Metagenome / Metatranscriptome Family F092514

Basic Information
Family ID	F092514
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	48 residues
Representative Sequence	MRPEEGTYLAHRQGNPLLGLLPREHAHFGLRREHRGLHGDGVRMRRDIIR
Number of Associated Samples	99
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.26 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.52 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Most Common Taxonomy
Group	Bacteria (88.785 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.953 % of family members)
Environment Ontology (ENVO)	Unclassified (14.953 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.187 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.15% β-sheet: 0.00% Coil/Unstructured: 53.85%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF08238	Sel1	6.54
PF04392	ABC_sub_bind	3.74
PF13091	PLDc_2	2.80
PF08450	SGL	2.80
PF04909	Amidohydro_2	2.80
PF12681	Glyoxalase_2	2.80
PF13531	SBP_bac_11	1.87
PF00296	Bac_luciferase	1.87
PF00903	Glyoxalase	1.87
PF00614	PLDc	1.87
PF04187	Cofac_haem_bdg	0.93
PF12821	ThrE_2	0.93
PF02954	HTH_8	0.93
PF05163	DinB	0.93
PF02661	Fic	0.93
PF13420	Acetyltransf_4	0.93
PF01883	FeS_assembly_P	0.93
PF09720	Unstab_antitox	0.93
PF06452	CBM9_1	0.93
PF07883	Cupin_2	0.93
PF13618	Gluconate_2-dh3	0.93
PF08447	PAS_3	0.93
PF07366	SnoaL	0.93
PF01583	APS_kinase	0.93
PF07394	DUF1501	0.93
PF13360	PQQ_2	0.93
PF08818	DUF1801	0.93
PF00486	Trans_reg_C	0.93
PF02163	Peptidase_M50	0.93
PF01738	DLH	0.93
PF13646	HEAT_2	0.93
PF01546	Peptidase_M20	0.93
PF17170	DUF5128	0.93
PF01042	Ribonuc_L-PSP	0.93
PF00583	Acetyltransf_1	0.93
PF06736	TMEM175	0.93
PF07635	PSCyt1	0.93
PF01436	NHL	0.93
PF04471	Mrr_cat	0.93
PF03401	TctC	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.74
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	2.80
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	2.80
COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	Lipid transport and metabolism [I]	1.87
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.87
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.93
COG0529	Adenylylsulfate kinase or related kinase	Inorganic ion transport and metabolism [P]	0.93
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG3016	Putative heme-binding protein PhuW	General function prediction only [R]	0.93
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.93
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.93
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.79 %
Unclassified	root	N/A	11.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.79 %
Unclassified	root	N/A	11.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.79 %
Unclassified	root	N/A	11.21 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	26.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.21 %
Unclassified	root	N/A	11.21 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	9.35 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	3.74 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	14.95 %
Unclassified	root	N/A	11.21 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8.41 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.67 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	3.74 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.87 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.95 %
Unclassified	root	N/A	11.21 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.48 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3.74 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.80 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.87 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.95 %
Unclassified	root	N/A	11.21 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	7.48 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	3.74 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.80 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.93 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.93 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.95 %
Unclassified	root	N/A	11.21 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	7.48 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.74 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.93 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.95 %
Unclassified	root	N/A	11.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.74 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	2.80 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Microcoleaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae	0.93 %
Microbacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	0.93 %
pseudomallei group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.95 %
Unclassified	root	N/A	11.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.74 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	2.80 %
unclassified Microbacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium	0.93 %
Burkholderia thailandensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia thailandensis	0.93 %
Microcoleus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus	0.93 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.95 %
Unclassified	root	N/A	11.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.74 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	2.80 %
unclassified Microcoleus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → unclassified Microcoleus	0.93 %
Microbacterium sp. cf046	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. cf046	0.93 %
Burkholderia thailandensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia thailandensis	0.93 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.95 %
Unclassified	root	N/A	11.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.74 %
Bradyrhizobium tropiciagri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	2.80 %
Microcoleus sp. FACHB-SPT15	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → unclassified Microcoleus → Microcoleus sp. FACHB-SPT15	0.93 %
Microbacterium sp. cf046	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. cf046	0.93 %
Burkholderia thailandensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia thailandensis	0.93 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_111958956	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300002073\|JGI24745J21846_1005594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1373	Open in IMG/M
3300004081\|Ga0063454_101511102	Not Available	575	Open in IMG/M
3300004092\|Ga0062389_102594744	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300004119\|Ga0058887_1010438	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300004120\|Ga0058901_1002302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	841	Open in IMG/M
3300004157\|Ga0062590_100559961	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	993	Open in IMG/M
3300004480\|Ga0062592_100543814	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	972	Open in IMG/M
3300005163\|Ga0066823_10026812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	932	Open in IMG/M
3300005174\|Ga0066680_10577410	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300005187\|Ga0066675_10233365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → unclassified Microcoleus → Microcoleus sp. FACHB-SPT15	1307	Open in IMG/M
3300005343\|Ga0070687_100016896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	3342	Open in IMG/M
3300005444\|Ga0070694_100142299	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1743	Open in IMG/M
3300005445\|Ga0070708_101303083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300005536\|Ga0070697_101664705	Not Available	571	Open in IMG/M
3300005547\|Ga0070693_100154496	All Organisms → cellular organisms → Bacteria	1456	Open in IMG/M
3300005577\|Ga0068857_100074414	All Organisms → cellular organisms → Bacteria	3026	Open in IMG/M
3300005577\|Ga0068857_102485647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	509	Open in IMG/M
3300005618\|Ga0068864_102363452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300005921\|Ga0070766_11027009	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300006046\|Ga0066652_101702045	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300006052\|Ga0075029_100244788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1131	Open in IMG/M
3300006174\|Ga0075014_100853591	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	542	Open in IMG/M
3300006176\|Ga0070765_100664628	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300006177\|Ga0075362_10501677	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300006358\|Ga0068871_100170736	Not Available	1864	Open in IMG/M
3300006847\|Ga0075431_101662937	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300006852\|Ga0075433_10795204	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300006854\|Ga0075425_102188759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	616	Open in IMG/M
3300006904\|Ga0075424_102660698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300006904\|Ga0075424_102807102	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300009481\|Ga0114932_10793640	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300009700\|Ga0116217_10971737	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300014325\|Ga0163163_11140220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia thailandensis	842	Open in IMG/M
3300016341\|Ga0182035_10538647	Not Available	1002	Open in IMG/M
3300016404\|Ga0182037_10569042	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	958	Open in IMG/M
3300016445\|Ga0182038_10185624	All Organisms → cellular organisms → Bacteria → Acidobacteria	1623	Open in IMG/M
3300018054\|Ga0184621_10191083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300018061\|Ga0184619_10369259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300018079\|Ga0184627_10548700	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300018081\|Ga0184625_10617649	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300018082\|Ga0184639_10460444	Not Available	650	Open in IMG/M
3300018468\|Ga0066662_10168474	All Organisms → cellular organisms → Bacteria → Acidobacteria	1684	Open in IMG/M
3300018468\|Ga0066662_10347659	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300019362\|Ga0173479_10707957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	544	Open in IMG/M
3300019786\|Ga0182025_1362784	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
3300020458\|Ga0211697_10161146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	928	Open in IMG/M
3300021170\|Ga0210400_10185413	All Organisms → cellular organisms → Bacteria → Acidobacteria	1688	Open in IMG/M
3300021178\|Ga0210408_11443520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	517	Open in IMG/M
3300021181\|Ga0210388_11449727	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300021420\|Ga0210394_11426553	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300021432\|Ga0210384_10723911	All Organisms → cellular organisms → Bacteria → Acidobacteria	890	Open in IMG/M
3300021433\|Ga0210391_11127495	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300022504\|Ga0242642_1023236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	857	Open in IMG/M
3300022531\|Ga0242660_1052415	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	894	Open in IMG/M
3300022722\|Ga0242657_1054107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300022726\|Ga0242654_10208868	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300025157\|Ga0209399_10039308	All Organisms → cellular organisms → Bacteria	1963	Open in IMG/M
3300025320\|Ga0209171_10246732	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300025911\|Ga0207654_10379457	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300025911\|Ga0207654_10617860	Not Available	774	Open in IMG/M
3300025915\|Ga0207693_10921165	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300025916\|Ga0207663_10521682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	925	Open in IMG/M
3300025938\|Ga0207704_10493413	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300025942\|Ga0207689_10256565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1446	Open in IMG/M
3300026023\|Ga0207677_11821802	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300026298\|Ga0209236_1042414	All Organisms → cellular organisms → Bacteria	2332	Open in IMG/M
3300026317\|Ga0209154_1328255	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300027176\|Ga0208992_1019045	Not Available	885	Open in IMG/M
3300027684\|Ga0209626_1155158	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
(restricted) 3300027837\|Ga0255041_10284947	Not Available	595	Open in IMG/M
3300027842\|Ga0209580_10106908	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300027854\|Ga0209517_10634380	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300027903\|Ga0209488_10048416	All Organisms → cellular organisms → Bacteria → Proteobacteria	3125	Open in IMG/M
3300028381\|Ga0268264_10034478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. cf046	4163	Open in IMG/M
3300028828\|Ga0307312_10757568	All Organisms → cellular organisms → Bacteria → Proteobacteria	643	Open in IMG/M
3300029943\|Ga0311340_10165150	All Organisms → cellular organisms → Bacteria	2291	Open in IMG/M
3300030738\|Ga0265462_11335355	Not Available	653	Open in IMG/M
3300031226\|Ga0307497_10297560	All Organisms → cellular organisms → Bacteria → Acidobacteria	739	Open in IMG/M
3300031236\|Ga0302324_100167907	All Organisms → cellular organisms → Bacteria	3562	Open in IMG/M
3300031474\|Ga0170818_105513532	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300031545\|Ga0318541_10317587	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300031588\|Ga0302137_1291249	Not Available	536	Open in IMG/M
3300031708\|Ga0310686_106925536	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300031718\|Ga0307474_11482292	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300031720\|Ga0307469_10437757	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1128	Open in IMG/M
3300031740\|Ga0307468_100879360	Not Available	774	Open in IMG/M
3300031781\|Ga0318547_10526509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	731	Open in IMG/M
3300031781\|Ga0318547_10913669	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300031820\|Ga0307473_11485863	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300031854\|Ga0310904_10318355	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	992	Open in IMG/M
3300031858\|Ga0310892_11330064	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300031890\|Ga0306925_10891707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915	Open in IMG/M
3300031890\|Ga0306925_11349123	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300031912\|Ga0306921_10234325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2150	Open in IMG/M
3300031954\|Ga0306926_10716529	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300032009\|Ga0318563_10453585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri	693	Open in IMG/M
3300032075\|Ga0310890_10450865	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	967	Open in IMG/M
3300032075\|Ga0310890_11578089	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300032179\|Ga0310889_10385245	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	693	Open in IMG/M
3300032180\|Ga0307471_101348819	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300032421\|Ga0310812_10187816	All Organisms → cellular organisms → Bacteria → Acidobacteria	892	Open in IMG/M
3300033289\|Ga0310914_11316001	All Organisms → cellular organisms → Bacteria → Proteobacteria	625	Open in IMG/M
3300033812\|Ga0364926_118554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300034149\|Ga0364929_0030792	Not Available	1587	Open in IMG/M
3300034149\|Ga0364929_0211124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	645	Open in IMG/M
3300034178\|Ga0364934_0327805	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.18%
Host-Associated	Host-Associated	16.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.09%
Plants	Host-Associated → Plants	16.82%
Aquatic	Environmental → Aquatic	13.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.49%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.48%
Sediment	Environmental → Aquatic → Sediment	6.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.54%
Marine	Environmental → Aquatic → Marine	3.74%
Floodplain	Environmental → Terrestrial → Floodplain	3.74%
Roots	Host-Associated → Plants → Roots	2.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.87%
Peat	Environmental → Terrestrial → Peat	1.87%
Freshwater	Environmental → Aquatic → Freshwater	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.47%
Loam	Environmental → Terrestrial → Soil → Loam	13.08%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.54%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.74%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.87%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.93%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.93%
Strait	Environmental → Aquatic → Marine → Strait	0.93%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.67%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.87%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.93%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.93%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.93%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.93%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.93%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002073	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004119	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF210 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020458	Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556123-ERR599000)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025157	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3 (SPAdes)	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300027176	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027837 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_3	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031588	Marine microbial communities from Western Arctic Ocean, Canada - CBN3_SCM	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033812	Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092514

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1119589561	3300000956	Soil	MRPMRAEEGTDLAHREWNPFFRFLPREHAHFGVRR
JGI24745J21846_10055941	3300002073	Corn, Switchgrass And Miscanthus Rhizosphere	MRSEEGTYLAHRQGNPLLGLFPGEHAHFGLRREHRGLHGDGVWMRGDIIGQDQY
Ga0063454_1015111021	3300004081	Soil	MRSKEGTYLAHRQGNPLLWLFPWEHAHFGLRREHRGLHGDGVWMR
Ga0062389_1025947441	3300004092	Bog Forest Soil	MRLQEGTYLTHRQGNPFLGLLPRVNAYFGFRREHRALHGNCVRMGRDVVRQDQDGRLAMA
Ga0058887_10104381	3300004119	Forest Soil	MCPEEGMDLAHRQGNPLLRLLPWEHAYFSLWRQHRGLHGHGERMRRDIIRQDQ
Ga0058901_10023022	3300004120	Forest Soil	MYLAHRQGNPLLGLLPREHTHFGLGREHRGLHGDGVRMRRDIIRQD
Ga0062590_1005599611	3300004157	Soil	MRPEEGTYLAHRQGDPFFGFFPWEHAHFGLRREHRGLHGD
Ga0062592_1005438142	3300004480	Soil	MRPEEGTYLAHRQGDPFFGFFPWEHAHFGLRREHRGLHGDGV
Ga0066823_100268121	3300005163	Soil	MRAKERMYLAHRQGNPLLGLLPREHAHFGLRREHRGLHGDGV
Ga0066680_105774102	3300005174	Soil	MYLAHRQGNPLLGLLPREHAHFGVWREHRGLHGHGVRMRR
Ga0066675_102333653	3300005187	Soil	MRPEEGTYLAHRQGNPLLRLLPREHAHFRLGREHRGLHGDGVRMRRGIIRQD
Ga0070687_1000168963	3300005343	Switchgrass Rhizosphere	MRSEEGTYLAHRQGNPLLGLFPGEHAHFGLRREHRGLHGDGVW
Ga0070694_1001422991	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRPEEGTYLAHRQGNPLLGLLPREHAHFRFWREHRGFHRNGVRMRRDIIRQDQYGRL
Ga0070708_1013030831	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRPKEGTYLAYRQRNPLLGLLPREHAHFGLRREHRGLHGDGVRMRGDIIRQDQ
Ga0070697_1016647051	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRPKEGTYLAHCQWNPLLGLLPREHAHFGIRREHRGLHGDGVRMRRDIIRQ
Ga0070693_1001544963	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRLEEGMDLAHRQGNPLFGLFPGEDAHFGFRRKHRTLHGYGVWMSRDIIRQDQYRRLA
Ga0068857_1000744141	3300005577	Corn Rhizosphere	MRPEEGTYMAHRQGNPLLGLLPWVHAHFGLRREHRGLHG
Ga0068857_1024856471	3300005577	Corn Rhizosphere	MRSEEGTYLAHRQGNPLLGLLPREHAHFGLRREHRGLH
Ga0068864_1023634521	3300005618	Switchgrass Rhizosphere	MCAEEGTYLAHRQWNPLLGLLPGENAHFGLWREHRGLHGDGVRMR
Ga0070766_110270092	3300005921	Soil	MCPQERMYLAHRKGNSLLGFLPREHAYFGVWREHRRLHGHGVWMRRD
Ga0066652_1017020451	3300006046	Soil	VRPEEGTDLAHRQWNPFLRLLPREHTHFCLRREHRGLHG
Ga0075029_1002447882	3300006052	Watersheds	MYLAHGQRNPLLGFLPREDAHFGLGREHGGLHGDGVRMRRDIIRQDQYG
Ga0075014_1008535911	3300006174	Watersheds	MCPEEGTYLADRQGNPFLGFLPWEHTHFRIRREHGGFHGDG
Ga0070765_1006646282	3300006176	Soil	MYLAHCQWNPLFGFFPRINAYFGFRRKHRALHGDDERMRRDIVRHNQYR
Ga0075362_105016771	3300006177	Populus Endosphere	MGPKEGTNLANRERNPLLGLLPRKHAHFGVRREHRGLHGDFVRMRRDIV
Ga0068871_1001707362	3300006358	Miscanthus Rhizosphere	MNLAHGQGNPLLGLFPGEHAYFGVGREHRALHRNGERMSRDIVRQDQDRVLA
Ga0075431_1016629371	3300006847	Populus Rhizosphere	MGSEEGTYLTHCQGNPLLRLLPREHAHFCLRREHRGLHGDGVRMRRGIIRQ
Ga0075433_107952043	3300006852	Populus Rhizosphere	MGPEERTYLAYRQGNPLLRLLPREHAHFSLRREHRGLHGDGVRMRRGIIRQD
Ga0075425_1021887591	3300006854	Populus Rhizosphere	MRAEERTNLSHGQWNPFFGFFPWEHAHFSIGSEHRGLHSDGVRMRRNVVGQDQYRCLA
Ga0075424_1026606981	3300006904	Populus Rhizosphere	MRPEERTYLTHGERNPFLGLLPREHAHFGLRRQHRGLHGDGVRMRGDIVRQDQDRR
Ga0075424_1028071021	3300006904	Populus Rhizosphere	MRAKERMNLAHREGNALPGFFPWEHAHFGMRCEHCAFH
Ga0114932_107936402	3300009481	Deep Subsurface	MRPEEGTYLAYRQWNPLWRLLPWEHADFGLRCEHRGLHGDGVRM
Ga0116217_109717371	3300009700	Peatlands Soil	MYLAHRQGDPLLGLLPRENAHFGLWREHRGLHRDGVRMRRDIVRQLPAGRFSHTM
Ga0163163_111402201	3300014325	Switchgrass Rhizosphere	VYLPHRQRNPLLGLLPWKYAHFGVRREHRGFHSDSVRM
Ga0182035_105386471	3300016341	Soil	MRPKEGTYLTHCKGNPLLRLLPREDAHFGVRREHRGLHGDSVRMRRDIIGENQYG
Ga0182037_105690421	3300016404	Soil	MYLADRQRNPLLRLLPGKYAHFGLRRQHRSLHGDGVRMRRDIVGED
Ga0182038_101856241	3300016445	Soil	MCPEEGMNLAHGQGNPLLRLLLREHARFGIWHEHRRLHGDFVRMRR
Ga0184621_101910831	3300018054	Groundwater Sediment	MRPEEGTYLAYRQGNPLLGLLPWEDAHFGLWREHRRLHGDGVRVRR
Ga0184619_103692591	3300018061	Groundwater Sediment	MDLAHRQGNPLFGFFPGEHAHFGLWRDHRALHGDGVRMVRNIVWKDEYRCLARAHE
Ga0184627_105487001	3300018079	Groundwater Sediment	MRPKEGTYLAHGQGNPLLGLLPREHAHFGLRREHRGLHGDGVRMRRDIIR
Ga0184625_106176491	3300018081	Groundwater Sediment	MRPEEGTYLADRQGNPLLGLLPREHTHFGLRREHRGLHGDGVRMRRDIVRQDQDGR
Ga0184639_104604441	3300018082	Groundwater Sediment	MRSEEGTYLAHRQGNPLLGLLPREHAHVGLRREHRGRHSDGVRMRRGIIRQDQYGRPAIA
Ga0066662_101684743	3300018468	Grasslands Soil	MYLAHRQGNPLLGLLPREHAHFGVWREHRGLHGHGVRMRRD
Ga0066662_103476593	3300018468	Grasslands Soil	VYLAHRQGNPLLGLLPREHAHFGVWREHRGLHGHGVRMRR
Ga0173479_107079572	3300019362	Soil	MRSEEGTYLAHRQGNPLLGLFPGEHAHFGLRREHRGLHGDGVWMRGDI
Ga0182025_13627844	3300019786	Permafrost	MYLAHRQGNPFLGLLPREHAHFGIWREHRGLHGNGVRMRRDIVRQDQY
Ga0211697_101611461	3300020458	Marine	MRPEEGPYLANRQGNPFPGLLPREHAHLGFRRQHSSLHCDRVRMRRDIVRQDQDRCLTLT
Ga0210400_101854132	3300021170	Soil	MYLADRQGNPLLGLLPREYAHFGLGREHRGLHGDGVRVLRDIIRED
Ga0210408_114435201	3300021178	Soil	MRPEEGTYLAHRQRNPLLRLLPRVNAYLGIRREHRGLHGDGVGMRRDIIRQDQYGRLA
Ga0210388_114497271	3300021181	Soil	MNLAHRQGNPLLGLLPREHAHFGPLRKHRGLHGDGVRMR
Ga0210394_114265532	3300021420	Soil	MNLAHRQGNPLLGLFPREDAHFGVGREHRGLHGDGVRMRRNVIW
Ga0210384_107239111	3300021432	Soil	MCPEEGTYLAYGQGNPLLGLLPREDAHFGLGREHRRLHGDGVRMRRNIIRQD
Ga0210391_111274952	3300021433	Soil	MYLAHRQGNPLLGLFPREHAHFGLWREHRGLHGDGVRMRRDIIRQDQYRRLAI
Ga0242642_10232361	3300022504	Soil	MDLAHRQGNPLLGLLPREHAHFGLGREHRGLHGDGVGMRRDIIRQDQ
Ga0242660_10524152	3300022531	Soil	MDLAHRQGNPLLGLLPREHAHFGLWREHRGLHGHGVGMRRDIVRQDQYGRLAIA
Ga0242657_10541071	3300022722	Soil	MDLAHRQGNPLLGLLPREHAHFGLWREHRGLHGHGVGMCRDIVRHDQYGRLAIAHEI
Ga0242654_102088681	3300022726	Soil	MDLAHRQRNPLLGLLPREHTHFGLGREHRGLHGDGVGMRRDIIRQDQYG
Ga0209399_100393081	3300025157	Thermal Springs	MGSEERTDLAHRQGNPLFGLLPREHAYFGFGREHRGLHGDGIR
Ga0209171_102467322	3300025320	Iron-Sulfur Acid Spring	MGLQKGTYLAHRQGNPLLGLLPRVNAYFGLRREHRALHGDSVRMRRDIVRQNQYGRLAI
Ga0207654_103794572	3300025911	Corn Rhizosphere	LAHRQGNPLLGLLPREHAHFGLRREHRGLHRDSVRMR
Ga0207654_106178601	3300025911	Corn Rhizosphere	MRSKEGTYLAHRQGNPLLWLFPWEHAHFGFRREHRGLHGDGVWMRRDIIWED
Ga0207693_109211651	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MYLAYRQGNSLLGLLPRKDAHFGVGCEHRGLHGDGVRMRRDIIRQDQDGR
Ga0207663_105216822	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRSEEGTYLAHRQGNPLLGLFPGEHAHFGLRREHRGLHGDGVWMRGDIIGQDQYGH
Ga0207704_104934133	3300025938	Miscanthus Rhizosphere	MRPEEGTYLAHRQGNPLLGLLPREHAHFGLRREHRGLHGDGVRMRRDIIR
Ga0207689_102565652	3300025942	Miscanthus Rhizosphere	MRSEEGTYLAHRQGNPLLGLFPGEHAHFGLRREHRGLHGDGVWMRGDIIGQD
Ga0207677_118218022	3300026023	Miscanthus Rhizosphere	MCAEEGTYLAHRQRNPLLGLLPGENAHFGLWREHRGL
Ga0209236_10424144	3300026298	Grasslands Soil	MCPEEGTYLAHRQGNPLLGLLPREHAHFGLWREHRGLHGDGVR
Ga0209154_13282551	3300026317	Soil	MDLAHRQGDPLLGLLPREHAHFGVWREHRGLHGDGVRMRRDIIRQ
Ga0208992_10190452	3300027176	Forest Soil	MDLAYRQRDPLLGLFPGEHADLGLRRQHRGFHGDGVGMRRDIV
Ga0209626_11551581	3300027684	Forest Soil	MDLAHGQRDTVLGLLPWEHADFGLGGEHRGLHGYGVGMC
(restricted) Ga0255041_102849471	3300027837	Seawater	MCSEEGTYLAYRQGNTLRGLLPREQAHFSLGRQHRSFHG
Ga0209580_101069081	3300027842	Surface Soil	MYLAHRQRNSFLGLLPREDAHFGLRREHRGLHGHGVWM
Ga0209517_106343802	3300027854	Peatlands Soil	MDLADRERNPLFGLFPGEDAHFGFRREQRALHGDGVRMRRDIIRQDQYGSLAI
Ga0209488_100484161	3300027903	Vadose Zone Soil	MCPEEGTYLAHRQGNPLLGLLPRENAHFGLWREHRGLHGDGVRMRR
Ga0268264_100344781	3300028381	Switchgrass Rhizosphere	MRSEEGTYLAHRQGNPLLGLFPGEHAHFGLRREHRGLHGDGVWMRGDIIGQDQ
Ga0307312_107575682	3300028828	Soil	MRLEEGTYLAHSQGNALLGFLPREHAHLSFRREHRGLHGDGVRMRRDIVRQDQYRRL
Ga0311340_101651501	3300029943	Palsa	MDLAHRQGNPLLGLFPREHAHFGLWREHRRLHGDGVRMRRNIIRQDQYGRLAIAD
Ga0265462_113353552	3300030738	Soil	MHLAHRQGNSLLRFLPRENAHFRFWCEHRGLHRDGVWVRRDIIGQDQD
Ga0307497_102975601	3300031226	Soil	MYLAHRQGNPFLGLLPREYAHFGLRREHRGLHGDGVRMRRDIIRQDQQGRLA
Ga0302324_1001679071	3300031236	Palsa	MENPLPLSRPMRLQEGTYLTHRQGNPFLGLLPRINAYFGFRGEHRALHGNRVRMRRNIVRQNQYGRLTM
Ga0170818_1055135323	3300031474	Forest Soil	MRPEEGADLADRQRNPLLGLLPRKQAHFGLRRQHRGLHGDGVGMRRDVIRQDED
Ga0318541_103175871	3300031545	Soil	MRPEEGMNLAHSEGNPLLGLLPRKHAYFRVRREHRGLHGD
Ga0302137_12912491	3300031588	Marine	MRAEEGSNLSYRQWNPLWRFLPREHADFALWREHRGLHGDS
Ga0310686_1069255361	3300031708	Soil	MCPQEGTYLAYCQGNPFLRLFPRKDAHFGLWREHRGFHGDSVRMCRD
Ga0307474_114822921	3300031718	Hardwood Forest Soil	VVGAEEGMDLAHGQRDAVLGLLPGEHADFGLGGEHRGLHGYDVGMRGDVIGQD
Ga0307469_104377572	3300031720	Hardwood Forest Soil	MDLAHRQRNPLLGLLPREHAHFGLWREHRGLHGHGVGMRRDIIRQDQYGC
Ga0307468_1008793601	3300031740	Hardwood Forest Soil	MHLADRQGNALLGLLPGEHADFGVWREHGGFHGHLVRM
Ga0318547_105265091	3300031781	Soil	MRPQEGTYLADRQGNPFFGLLPREHAHFGLRREHRGFHGDGVRMSRDIIRQDQNGR
Ga0318547_109136691	3300031781	Soil	MRPEEGAYLAHRQGNSFLRLLPRKHAHFGIGREHRGFHGDGVWMRRNIIRQDEYG
Ga0307473_114858631	3300031820	Hardwood Forest Soil	MNLAHRQGNPFLGLLPREYAHFGVWREHRSLHGDGVRMRRDIIRQDQH
Ga0310904_103183551	3300031854	Soil	MRPEEGTYLAHRQGDPFFGFFPWEHAHFGLRREHRGLHGDGVRMRRNIVWK
Ga0310892_113300641	3300031858	Soil	MYLAHRQRNPLLGLLPREYAHFGLRREHRGLHGDSIR
Ga0306925_108917071	3300031890	Soil	MRPQEGTYLADRQGNPFFGLLPREHAHFGLRREHRGFHGDGVRMSRDIIRQDQNG
Ga0306925_113491232	3300031890	Soil	MRPEEGAYLAHRQGNSFLRLLPRKHAHFGIGREHRGFHGDGVWMRRNIIR
Ga0306921_102343253	3300031912	Soil	MRPKEGTYLTHCKGNPLLRLLPREDAHFGVRREHRGLHGH
Ga0306926_107165292	3300031954	Soil	MRPQEGTYLADRQGNPFFGLLPREHAHFGLRREHRGFHGDGVRMSRDIIRQDQ
Ga0318563_104535851	3300032009	Soil	MRPKEGTYLTHCKGNPLLRLLPREDAHFGVRREHRGLHGHGVRMRRDIIR
Ga0310890_104508651	3300032075	Soil	MRPEEGTYLAHRQGDPFFGFFPWEHAHFGLRREHRGLHCDGVRMRRNIVWKDQYRRLA
Ga0310890_115780891	3300032075	Soil	MRPEEGTYLAHGQGNPFFGFFPREHAHFGFWREHRGLHGDGVRMRRNIVWKDQ
Ga0310889_103852451	3300032179	Soil	MRPEEGTYLPNCQGNPFGWLLPRKHAHFGLRREHRGLHGDSVRMR
Ga0307471_1013488191	3300032180	Hardwood Forest Soil	MRPEERAYLAHRQGNPLLGLLPREHAHFGIWREHG
Ga0310812_101878162	3300032421	Soil	MRLQEGMDLAHRQGNPLFGLFPGEDAHFGFRRKHRTLHGYGVWMSRDIIRQDQYR
Ga0310914_113160012	3300033289	Soil	MRPEEGAYLAHRQGNSFLRLLPRKHAHFGIGREHRGFHGDGVWMRRNIIRQDEYGRLT
Ga0364926_118554_3_140	3300033812	Sediment	MRPKERTYLAHGQGNPLLGLLPWVDAHFGLRREHRALHGDDVRMRR
Ga0364929_0030792_2_148	3300034149	Sediment	MRSQEGTYLAHCQGNPLLWLFPWEHAHFGLRREHRGLHGDGVWMRRDII
Ga0364929_0211124_2_133	3300034149	Sediment	MRSEEGTYLAHRQGNPLLWLFPWEHAHFGLRREHRGLHGDGVWM
Ga0364934_0327805_2_166	3300034178	Sediment	MCSKEGTYLAHRQGNPLFGLLPREHAYFPLWREHRGLHGDGVRMRRDIIRQDQYG

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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