3300026089\|Ga0207648_10582098	Not Available	1030	Open in IMG/M
3300026898\|Ga0207788_1027386	Not Available	503	Open in IMG/M
3300027252\|Ga0209973_1027478	Not Available	788	Open in IMG/M
3300027680\|Ga0207826_1178610	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300027907\|Ga0207428_10526972	Not Available	856	Open in IMG/M
3300027910\|Ga0209583_10194012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300027911\|Ga0209698_10590773	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300027952\|Ga0209889_1053560	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300027957\|Ga0209857_1091304	Not Available	510	Open in IMG/M
3300028379\|Ga0268266_11220266	Not Available	727	Open in IMG/M
3300028592\|Ga0247822_10905176	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300028889\|Ga0247827_11179887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	530	Open in IMG/M
3300031716\|Ga0310813_10261997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1444	Open in IMG/M
3300031747\|Ga0318502_10817918	Not Available	565	Open in IMG/M
3300031833\|Ga0310917_10412934	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300031879\|Ga0306919_10194967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1503	Open in IMG/M
3300031890\|Ga0306925_11291648	All Organisms → cellular organisms → Bacteria → Proteobacteria	726	Open in IMG/M
3300031946\|Ga0310910_10503767	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300031949\|Ga0214473_11072020	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300031954\|Ga0306926_10068239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4297	Open in IMG/M
3300031954\|Ga0306926_13025407	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300032063\|Ga0318504_10515727	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300032068\|Ga0318553_10424780	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300032075\|Ga0310890_10615491	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300032076\|Ga0306924_12300679	Not Available	546	Open in IMG/M
3300032174\|Ga0307470_10491956	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300032205\|Ga0307472_101328205	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300033289\|Ga0310914_10646083	Not Available	952	Open in IMG/M
3300033551\|Ga0247830_10610771	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.50%
Host-Associated	Host-Associated	21.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.09%
Plants	Host-Associated → Plants	20.56%
Aquatic	Environmental → Aquatic	8.41%
Human	Host-Associated → Human	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.48%
Sediment	Environmental → Aquatic → Sediment	4.67%
Freshwater	Environmental → Aquatic → Freshwater	3.74%
Digestive System	Host-Associated → Human → Digestive System	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.40%
Loam	Environmental → Terrestrial → Soil → Loam	15.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.74%
Sand	Environmental → Terrestrial → Soil → Sand	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.67%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.74%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000652	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Col-0 young rhizosphere DNA	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026898	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79 (SPAdes)	Environmental	Open in IMG/M
3300027252	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1019870522	3300000364	Soil	MRYSLHEIDSHNVVATTAQLIVXKGRXEWFSEKLRLLLTFEGDPEAADYLLDEWHEGLLAALKTLPFPFS*
ARCol0yngRDRAFT_10165352	3300000652	Arabidopsis Rhizosphere	MRYSLHEIEKHHVLATTVAADRDDALECFSEKLRLMLTFEGDPVAAEYLIDEWPENLPPMAHTPNPTIPVF
Ga0062593_1015314373	3300004114	Soil	MRYGLHEIDKHHVVATTVATDRDEALEWFSEKLRLMLSFEGDPAEADYLLDEWPEG
Ga0062589_1024113341	3300004156	Soil	MRYSLHEIDTHHIVATTVAADRDEALDWFSEKLRLMLTFEGDPLAVEYLLDEWAES
Ga0062591_1004846302	3300004643	Soil	MMRYSLHEIDNPDVIATTIAADRDEALEWFSEKLRLMLTFEGDPADAEYLLDEWPEGLF
Ga0058860_118801162	3300004801	Host-Associated	MRYSLHEIDTHHIVATTVAVDRDEALDWFSEKLRLMLTFEGDPLAVEYLLDEWAESLPPVAHTSNP
Ga0070690_1003923651	3300005330	Switchgrass Rhizosphere	MRYSLHEIDKHQVVATTVAADRDEALESFSGKLRLMLSFEGDPAAAEYLLDEW
Ga0066388_1029217961	3300005332	Tropical Forest Soil	MVGSASKASMRYSLHNIDSRDVVATTIAADRDEALEWFSEKLRLMLTFQGDPDAAEYLLEER
Ga0066388_1048706181	3300005332	Tropical Forest Soil	MRYSLPEIDTHHVIATTVAANRDEALEWSSEKLRLMLTFEGEPHAAQYLLDEWAETETYPS*
Ga0066388_1053489282	3300005332	Tropical Forest Soil	MRYRLHEVDKHRIVAATVASDRDEALEWFSERLRLTLTFEGDPADADYLLRRGLTSSSTL
Ga0070675_1013103132	3300005354	Miscanthus Rhizosphere	MRYSLHEIDKHQVVATTVAADRDEALESFSGKLRLMLSFEGDPAAAEYLLDEWPDSLPYLAHTPK
Ga0068867_1006106733	3300005459	Miscanthus Rhizosphere	MRYSLHEIDKHQVVATTVAADRDEALESFSGKLRLMLSFEGDPAAAEYLLDEWPDSLPYLAHTPKPT
Ga0070679_1002743283	3300005530	Corn Rhizosphere	MRYSLHEIDNHRVVTTTVAADHDEALEWFSEKLRLMLTFEGDPVAADYLLEEWPESLPYMAHTSNP
Ga0070684_1017520601	3300005535	Corn Rhizosphere	MRYSLHEIDTHHIVATTVAADRDEALEWFSEKLRLMLTFEGDPRAAEYLLDEWAESLPLMAHTSNPTIPVF
Ga0068856_1018894201	3300005614	Corn Rhizosphere	MRYSLHEIDKHQVVATTVAADRDEALESFSGKLRLMLSFEGDPAAAEYLLDEWP
Ga0066905_1001484901	3300005713	Tropical Forest Soil	MRYTLHEIDSHNVVATTVATDRDEALEWFSEKLRLMLTFEGDPASADYLLGEYPESVPHMAHAG
Ga0066905_1018731212	3300005713	Tropical Forest Soil	MRYSLHEIDRHDVVATTVAADRDEALEWFSEKLRLMLSFEGDPGSADYLLDEWPEGVPYRAH
Ga0066903_1005531903	3300005764	Tropical Forest Soil	MRYNLHEIDSHDVVASTVAADRDEALEWFGQKLRLMLSFEGDPASADYLLD
Ga0066903_1020450153	3300005764	Tropical Forest Soil	MRYSLHEIDTHDVVATMVATDRDEALERFSEKLRLMLTFDGEPASADFLLDEVLEGLPYMAHTSKPTI
Ga0066903_1023219052	3300005764	Tropical Forest Soil	MRYSLHELDNHDVVATTIAADRDEALAWFSDKLRLMLTFEGDPADADYLLD
Ga0066903_1049341911	3300005764	Tropical Forest Soil	MRYSLHEIDDHDVVATTIAADRDEALAWFSDKLRLMLTFEGDPADADYLLD
Ga0066903_1082594342	3300005764	Tropical Forest Soil	MRYSLHEIYKDEVVATTDAADRDEALGWFSEKLLLMLTFEGDPADADYLLDEWPEGLL
Ga0075017_1014395481	3300006059	Watersheds	MRYSLHEIDNHHVVATTLAADRDEALEWFSEKLRVMLTFEGYPVAADYALDEWPEGLLAHTANPHHSGFH
Ga0075030_1006481772	3300006162	Watersheds	MRYSLHEIDKHHVVATTIAVDRDEALEWFSEKLRLMLTFEGDPLAAEYLVDEWPESLPYMATPQFRFS*
Ga0075018_103454291	3300006172	Watersheds	MRYSLHEIDTHDVVATTVAADRDEALEWFSEKLRLLLTFEGDPEAADYLLDEWHEG
Ga0070712_1015165241	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRYSLHEIDTHHIVATTVAADRDEALEWFSEKLRLMLTFEGDAASADYLLDE*
Ga0075434_1008927072	3300006871	Populus Rhizosphere	MRYSLHECDKHHVVATTVAADRDEALEWFSEKLRLMLTFEGDPASADYLLDEWPEGLPYMAHTPKPRFS*
Ga0111539_111891361	3300009094	Populus Rhizosphere	MRYSLHESDKHRVVATTVAADRDEALEWFSEKLRLMLTFEGVPASADYRLDEWPESLPHLAHAPNP
Ga0105243_120673562	3300009148	Miscanthus Rhizosphere	MMRYSLHEIDNPDVIATTIAADRDEALEWFSEKLRLMLTFEGDPADAEYLLDEWPEGLFARAASPTIPVF
Ga0111538_115203502	3300009156	Populus Rhizosphere	MRYSLHDIDRHDVVATTVAADRDEALEWFSEKLRLMLTFEGDPGSADYLLDEWPESLPYMAH
Ga0075423_103954482	3300009162	Populus Rhizosphere	MRYSLHEIDNHRVVTTTVADDHDEALEWFSEKLRLMLTFEGDPVAADYLLEEWPESLPYMAH
Ga0126384_115757691	3300010046	Tropical Forest Soil	MRYSLHEIDSHDVVATTIAADRDEALEWFSEKLRLMLTFEGDPAEADYLLDEWPERLL
Ga0126382_106593572	3300010047	Tropical Forest Soil	MHYSLHEVDNQDIVATTTAGDRDEALEWFSERLRLMLTFEGDPADAEYLLD
Ga0126377_101964222	3300010362	Tropical Forest Soil	MRYTLHEIDSHNVVATTVATDRDEALEWFSEKLRLMLTFEGEPASADYLLGEYPESCPTWHGEAYHS*
Ga0126379_104516741	3300010366	Tropical Forest Soil	MRYSLHEIDSHHIVATTVAADRDEALEWFSEKLRLMLTFEGDPLAAEYLLDEWPESLPYMVHTSNPTIPV
Ga0126379_129297931	3300010366	Tropical Forest Soil	MHYSLHEIDSHNVVAITVAVDRDEALEWFSRKLRLMLSFVGDPGSADYLLDEWPESLPYMAHTPKPTILVFV
Ga0134126_130386101	3300010396	Terrestrial Soil	MRYSLHEIDKHHAVAATVAADRDEALEWFSEKLRLMLTFEGDPVAAEYLLDEW
Ga0157304_10057903	3300012882	Soil	MRYSLHEIDTHHIVATTVAADRDEALDWFSEKLRLMLTFEGDSRAAEYLLDEWVESLPLMAHTSNPTIPVFV
Ga0157308_103273271	3300012910	Soil	MRYSLHEIDTHHIVATAVAADRDEALEWFSEKLRLMLTFEGDPLAAEYLLDEWAQSLPPMAHTSNPTIP
Ga0164298_101045642	3300012955	Soil	LDKHRVVATTVAADRDEALEWFSEKLRLMLTFEGDAASADYLLDE*
Ga0164299_105291922	3300012958	Soil	LDKHRVVATTVAADRDEALEWFSEKLRLMLTFEGDPASADYLLDE*
Ga0164301_100098922	3300012960	Soil	LDKDRVVATTVAADRDEALERFSEKLRLMLTFEGDAASADYLLDE*
Ga0164309_102309852	3300012984	Soil	MRYSLHEIDKHHVMATAIAADRDEALEWFSEKLHLMLTFEGDPVAANYLLDEWPEGLLAHTANPTNSGFRSERNSRTT
Ga0164309_105092973	3300012984	Soil	FHRIRFVLMRYSLHETDKHRVVATTVAADRDEALEWFSEKLRLMLTFEGDAASADYLLDE
Ga0164309_109071801	3300012984	Soil	MRYSLHEIDTHDIVAATVAADRDEALEWFSEKLRLMLTFEGDPVAAVYLLDEWAEGLLATPPFQFS*
Ga0164309_113024631	3300012984	Soil	MRYSLHEIDKHQVVATTVAADRDEALEWFSEKLRLMLTFEGDPASADYLLDEWPEGLP
Ga0164309_114476922	3300012984	Soil	VRSPIRRPDALHLHEIDNRHVVATTLAADRDEALEWFSEKLRVMLTFEGDPVAADYALDEWPEGLLAHTANPTIP
Ga0164304_101507882	3300012986	Soil	MRYSLHEIDNHHVVATTLAADRDEALEWFSEKLRVMLTFEGDPVAADYALDEWPEGLLAHTANPHHSGF
Ga0164306_102683192	3300012988	Soil	LDKDRVGATTVAADRDEALERFSEKLRLMLTFEGDAASADYLLDE*
Ga0164306_116097731	3300012988	Soil	MRYSLHEIDKHHVVAVTVAADRDEALEWFSEKPRLMRTFEGDPVAADYLLDERPEGLPYMAHTPNPTIPVFVVS
Ga0164305_111956852	3300012989	Soil	MRYSLHEIDKHHVVAVTVAADRDEALEWFSEKLRLMLTFEGDPVAADYLLDERPEGLPYMAHTP
Ga0157372_112948461	3300013307	Corn Rhizosphere	MRYSLHEIDKHHVLATTIAVDRDEALEWFSEKLRLMLTFDGDPVAADYVLDEWPEG
Ga0163163_120639082	3300014325	Switchgrass Rhizosphere	MRYSLHEIDTHHIVATTVAADRDEALEWFSEKLRLMLTFEGDSRAAEYLLDEWAESLPLMAHTSNP
Ga0157379_121276951	3300014968	Switchgrass Rhizosphere	MMRYSLHEIDNPDVIATTIATDRDEALEWFSEKLRLMLTFEGDPADAEYLLDEWPEGLFA
Ga0132258_117051893	3300015371	Arabidopsis Rhizosphere	MHYSLHEIDQHQVVATTIAPDRDEALEWFSEKLRLMLTFEGDPVSADYLLDEWPEGLLAHTQKPTIRCS*
Ga0132255_1022634962	3300015374	Arabidopsis Rhizosphere	MRYSLHEIDKHHVLATTVAADRDEALEWFSEKLRVMLTFEGDPGAADYLLDEWPEGLLAHSANPTIAVFVVR
Ga0182033_102148181	3300016319	Soil	MRYSLHEIDKHHVVATTVASDRDEALEWFSEKLRLMLTLEGDPADADYLPDD
Ga0182033_105110261	3300016319	Soil	MRYSLHEINSHEVVATTMAVDRDDALEWFSEKLRLMLTFEGDPADADYLLDEWPEG
Ga0182033_120424461	3300016319	Soil	MRYSLHEIDKDHVVATTDAADRDEALEWFSEKLRLMLTFEGDPAEADYLLDE
Ga0182032_103841511	3300016357	Soil	MRYSFHEIDNHHVVATTVASDRDEALEWFSEKLRSMLTLEGDPADADYLLDEWPEGLLAQAANPTIPVLL
Ga0182032_109715892	3300016357	Soil	MRYSLHEIDTHHIVATTVAADRDEALEWFSEKLRLMLTFDGDPLAAEYLLDEWPESLPHM
Ga0182040_107995251	3300016387	Soil	MRYSLHEIDKHYIVATTVASDREEALEWFSEKLRLMLTFEGDPADAEYLLDEWPEG
Ga0182039_101097601	3300016422	Soil	MRYSLHEIDTNHIVATTVAADPDEALEWFSEKLRLMLTFEGDPLAAEYLLDEWPESLPHMAHTAKPTIPVFIVNA
Ga0182039_108552211	3300016422	Soil	MGYSLHEIDSHDVVATTVAADRDEALEWFSEKLRLMLTLEGDPAFADYLL
Ga0182038_103335243	3300016445	Soil	MRYSLHELDNHDVVATTSAANRDEALEWFSEKLRLMLTFEGDPPEADYLLDE
Ga0187818_101718162	3300017823	Freshwater Sediment	MRYSLHEIDTHRVVTTTVATDRDEALEWFSEKLRLMLTFEGDPVAADYLLDEWPESLPYM
Ga0187819_104377591	3300017943	Freshwater Sediment	MRYSLHEIDRHDVVAATVAADRDEALEWFSEKLRLMMTFEGDPACADYLLDEWPESLPYM
Ga0187819_107467792	3300017943	Freshwater Sediment	MRYSLHEIDKHHVVATTGAADRDEALEWFSEKLRLILTFEGDPVAAGYLLDERPESLPHLAHTPNP
Ga0187822_102050082	3300017994	Freshwater Sediment	MRYSLHEIDNHRVVTTTVAADRDEALEWFSEKLRLMLTFEGDPIAADYLLDEWPESLPYMART
Ga0187788_105030011	3300018032	Tropical Peatland	MRYSLHEIDTHHVVATTIAVDRDEALEWFSQKLRVMLTFEGDPLIADYPLDEWPESLPYMAHTSNPAFRFS
Ga0210407_105810841	3300020579	Soil	MRYSLHEIDNHHVVATTLAADRDEALEWFSEKLRVMLTFEGDLVAADYALDEWPEGLLAHTANPTIPVS
Ga0247747_10235761	3300022737	Soil	MRYSLHEIDTHHIVATTVAADRDEALDWFSEKLRLMLTFEGDPLAVEYLLDEWAESLPPVAHTSNPTIPVFV
Ga0247796_10606931	3300023261	Soil	MRYSLHEIDTHHIVATTVAADRDEALDWFSEKLRLMLTFEGDPLAVEYLLDEW
Ga0207642_107131842	3300025899	Miscanthus Rhizosphere	MRYSLHEIDTHHIVATTVAVDRDEALDWFSEKLRLMLTFEGDPLAVEYLLDEWAESLPPVAHTS
Ga0207645_106960741	3300025907	Miscanthus Rhizosphere	MRYSLHEIDNHRVVTTTVAADHDEALEWFSEKLRLMLTFEGDPVAADYLLEEWPES
Ga0207693_111503051	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRYSIHEIDKHHVMATTVAADRDEALEWFSEKLHLMLTFEGDPVAANYLLDEWPEGLLA
Ga0207681_110970791	3300025923	Switchgrass Rhizosphere	MMRYSLHEIDNPDVIATTIAADRDEALEWFSEKLRKMLTFEGDLSSADYLLD
Ga0207712_104282022	3300025961	Switchgrass Rhizosphere	MMRYSLHEIDNPDVIATTIAADRDEALEWFSEKLRLMLTFEGDPADAEYLLDEWPEGLFARAASPTIPVFVVS
Ga0207648_105820982	3300026089	Miscanthus Rhizosphere	MRYSLHEIDKHQVVATTVAADRDEALESFSGKLRLMLSFEGDPAAAEYLLDEWPDSLPYLAHTPKPTIPIFVVR
Ga0207788_10273862	3300026898	Tropical Forest Soil	MRYSLHETDRHDVVATTVAADRDEALEWFSEKLRLMLTFEGDSAAADYLLDEWSESRPYMTTPQSPPIRFS
Ga0209973_10274782	3300027252	Arabidopsis Thaliana Rhizosphere	MRYSLHEIDRHDVLATTVAADRDEALEWFSEKLRLMLTFEGDPGSADYLLDEWPEGLPYMAHTPRPTI
Ga0207826_11786101	3300027680	Tropical Forest Soil	MRYSLHEIDGHDVLATTVATDRDEALEWFSEKLRMMLTFEGDPSSADYLLD
Ga0207428_105269722	3300027907	Populus Rhizosphere	MRYSLHESDKHRVVATTVAADRDEALEWFSEKLRLMLTFEGDPASADYRLDEWPESLP
Ga0209583_101940123	3300027910	Watersheds	MRYSLHESDKHRVVATTVAADRDEALEWFSEKLRVMLTLEGDPASADYLLDEWPEGLPYM
Ga0209698_105907732	3300027911	Watersheds	MRYSLHEIDKHHVVATTIAVDRDEALEWFSEKLRLMLTFEGDPLAAEYLVDEWPESLPYMATPQFRFS
Ga0209889_10535602	3300027952	Groundwater Sand	MRYSLHEIDKHHVVATTVAADRDEALEWFSEKLRLMLTFEGDPVAAEYLLDEWPESLPYMAHT
Ga0209857_10913041	3300027957	Groundwater Sand	MRYSLHEIDGHDVIATTVATDRDEALEWFSEKLRMMLTFEGDPSSADYLLDEWPEA
Ga0268266_112202661	3300028379	Switchgrass Rhizosphere	MRYSLHEIDNHRVVTTTVAADHDEALEWFSEKLRLMLTFEGDPVAADYLLEEWPESLP
Ga0247822_109051761	3300028592	Soil	MRYSLHETDTHDVVATTVATDRDEALERFSEKLRLMLTLEGDPASADFLLDEALEGLPYMVH
Ga0247827_111798872	3300028889	Soil	MRYSLHHIDNHDVVATTIAADRDEAFEWFSEKLRLMLTFEGDPADAEYLLDEWPEGLLAH
Ga0310813_102619972	3300031716	Soil	MRYSLHEIDTHHVVATTVAVDRDEALEWFSEKLRLMLTFEGDPADADYLLDEWPEGLLAHAASPPFQFS
Ga0318502_108179181	3300031747	Soil	MRYSLHEIDTHHIVATTVAADRDEALEWFSEKLRLMLTFEGDPLAAEYLLDEWPESLPHIAHT
Ga0310917_104129343	3300031833	Soil	MHYSLHEIDSHNVLATTVAADRDEALEWFSEKLRLMLSFEGDPGSADYLLDEWSEGLPHKAHTPK
Ga0306919_101949673	3300031879	Soil	MRYSLHEIDGHDVVTTTVAADRDEALEWFSEKLRLMLTFVGDPGSADYLLDE
Ga0306925_112916482	3300031890	Soil	MRYGLHEIDSNDVVATTVAADRDEALECFSQKLRLMLTFEGDPASAEYLLDEWSES
Ga0310910_105037671	3300031946	Soil	MRYSLHEIDKHHVVATTVASDRDEALEWFSEKLRSMLTLEGDPADADYLLDEWPEGLLAQAANP
Ga0214473_110720201	3300031949	Soil	MRVCLMRYSLHEIDKHHVVATTVAADRDEALEWFSEKLRLMLTFEGDPVAAEYLLDEWPETLPYMAHTP
Ga0306926_100682393	3300031954	Soil	MRYSLHEIDGHDVVTTTVAADRDEALEWFSEKLRLMLTFEGEPGSADYLLDE
Ga0306926_130254071	3300031954	Soil	MRYSFHEIDNHHVVATTVASDRDEALEWFSEKLRLMLTLEGDPADADYLPDERPEGLLAQAANPT
Ga0318504_105157272	3300032063	Soil	MRYSLHEIDGHDVVTTTVAADRDEALEWFSEKLRLMLTFEGDPGSADYLFDEWPEGLALHGTH
Ga0318553_104247801	3300032068	Soil	MRYSLHEIDKHHVVATTVASDRDEALEWFSEKLRSMLTLEGDPADADYLLDEWPEGLLAQAANPTIPVLL
Ga0310890_106154911	3300032075	Soil	MRYSLHETDKHRVVATTIAADRDEALEWFSEKLRMMLTFEGDPSSAHYLLDEWPEALLAHDANPTIPV
Ga0306924_123006792	3300032076	Soil	MRYSLHEIDGHDVVATTVAADRDEALEWFSEKLRLMLTFEGDPGSADYLLDEWPEGLPYMAHTPKPTIPVFV
Ga0307470_104919562	3300032174	Hardwood Forest Soil	LDKDRVVATTVAADRYEALERFSEKLRLILTFEGDAASADYLLDE
Ga0307472_1013282051	3300032205	Hardwood Forest Soil	MRYSLHETDKHRVVATTVAADRDEALEWFSEKLRLMLTFEGDPVAADYVLDEWPEGLLAH
Ga0310914_106460832	3300033289	Soil	MRYSLHEIDKHYIVATTVASDREEALEWFSEKLRLMLTLEGDPTNAEYLLDE
Ga0247830_106107711	3300033551	Soil	MRYSLYEIDRHDVLATTVAADRDEALQWFSEKLRLMLSFEGDPVAADYLLDEWPEGLLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092654

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences