NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F092517

Metagenome Family F092517

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092517
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 43 residues
Representative Sequence AAETVKRARHAPAATSYEAATDDALARLEAVTELKTAWHPVGA
Number of Associated Samples 94
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 93.46 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (57.944 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(26.168 % of family members)
Environment Ontology (ENVO) Unclassified
(28.037 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.140 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.
1JGI10216J12902_1000915192
2JGI10216J12902_1195662101
3A10PFW1_103008671
4C688J35102_1209730954
5JGI25407J50210_101595022
6Ga0063455_1002235714
7Ga0062590_1025639952
8Ga0066674_104045302
9Ga0066685_107672502
10Ga0070683_1007832901
11Ga0070692_104931941
12Ga0070668_1018992451
13Ga0070663_1020736471
14Ga0070741_103143851
15Ga0070730_108398582
16Ga0070732_106788812
17Ga0070665_1012806383
18Ga0075030_1008586452
19Ga0075014_1007747762
20Ga0079222_118725032
21Ga0075431_1003779851
22Ga0075433_101513851
23Ga0075420_1019086702
24Ga0075434_1025909362
25Ga0073928_101268614
26Ga0073928_105006262
27Ga0075424_1021979371
28Ga0079219_107281402
29Ga0075435_1012970292
30Ga0116218_11595592
31Ga0126313_109245391
32Ga0126305_109162882
33Ga0126310_112939071
34Ga0134126_106996801
35Ga0134126_109787361
36Ga0134126_110127572
37Ga0134124_112339462
38Ga0134122_125452042
39Ga0153922_11134821
40Ga0150985_1106182801
41Ga0157302_103116712
42Ga0164242_104932192
43Ga0137410_114816442
44Ga0164298_104245861
45Ga0164307_101454083
46Ga0164307_114021572
47Ga0164306_105404122
48Ga0164306_107649961
49Ga0164305_111195162
50Ga0173483_103237201
51Ga0137409_111352002
52Ga0132258_100491951
53Ga0182041_118281632
54Ga0182035_120614172
55Ga0187777_100704133
56Ga0184621_102005811
57Ga0187774_112369161
58Ga0190265_105117683
59Ga0190268_119408953
60Ga0193598_10218841
61Ga0190264_100300871
62Ga0190264_113841461
63Ga0213875_105540091
64Ga0210397_106096172
65Ga0210397_110957201
66Ga0210398_111044482
67Ga0126371_135146511
68Ga0222622_100572621
69Ga0207685_100826331
70Ga0207660_109202671
71Ga0207706_113638182
72Ga0207678_117360642
73Ga0207702_119234991
74Ga0209472_11064062
75Ga0209074_104582091
76Ga0268266_113611653
77Ga0307321_10199123
78Ga0307276_102019662
79Ga0307301_102385612
80Ga0307315_102399541
81Ga0307315_103002741
82Ga0307320_103263541
83Ga0302231_105160851
84Ga0307284_104176991
85Ga0307305_102039132
86Ga0307289_100477881
87Ga0307289_103451911
88Ga0307289_103890322
89Ga0307278_102335751
90Ga0307300_100711981
91Ga0307300_103311912
92Ga0307277_101351871
93Ga0307304_101744731
94Ga0311370_115015092
95Ga0302325_125587171
96Ga0318538_107163042
97Ga0307469_122204022
98Ga0318494_102088852
99Ga0307410_119115731
100Ga0310892_106913711
101Ga0310900_106132351
102Ga0308175_1000050838
103Ga0308175_1028999802
104Ga0307409_1025911252
105Ga0318525_102559412
106Ga0335080_122666741
107Ga0335076_108751281
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.99%    β-sheet: 0.00%    Coil/Unstructured: 69.01%
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510152025303540AAETVKRARHAPAATSYEAATDDALARLEAVTELKTAWHPVGASequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
57.9%42.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Iron-Sulfur Acid Spring
Groundwater Sediment
Watersheds
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Compost
Serpentine Soil
Surface Soil
Peatlands Soil
Soil
Agricultural Soil
Permafrost
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Peatland
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Soil
Palsa
Arabidopsis Rhizosphere
Avena Fatua Rhizosphere
Corn Rhizosphere
Tabebuia Heterophylla Rhizosphere
Plant Roots
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Attine Ant Fungus Gardens
26.2%4.7%2.8%2.8%2.8%4.7%5.6%3.7%2.8%5.6%2.8%2.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10009151923300000956SoilTELDKLASETIKRTRHNSAATTYDEAVDNSLSRLEAVTELKTAWHPIGA*
JGI10216J12902_11956621013300000956SoilDRLAAETVKRARHAAPARTYDAATDDALARLEAVTELKTAWHPIGA*
A10PFW1_1030086713300001538PermafrostPELSAELDRLAAETIKRVRHRAAAPSYDAAVADSLERIESVTELKTAWHPVGA*
C688J35102_12097309543300002568SoilTELDKLASETIKRTRHSAAATSYDAAIADALNRLEAVTELKTAWHPIGA*
JGI25407J50210_1015950223300003373Tabebuia Heterophylla RhizosphereRLAADSVTRVRHAAATTSYEAGVADALGRLEAVVELKTAWHPVGA*
Ga0063455_10022357143300004153SoilLAAESVTRVRHSSPTTSYALATADNLARLEAVTELKTAWHPVGA*
Ga0062590_10256399523300004157SoilLAAESVTRVRHTTASTDYTTATADPLSRLEALTELKTAWHPVGA*
Ga0066674_1040453023300005166SoilTELDKLASETIKRTRHGSPATTYDEAVAAALTRLEAVTELKTAWHPIGA*
Ga0066685_1076725023300005180SoilELDRLAAETIKRVRHGAAATSYDEAVSDALSRIDALTELKTAWHPIGA*
Ga0070683_10078329013300005329Corn RhizosphereLDRLAAETVKRTRHGAAAGTYEAATDDALARLEAVTELKTAWHPIGA*
Ga0070692_1049319413300005345Corn, Switchgrass And Miscanthus RhizosphereLAAESVTRVRHTMASTGYAAATADPLSRLEALTELKTAWHPVGA*
Ga0070668_10189924513300005347Switchgrass RhizosphereESVDRLASESVTRVRRAAPTRSYEAAIADALTRLEAVTELKTAWHPIGA*
Ga0070663_10207364713300005455Corn RhizosphereAAETVKRARHAPAATSYEAATDDALARLEAVTELKTAWHPVGA*
Ga0070741_1031438513300005529Surface SoilADLDRLASETIKRVRHAHATRGYDTAVTDSLARIEAVTELKTAWHPVGA*
Ga0070730_1083985823300005537Surface SoilTELDKLAAETIKRVRHRVAATSYEDATGDALERLHAVTELKTAWHPVGA*
Ga0070732_1067888123300005542Surface SoilSETIKRARHPEAATSYEAAVADALERLEAVTELKTAWHPVGA*
Ga0070665_10128063833300005548Switchgrass RhizosphereETIKRARHSAGATTYDEATGNALTRLEAVTELKTAWHPIGA*
Ga0075030_10085864523300006162WatershedsELGAELDRLGAETIKRVHHRRPAHTYDDAVADALERIEGVSELKTAWHPIGA*
Ga0075014_10077477623300006174WatershedsHSVAATTYEAATDDALERIEAVTELKTAWHPVGA*
Ga0079222_1187250323300006755Agricultural SoilVRHGAAATGYEDATGDALERLEAVTELKTAWHPVGA*
Ga0075431_10037798513300006847Populus RhizosphereAESVTRVRHADPTRSYALATSDALARLEAVTELKTAWHPVGA*
Ga0075433_1015138513300006852Populus RhizosphereAESVTRVRHTDAPNDYAAATADPLSRLEALTELKTAWHPVGA*
Ga0075420_10190867023300006853Populus RhizosphereREQVDRLAAESVTRVRHCQPSASYDAATADALTRLEAVTELKTAWHPVGA*
Ga0075434_10259093623300006871Populus RhizosphereELDGLAAETIKRVRHGSGAESYAAAVDDALERIEAVTELKTAWHPVGA*
Ga0073928_1012686143300006893Iron-Sulfur Acid SpringLASETIKRTRHSAAATSYADAVDDALDRLVAVTELKTAWHPVGA*
Ga0073928_1050062623300006893Iron-Sulfur Acid SpringAAGEPELSAELDRLASETIKRVRHTTAARDYELAVADALGRIDALTELKTAWHPVGA*
Ga0075424_10219793713300006904Populus RhizosphereKRTRHNSAATTYDEAVDNSLSRLEAVTELKTAWHPIGA*
Ga0079219_1072814023300006954Agricultural SoilSAALDRLAAETIKRVRHGSAATSYAAAVDDALERIEATVELKTAWHPVGA*
Ga0075435_10129702923300007076Populus RhizosphereIKRVRHGSGAESYAAAVDDALERIEAVTELKTAWHPVGA*
Ga0116218_115955923300009522Peatlands SoilAELDRLAAETIKRVRHGAAATGYEGATDDALDRLEAVTELKTAWHPVGA*
Ga0126313_1092453913300009840Serpentine SoilRVRHTTPSESYADATSDPLSRLEALTELKTAWHPVGA*
Ga0126305_1091628823300010036Serpentine SoilVRHAAPTGSYAEATGDPLSRLEAVTELKTAWHPVGA*
Ga0126310_1129390713300010044Serpentine SoilAESVTRVSHTAAATSYETATADPLSRLEALTELKTAWHPVGA*
Ga0134126_1069968013300010396Terrestrial SoilETIKRVRHADAAMSYEDATGDALERLHAVTELKTAWHPVGA*
Ga0134126_1097873613300010396Terrestrial SoilIDKLAAESVTRVRHTPASNDYATATADPLSRLEALTELKTAWHPVGA*
Ga0134126_1101275723300010396Terrestrial SoilELDRLAAETIKRARHRDAAASYETAVADALERIEALTELKTAWHPVGA*
Ga0134124_1123394623300010397Terrestrial SoilAAESVTRVRHTTPADSYEAATGDPLSRLEAVTELKTAWHPVGA*
Ga0134122_1254520423300010400Terrestrial SoilRHAAASNDYATATADPLSRLEALTELKTAWHPVGA*
Ga0153922_111348213300012181Attine Ant Fungus GardensLAAETIKRVRHGAPARTYEDAVDEALTRLEAVTELKTAWHPVGA*
Ga0150985_11061828013300012212Avena Fatua RhizosphereRHSAAATSYDAAIADALNRLEAVTELKTAWHPIGA*
Ga0157302_1031167123300012915SoilDRLAAESVTRVRHAQATQTYDGAVGDALTRLEAVTELKTAWHPIGA*
Ga0164242_1049321923300012942CompostAAETIKRASHRSAATSYEAAVDDALERIAALTELKTAWHPVGA*
Ga0137410_1148164423300012944Vadose Zone SoilLASETIKRVRHGAAVTSYADAVSDSLGRIDAVTELKTAWHPVGA*
Ga0164298_1042458613300012955SoilAETVKRARHAPAATSYEAATDDALARLEAVTELKTAWHPVGA*
Ga0164307_1014540833300012987SoilRTRHATPATTYAAATDNALSRLEAVVELKTAWHPVGA*
Ga0164307_1140215723300012987SoilRHGAPATTYEAATDDALARLEAVTELKTAWHPVGA*
Ga0164306_1054041223300012988SoilDRLAAETIKRVRQESGAVSYAAAVDDALERIEAVVELKTAWHPVGA*
Ga0164306_1076499613300012988SoilAAETVKRTRPPTPATTYASATDNALSRLEAVVELKTAWHPVGA*
Ga0164305_1111951623300012989SoilAAELDRLAAETVKRARHAPAATSYEAATDDALARLEAVTELKTAWHPVGA*
Ga0173483_1032372013300015077SoilDKLAAESVTRVRHTTAATSYETATADPLSRIEGLTELKTAWHPVGA*
Ga0137409_1113520023300015245Vadose Zone SoilRELSAELDRLASETIKRVRHGAAVTSYADAVSDSLGRIDAVTELKTAWHPVGA*
Ga0132258_1004919513300015371Arabidopsis RhizosphereRVRHTDAPNDYAAATADPLSRLEALTELKTAWHPVGA*
Ga0182041_1182816323300016294SoilRLAAETIKRVRHGAAAKSYSDATDDALERLEMVTELKTAWHPVGA
Ga0182035_1206141723300016341SoilSAELDRLAAETIKRVRHGDAATSYEDATDDALERLEAVTELKTAWHPVGA
Ga0187777_1007041333300017974Tropical PeatlandAELGRLAAETIKRVRRGAAATSYEDATDDALDRLEAVTELKTAWHPVGA
Ga0184621_1020058113300018054Groundwater SedimentELDRLAAETVKRTRHGAAAGSYEDATDDALARLEAVTELKTAWHPIGA
Ga0187774_1123691613300018089Tropical PeatlandKRVRHGDAATSYEDATDDALERIEAVTELKTAWHPVGA
Ga0190265_1051176833300018422SoilVRHSRPTTSYEEAVRDPLSRLEAVTELKTAWHPVGA
Ga0190268_1194089533300018466SoilAAESVTRVRHAAPTASYATATADPLSRLEAVTELKTAWHPVGA
Ga0193598_102188413300018910SoilRVRHAAAATDYGEAVRDALGRLEAVVELKTAWHPVGA
Ga0190264_1003008713300019377SoilELAAESVTRVRHADGSPGYEAATADPLSRLEAVTELKTAWHPVGA
Ga0190264_1138414613300019377SoilESVTRVRHAAPTVSYEAAVADALSRLEAVTELKTAWHPVGA
Ga0213875_1055400913300021388Plant RootsAELDRLASETIKRVRHGAPATSYGSATSDALERLHAVTELKTAWHPVGA
Ga0210397_1060961723300021403SoilRARHTAAATTYEAATGDALERIEAVTELKTAWHPVGA
Ga0210397_1109572013300021403SoilVRHGAAATSYEDATDDALDRLEAVTELKTAWHPIGA
Ga0210398_1110444823300021477SoilVRHGAAASTYEDATDDALLRLEAVTELKTAWHPVGA
Ga0126371_1351465113300021560Tropical Forest SoilAAETIKRVRHEDAATSYEDATDDALERLEAVTELKTAWHPVGA
Ga0222622_1005726213300022756Groundwater SedimentPAAEIDLRAAESVTRVRHAAPAGSYAVAVADALARLEAVTELKTAWHPIGA
Ga0207685_1008263313300025905Corn, Switchgrass And Miscanthus RhizosphereLSAELDRLAAETIKRVRHGSAAASYAAAVDDALERIEATVELKTAWHPVGA
Ga0207660_1092026713300025917Corn RhizosphereRHSAAAATYDEAVADALSRIEAVTELKTAWHPIGA
Ga0207706_1136381823300025933Corn RhizosphereVRRAAPTRSYEAAIADALTRLEAVTELKTAWHPIGA
Ga0207678_1173606423300026067Corn RhizosphereAELDRLAAETVKRARHAPAATSYEAATDDALARLEAVTELKTAWHPVGA
Ga0207702_1192349913300026078Corn RhizosphereVKRTRHGAAAVTYEAATDDALARLEAVTELKTAWHPIGA
Ga0209472_110640623300026323SoilTIKRTRHTTAATTYDAAVSDSLSRLEAVTELKTAWHPIGA
Ga0209074_1045820913300027787Agricultural SoilTVKRARHGAGAASYEAATDDALARLEAVTELKTAWHPIGA
Ga0268266_1136116533300028379Switchgrass RhizosphereETIKRARHSAGATTYDEATGNALTRLEAVTELKTAWHPIGA
Ga0307321_101991233300028704SoilVKRTRHGAAAGSYEDATDDALARLEAVTELKTAWHPIGA
Ga0307276_1020196623300028705SoilDRLAAETVKRARHGTAATTYEAATDDALARLEAVTELKTAWHPVGA
Ga0307301_1023856123300028719SoilELDRLAAETVKRARHGAPATTYEAATDDALARLEAVTELKTAWHPVGA
Ga0307315_1023995413300028721SoilVKRARHGAPATTYDAATGDSLARLEAVTELKTAWHPVGA
Ga0307315_1030027413300028721SoilVTRVRHADPTRSYALATADALTRLEAVTELKTAWHPVGA
Ga0307320_1032635413300028771SoilKLASESVTRVRHAAPTGSYAEATADPLSRLEAVTELKTAWHPVGA
Ga0302231_1051608513300028775PalsaSHHEAAVSYDEAVEDALERIAAVIELKTAWHPVGA
Ga0307284_1041769913300028799SoilAELDRLAAETVKRARHGAPATTYEAATDDALARLEAVTELKTAWHPVGA
Ga0307305_1020391323300028807SoilAETVKRARHGAPATTYDAATGDSLARLEAVTELKTAWHPVGA
Ga0307289_1004778813300028875SoilTVKRARHGAPATTYDAATGDSLARLEAVTELKTAWHPVGA
Ga0307289_1034519113300028875SoilKRARHGAPAASYEAATDDALARLEAVTELKTAWHPIGA
Ga0307289_1038903223300028875SoilTAPIDELAAESVTRVRHADPTRSYALATADALTRLEAVTELKTAWHPVGA
Ga0307278_1023357513300028878SoilRLAAETVKRARHGAPATTYEAATDDALARLEAVTELKTAWHPVGA
Ga0307300_1007119813300028880SoilETVKRARHGAAATSYEAATGDSLARLEAVTELKTAWHPIGA
Ga0307300_1033119123300028880SoilRVRHTTPAESYEAATGDPLSRLEALTELKTAWHPVGA
Ga0307277_1013518713300028881SoilKRTRHGAAAASYEAATDDALARLEAVTELKTAWHPIGA
Ga0307304_1017447313300028885SoilTRHGAAAGSYEDATDDALARLEAVTELKTAWHPIGA
Ga0311370_1150150923300030503PalsaAETIKRTRHPRAATSYADAVDDSLERIEAVTELKTAWHPVGA
Ga0302325_1255871713300031234PalsaGRLGAETITRVRRRAAASSYDEAVADSLGRIEALTELKTAWHPIGT
Ga0318538_1071630423300031546SoilRHGAAARSYSDATDDALERLEMVTELKTAWHPVGA
Ga0307469_1222040223300031720Hardwood Forest SoilKLAAESVTRVRHTTPAESYEAATGDPLSRLEAVTELKTAWHPIGA
Ga0318494_1020888523300031751SoilDRLAAETIKRVRHGAAARSYSDATDDALERLEMVTELKTAWHPVGA
Ga0307410_1191157313300031852RhizosphereAAESVTRVRHAPPTTSYAAATADPLSRLESVTELKTAWHPVGA
Ga0310892_1069137113300031858SoilTRVRHTPASNDYATATADPLSRLEALTELKTAWHPVGA
Ga0310900_1061323513300031908SoilELDRLAAETVKRTRHGAAAGTYEAATDDALARLEAVTELKTAWHPIGA
Ga0308175_10000508383300031938SoilLASETIKRTRHSSAAGSYDEAVADALSRLEAVTELKTAWHPIGA
Ga0308175_10289998023300031938SoilELAAELDRLAAETVKRTRHGAGAASYEAATDDALARLEAVTEHKTAWHPIGA
Ga0307409_10259112523300031995RhizosphereDRLAAESVTRVRHTTASTDYATATVDPLSRLEALTELKTAWHPVGA
Ga0318525_1025594123300032089SoilIKRVRHGAAARSYSDATDDALERLEMVTELKTAWHPVGA
Ga0335080_1226667413300032828SoilETIKRARHSVAASTYEDATDDALERLEAVTELKTAWHPVGA
Ga0335076_1087512813300032955SoilIKRVRHEDAATSYEDATDDALERLEAVTELKTAWHPVGA


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