NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F092536

Metagenome / Metatranscriptome Family F092536

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092536
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 46 residues
Representative Sequence MKRPKKGRPRIEDRARTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Number of Associated Samples 61
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 49.53 %
% of genes near scaffold ends (potentially truncated) 39.25 %
% of genes from short scaffolds (< 2000 bps) 81.31 %
Associated GOLD sequencing projects 54
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.355 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(51.402 % of family members)
Environment Ontology (ENVO) Unclassified
(47.664 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(83.178 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.
1JGIcombinedJ13530_1025839551
2JGI12659J15293_100012867
3JGI12659J15293_100027308
4JGI12635J15846_101929685
5JGIcombinedJ26739_1003317273
6JGIcombinedJ51221_101531142
7Ga0062389_1040476021
8Ga0058899_115912171
9Ga0062388_1013636823
10Ga0070711_1020083451
11Ga0070734_100260075
12Ga0070761_110024341
13Ga0070762_101795172
14Ga0070762_106122801
15Ga0070762_109563731
16Ga0070763_100961062
17Ga0070763_106540922
18Ga0070764_105150701
19Ga0070766_112702012
20Ga0075017_1011244982
21Ga0075014_1003277721
22Ga0070765_1012587123
23Ga0070765_1014860722
24Ga0070765_1020500721
25Ga0150983_134143911
26Ga0153951_10241622
27Ga0153933_10968393
28Ga0167644_10246252
29Ga0187872_103381751
30Ga0210407_100157178
31Ga0210403_100945663
32Ga0210403_108880191
33Ga0210399_103804042
34Ga0210399_108875502
35Ga0210399_110232502
36Ga0210395_100816144
37Ga0210395_101412402
38Ga0210395_102010614
39Ga0210395_105183363
40Ga0210395_105478601
41Ga0210395_107468453
42Ga0210401_109161652
43Ga0210406_101402376
44Ga0210406_102370482
45Ga0210406_104707611
46Ga0210400_111045472
47Ga0210405_108811232
48Ga0210405_111236431
49Ga0210408_100433803
50Ga0210408_101158691
51Ga0210408_102093872
52Ga0210408_103854332
53Ga0210408_103939191
54Ga0210408_105464072
55Ga0210408_113162132
56Ga0210396_100167701
57Ga0210396_107969771
58Ga0210396_113336983
59Ga0213876_1000815110
60Ga0210393_102416792
61Ga0210393_107735613
62Ga0210393_111886431
63Ga0210393_112191352
64Ga0210393_112582092
65Ga0210385_105407413
66Ga0210385_111051231
67Ga0210387_110049262
68Ga0210387_110811531
69Ga0210387_114237602
70Ga0210386_109555713
71Ga0210386_109672951
72Ga0210386_117927711
73Ga0210394_115066432
74Ga0210394_117824182
75Ga0210384_110869491
76Ga0210392_100581933
77Ga0210392_112995011
78Ga0210398_105860711
79Ga0210398_113305481
80Ga0210410_102731041
81Ga0210410_108252592
82Ga0210410_108899721
83Ga0210409_113312692
84Ga0242658_10840901
85Ga0242666_11771762
86Ga0209060_102311941
87Ga0209169_100481922
88Ga0209169_107219921
89Ga0209275_105072761
90Ga0209380_100720993
91Ga0209380_101863362
92Ga0209624_1000126317
93Ga0209006_101328372
94Ga0209006_104090502
95Ga0209006_114144822
96Ga0265753_11049361
97Ga0170834_1041545362
98Ga0170820_125490192
99Ga0170818_1098664721
100Ga0307509_103229561
101Ga0310686_1106097673
102Ga0310686_1135268264
103Ga0310686_11359270828
104Ga0316219_12863471
105Ga0335074_100164676
106Ga0335074_100574405
107Ga0335072_107968922
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 37.84%    β-sheet: 0.00%    Coil/Unstructured: 62.16%
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51015202530354045MKRPKKGRPRIEDRARTIEARKPWLKLEMSRRTWYRRQAEKRKGRESequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
33.6%66.4%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater
Peatland
Bog Forest Soil
Wetland
Watersheds
Soil
Glacier Forefield Soil
Surface Soil
Soil
Forest Soil
Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Plant Roots
Ectomycorrhiza
Attine Ant Fungus Gardens
3.7%51.4%2.8%2.8%10.3%15.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ13530_10258395513300001213WetlandPMSLLKAKVGRPLNSQRHLTAEATKPWENLGMSRRTWYRRQIEKKGRP*
JGI12659J15293_1000128673300001546Forest SoilMKRPKKGRPRIEDRARTIEARKPWLKLGMSRRTWYRREAEKRKGRE*
JGI12659J15293_1000273083300001546Forest SoilMKRARKGGPRIEDRAKTIEARKPWLKLNMSRRTWYRRQAEKRKGRE*
JGI12635J15846_1019296853300001593Forest SoilMDLKRPKTGRPRIEDRANTNEARKPWLKLSMSRRTWYRRQAEKRKGRDASICK*
JGIcombinedJ26739_10033172733300002245Forest SoilVALVDVRGLSGGLNVKMTEQRARKGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE*
JGIcombinedJ51221_1015311423300003505Forest SoilKTGRPRIEDRARTIEARKPWLKLEMSRRTWYRRQAERRTKGQQ*
Ga0062389_10404760213300004092Bog Forest SoilLGLHLQHRAPMTQPSKGRPRIEDRAKTIEAKEPWLKLEMSRRTWYRRQAEKRKGRE*
Ga0058899_1159121713300004631Forest SoilMKRARKGRPRIEDRANTIEARKPWLKLGMSRRTWYRRQAEKRKGRE*
Ga0062388_10136368233300004635Bog Forest SoilMNRRKAGCPRIENRANTNEAKKPWLKLGMSRTTWYRRQAEQRKGRE
Ga0070711_10200834513300005439Corn, Switchgrass And Miscanthus RhizosphereKKGRPRIEDRARTIEAKKPWLKLNMSRRTWYRRQAERRQGRE*
Ga0070734_1002600753300005533Surface SoilMKRPKKGRPRIEHRGQTIESKKPWLKLCMSRRTWYRRQAEKRKGRE*
Ga0070761_1100243413300005591SoilMNRAPNKGRPRIEDRANTIEAKKPWLKLEMSRRTWYRRQAEKRKGRE*
Ga0070762_1017951723300005602SoilMRRAPKKGRPRIEDRARTIEARAPWLKLGMSRRTWYRRQAEKRKAAAGIEVSL*
Ga0070762_1061228013300005602SoilKKGRPRIEDRANTLEAKKPWLKLEMSRRTWYRRQAEKRKGRE*
Ga0070762_1095637313300005602SoilIEDRAKTIEARQPWLKLGMSRRTWYRRQAEKRALSGPSEASI*
Ga0070763_1009610623300005610SoilMSQAEQRRKTGRPRLEDIGKTNEAKKPWLKLGMSRRTWYYRQAEKRKGRE*
Ga0070763_1065409223300005610SoilMKPRKKGRPRIEDRARTIEAKKPWLKLEMSRRTWYRRQAEKREGRE*
Ga0070764_1051507013300005712SoilMGPMKPRKKGRPRIEDRARTIEAKKPWLKLCMSRRTWYRRQAEKRKGRAIQAAA*
Ga0070766_1127020123300005921SoilKGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEQRKGRE*
Ga0075017_10112449823300006059WatershedsMTQPRKTGRPRIEERHKTNEAKKPWLKLEMSRRTWYRRQAEQRKGRE*
Ga0075014_10032777213300006174WatershedsMKRARKGRPRIEDRTNTNEAKKPWLKLEMSRRTWYRRQAERRARG
Ga0070765_10125871233300006176SoilRRKTGRPRIEERHLTNEARKPWLKLEMSRRTWYRRQAEKRKGRE*
Ga0070765_10148607223300006176SoilLNVKMTEQRARKGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE*
Ga0070765_10205007213300006176SoilMRRSPKKGRPRIEERHKTVEARKPWLKLEMSRRTWYRRQA
Ga0150983_1341439113300011120Forest SoilMKPRKKGRPRIEDRARTIEAKKPWFKLGMSRRTWYRRQAEKREGQIG
Ga0153951_102416223300011404Attine Ant Fungus GardensMKRPKKGRPRIEDRARTIEARKPWLKLGMSRRTWYRRQAEKRKGRE*
Ga0153933_109683933300011411Attine Ant Fungus GardensMKRPKKGRPRIEDRARTIEARKPWLKLEMSRRTWYRRQAEKRKGRE*
Ga0167644_102462523300015206Glacier Forefield SoilMKRARKGRPRIEARPNTNEARKPWLKLEMSRRTWYRRQAEKRKSQE*
Ga0187872_1033817513300018017PeatlandMRKKGRPRLEDRGKTLAAKKPWEKLGMSRRTWYRRRAERMMKTI
Ga0210407_1001571783300020579SoilMNARRKGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210403_1009456633300020580SoilMNARRKGRPRIEDRAKTIEARKPWLKLEMSPRTWYRRQAEKRKGRE
Ga0210403_1088801913300020580SoilMKRARKGRPRIEDRANTNEARKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210399_1038040423300020581SoilMNARRKGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGR
Ga0210399_1088755023300020581SoilVALVDVRGLSGGLNVKMTEQRARKGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210399_1102325023300020581SoilKPIKGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKAAAGIEVSL
Ga0210395_1008161443300020582SoilMKPRKKGRPRIEDRARTIEAKKPWLKLEMSRRTWYRRQAEKREGRE
Ga0210395_1014124023300020582SoilMSQAEQRRKTGRPRLEDIGKTNEAKKPWLKLGMSRRTWYYRQAEKRKGRE
Ga0210395_1020106143300020582SoilVKPKKGRPRIEDRANTNEARQPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210395_1051833633300020582SoilMNARRKGRPRIEDRAKTIEARASWLKLEMSRRTWYRRQAEKRKGRE
Ga0210395_1054786013300020582SoilPRKKGRPRIEDRARTIEARKPWLKLEMSRRTWYRRQAEKRAGRAVR
Ga0210395_1074684533300020582SoilMKRPKKGRPRIEDRARTIEARKPWLKLGMSRRTWYRREAEKRKGRE
Ga0210401_1091616523300020583SoilVSQAEQRRKTGRPRIEDRAKTNEAKKPWLKLEMSRRTWYRRQAEKREKGQQ
Ga0210406_1014023763300021168SoilMKRARKGGPRIEERHLTNEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210406_1023704823300021168SoilMARCKTGRPRIEDRANTTEARKPWLKLNMSRRTWYRRQAEKRKGRE
Ga0210406_1047076113300021168SoilMTEHRTTKGRPRIEDRAKTIEAKRPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210400_1110454723300021170SoilAEQRRKTGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGREA
Ga0210405_1088112323300021171SoilLNVKMTEQRARKGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210405_1112364313300021171SoilGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210408_1004338033300021178SoilMRRAPKKGRPRIEDRARTIEARAPWLKLGMSRRTWYRRQAEKRKAAAGIEVSL
Ga0210408_1011586913300021178SoilMKPPKKGRPRIEDRAKTIEVRKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210408_1020938723300021178SoilMRRRKPGGPRIEDRAKTIEARQPWLKLGMSRRTWYRRQAEKRALSGPSEASI
Ga0210408_1038543323300021178SoilMVATRKTGRPRIEERHKTNEAKKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210408_1039391913300021178SoilMMKHAPKTGRPRIEDRANTIEARKPWLKLEMSRRTWYRRQAEKRKGQGSWSDC
Ga0210408_1054640723300021178SoilMRMKPPKKGRPRIEDRAQTIEAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0210408_1131621323300021178SoilQRARKGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210396_1001677013300021180SoilEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210396_1079697713300021180SoilEDRANTIEARKPWLKLEMSRRTWYRRQAEKRAGRAVR
Ga0210396_1133369833300021180SoilPRIEDRAQTIEAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0213876_10008151103300021384Plant RootsMKRPKGGRPRIEERAKTNEAQKPWLKLGMSRRTWYRRQAEKRKGLE
Ga0210393_1024167923300021401SoilMAHRKTGRPRIEDRARTIEARKPWLKLEMSRRTWYRRQAERRTKGQQ
Ga0210393_1077356133300021401SoilRAMKRGRKGGPRIEERHLTNEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210393_1118864313300021401SoilMRRSPKKGRPRIEDRAKTNEAKKPWLKLEMSRRTWYRRQ
Ga0210393_1121913523300021401SoilMLMMSKRKTGRPRIEDVGKTNEAKKPWLKLEMSRRTWYRRQVEKREKTGS
Ga0210393_1125820923300021401SoilMKRLPKKGRPRIEDRAKTIEAKKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210385_1054074133300021402SoilMKRPKKGRPRIEDSARTNEARKPWLKLGMSRRTWYRREAEKRKGRE
Ga0210385_1110512313300021402SoilMGPMKPRKKGRPRIEDRARTIEAKKPWFKLGMSRRTWYRRQAEKREGQIG
Ga0210387_1100492623300021405SoilRPRIEDRAKTNEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210387_1108115313300021405SoilIQMKPAHKGRPRIEDRAKTIEARKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210387_1142376023300021405SoilMKRAKKDRPRIEDRARTIEAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0210386_1095557133300021406SoilKGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210386_1096729513300021406SoilVSQAEQRRKTGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGREA
Ga0210386_1179277113300021406SoilRIEDRAKTIEARAPWLKLNMSRRTWYRRQAEKRASRA
Ga0210394_1150664323300021420SoilMPQSRKTGRPRIEDRAKTIEAKKPWLKLEMSRRTWYRRQ
Ga0210394_1178241823300021420SoilMKRARKGRPRIEDRANTNEARKPWLKLGMSRRTWYRRQGR
Ga0210384_1108694913300021432SoilMKPPKKGRPRIEDRANTLEAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0210392_1005819333300021475SoilVRRAPKKGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210392_1129950113300021475SoilMARMRRAPKKGRPRIEDRARTIEARAPWLKLGMSRRTWYRRQAEKRK
Ga0210398_1058607113300021477SoilMMLQPRKTGRPRIEERANTIEAKKPWLKLEMSRRTWYRRQA
Ga0210398_1133054813300021477SoilRMMKRAPKKGRPRIEDRAKTIEARAPWLKLGMSRRTWYRRQAEKRAGRAVR
Ga0210410_1027310413300021479SoilMTSRKAGRPRIEDRAKTIEARAPWLKRGMSRRTWYR
Ga0210410_1082525923300021479SoilVPLGGEMRRLPKKGRPRIEDRANTIEARKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210410_1088997213300021479SoilMSLAFEALMKPARKGRPRIEDRANTIEARKPWLKLGMSRRTWCRRQAEKRAGRA
Ga0210409_1133126923300021559SoilPRIEDRARTIEAKKPWLKLEMSRRTWYRRQAEKREGRE
Ga0242658_108409013300022530SoilARKGRPRIEDRTNTNEAKKPWLKLEMSRRTWYRRQAERRARGSI
Ga0242666_117717623300022721SoilMKPRKNGRPRIEERANTIEAKKPWLKLEMSRRTWYRRQAK
Ga0209060_1023119413300027826Surface SoilMKRPKKGRPRIEHRGQTIESKKPWLKLCMSRRTWYRRQAEKRKGRE
Ga0209169_1004819223300027879SoilMKPRKKGRPRIEDRARTIEAKKPWFKLGMSRRTWYRRQAEKRAGRAVR
Ga0209169_1072199213300027879SoilEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0209275_1050727613300027884SoilRAKKGRPRIEDRANTNEARKPWLKLEMSRRTWYRRQAEKRALSGPSEASI
Ga0209380_1007209933300027889SoilMRRAPKKGRPRIEDRARTIEARAPWLKLGMSRRTWYRRQAEKREGRE
Ga0209380_1018633623300027889SoilMSQAEQRRKTGRPRLEDIGKTNEAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0209624_10001263173300027895Forest SoilMKRARKGGPRIEDRAKTIEARKPWLKLNMSRRTWYRRQAEKRKGRE
Ga0209006_1013283723300027908Forest SoilMKRPKKGRPRIEDSARTNEARKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0209006_1040905023300027908Forest SoilRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0209006_1141448223300027908Forest SoilTGRPRLEDRANTIEARKPWLKLGMSRRTWYRRQAEKRAGRAG
Ga0265753_110493613300030862SoilVKPKKGRPRIEDRANTNEARQPWLKLGMSRRTWYRRQAEA
Ga0170834_10415453623300031057Forest SoilMKPPKKGRPRIEDRAQTIDAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0170820_1254901923300031446Forest SoilMRRAPKKGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0170818_10986647213300031474Forest SoilMMRRPKKGRPRIEDRAKTIEARQPWLKLEMSRRTWYRPQAEKRKGRE
Ga0307509_1032295613300031507EctomycorrhizaGRPRLEEAGKTLEAVKPWEKKGMSRRTWYRRQREQREKVK
Ga0310686_11060976733300031708SoilMAIKAKTGRPRIEDRARTLEAKKPWLNLEMSRRTWYRRQAEKRTGGK
Ga0310686_11352682643300031708SoilMKPAPKTGRPRIEDRAKTIEARAPWLKLEMSRRTWYRRQAEKRKGRE
Ga0310686_113592708283300031708SoilMNQPRKAGRPRIEDRADTNEAEKPWLKLGMSRSTWYRRQAEQRKGRE
Ga0316219_128634713300031759FreshwaterPRIEDRAKTNEAKKPWLKIIDPITGKPMSRRTWYRRRAEKAATEKGK
Ga0335074_1001646763300032895SoilMKRPKRGGPRIEERPLTNEARKPWLKLGMSRRTWYRRQAEQRRGRE
Ga0335074_1005744053300032895SoilMKPPKKGRPRIEQRGQTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0335072_1079689223300032898SoilMKRPKRGGPRIEERPLTNEARKPWLKLGMSRRTWYRRQA


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