Metagenome / Metatranscriptome Family F092502

Overview

Basic Information

• Family ID: F092502
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 107
• Average Sequence Length: 51 residues
• Representative Sequence: TEEEQVKLEKDLANVRDRQEGRPPSARKPANTAKKPPSDAENGQTAGAKPNP
• Number of Associated Samples: 100
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.93 %
• % of genes near scaffold ends (potentially truncated): 87.85 %
• % of genes from short scaffolds (< 2000 bps): 85.98 %
• Associated GOLD sequencing projects: 96
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (70.093 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.280 % of family members)
• Environment Ontology (ENVO): Unclassified (31.776 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (44.860 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 22.50%
  β-sheet: 0.00%
  Coil/Unstructured: 77.50%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00155	Aminotran_1_2	78.50
PF03447	NAD_binding_3	6.54
PF07167	PhaC_N	4.67
PF01368	DHH	1.87
PF03320	FBPase_glpX	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	4.67
COG1494	Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase or related protein	Carbohydrate transport and metabolism [G]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	29.91 %
Unclassified	root	N/A	70.09 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	29.91 %
Unclassified	root	N/A	70.09 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	27.10 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.80 %
Unclassified	root	N/A	70.09 %

Level 4

Name	Rank	Taxonomy	Distribution
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	2.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.23 %
Unclassified	root	N/A	70.09 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.36 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	2.80 %
Unclassified	root	N/A	70.09 %

Level 6

Name	Rank	Taxonomy	Distribution
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.93 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	2.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22.43 %
Unclassified	root	N/A	70.09 %

Level 7

Name	Rank	Taxonomy	Distribution
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	2.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.61 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.93 %
Unclassified	root	N/A	70.09 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	2.80 %

Level 8

Name	Rank	Taxonomy	Distribution
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Deuterostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia	2.80 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.93 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	2.80 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.93 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.93 %
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	0.93 %
Unclassified	root	N/A	70.09 %

Level 9

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Chordata	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata	2.80 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Unclassified	root	N/A	70.09 %
unclassified Nitrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter	0.93 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	2.80 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.93 %
unclassified Thiocapsa	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa	0.93 %

Level 10

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Craniata	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %

Level 11

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %
Vertebrata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata	2.80 %

Level 12

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Gnathostomata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %

Level 13

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Chondrichthyes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %

Level 14

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Elasmobranchii	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %

Level 15

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Selachii	infraclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii	2.80 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %

Level 16

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Galeomorphii	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %

Level 17

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Galeoidea	superorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %

Level 18

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Orectolobiformes	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes	2.80 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %

Level 19

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Hemiscylliidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %

Level 20

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Chiloscyllium	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %

Level 21

Name	Rank	Taxonomy	Distribution
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Chiloscyllium punctatum	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	2.80 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.93 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1.87 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.93 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Thiocapsa sp. KS1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → unclassified Thiocapsa → Thiocapsa sp. KS1	0.93 %
Unclassified	root	N/A	70.09 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300031197|Ga0255310_10002788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	4547
3300000655|AF_2010_repII_A100DRAFT_1010781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1747
3300000793|AF_2010_repII_A001DRAFT_10078924	Not Available	705
3300000953|JGI11615J12901_10230607	Not Available	685
3300002073|JGI24745J21846_1000601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3233
3300003994|Ga0055435_10006068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2090
3300004156|Ga0062589_101383017	Not Available	685
3300004633|Ga0066395_10427508	Not Available	751
3300005163|Ga0066823_10088233	Not Available	620
3300005165|Ga0066869_10029181	Not Available	881

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.03%
Host-Associated	Host-Associated	28.97%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	2.80%
Plants	Host-Associated → Plants	28.97%
Terrestrial	Environmental → Terrestrial	68.22%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	1.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.08%
Roots	Host-Associated → Plants → Roots	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%
Soil	Environmental → Terrestrial → Soil	68.22%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.15%
Loam	Environmental → Terrestrial → Soil → Loam	12.15%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.48%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.67%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.87%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.87%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.80%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental
3300002073	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4	Host-Associated
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental
3300005276	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10107811	3300000655	Forest Soil	ELANVRDRQEGRTQTPKKPAPKPKKPPNDGESGQTAGAKPNP*
AF_2010_repII_A001DRAFT_100789241	3300000793	Forest Soil	PTAPMTEEEQARLEKDLANTRDRQEGRPPPAKKSANTGKKSPNGAQGGQTAGAKPDP*
JGI11615J12901_102306071	3300000953	Soil	RLEKELANVRDRQEGRPPAGKTGASTAKKPPRDVQNSQTDGAKANP*
JGI24745J21846_10006014	3300002073	Corn, Switchgrass And Miscanthus Rhizosphere	KELINVRDRQEGRPAATKKAAPTAKKPPKGTQNGQPDGAKANP*
Ga0055435_100060682	3300003994	Natural And Restored Wetlands	MTEEEQVRLEKELASVRDRQEGRPPAAKGAPGPKKPPKDMQNSQTDGAKANP*
Ga0062589_1013830171	3300004156	Soil	SVPMTEEEQLKLEKDLANVRDRQEGRPPSARKPANTAKKPPGDAENGQTAGAKPNP*
Ga0066395_104275082	3300004633	Tropical Forest Soil	RSSAPMTEEEQVKLEKELANIRDHQEGRPAPAKKPANTTKKSPNDAEKGQTAGVKPNP*
Ga0066823_100882332	3300005163	Soil	LEKDLARARDQQEGRPPQVKPPAKKPAPAAKKPSKDDENGQTAGAKPNP*
Ga0066869_100291812	3300005165	Soil	ARATIPMTEDEQAKLEKELANVRDRQEGRTQSPKKPAPKTKKPPNEAEGGQTAGAKPNP*
Ga0065717_10020042	3300005276	Arabidopsis Rhizosphere	MTEEEQVRLEKELINVRDRQEGRPAATKKAAPTAKKPPKGAQNGQTDGAKANP*
Ga0065712_101147072	3300005290	Miscanthus Rhizosphere	MTEAEQAKLEKELVKVRDRQEGRQLATKKAGTTAKKPPKDTQNGQTDGAKANP*
Ga0070676_101349492	3300005328	Miscanthus Rhizosphere	DRTSVPMTEEEQVKLEKDLANVRDRQEGRPPSARKPANTAKKPPSDAENGQTAGAKPNP*
Ga0066388_1004409872	3300005332	Tropical Forest Soil	MTEEEQIRLEKELANVRDRQEGRSQATKKAAAAAKKPPNTVESGQTSGVKPNP*
Ga0066388_1021453271	3300005332	Tropical Forest Soil	PMTEEEQVKLEKDLANMRDRQEGRPPTPKKPASTAKKSPKDVESGQTAGAKPNP*
Ga0070660_1019490451	3300005339	Corn Rhizosphere	LANIRDRQEGRTQPSKKPASKPKKPPNDAQNGQTAGAKPNP**
Ga0070689_1000112826	3300005340	Switchgrass Rhizosphere	MTEEEQVRLEKELINVRDRQEGRPAATKKAAPTAKKPPKGAQNGQTDGAKPNP*
Ga0070703_103936442	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	RLEKELINVRDRQEGRPAATKKAAPTAKKPPKGTQNGQPDGAKANP*
Ga0070709_113802611	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	EQVKLEKDLANVRDRQEGRSPSARKPANTVKKPPSDAENGQTAGAKPNP*
Ga0070711_1019602011	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RATVPMTEEEQVKLEKDLAKARDRQEGHPAGKKAATTPKKPPKDAQGGQSDGAKTNP*
Ga0070662_1005207671	3300005457	Corn Rhizosphere	RTSVPMTEEEQLKLEKDMANVRDRQEGRPPSARKPANTAKKPPGDAENGQTAGAKPNP*
Ga0070707_1004135622	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	DRTSVPMTEEEQVKLEKDLANVRDRQEGRSPSARKPANTVKKPPSDAENGQTAGAKPNP*
Ga0068853_1020645132	3300005539	Corn Rhizosphere	TEEEQVKLEKDLANVRDRQEGRSPSARKPANTVKKPPSDAENGQTAGAKPNP*
Ga0068853_1023891421	3300005539	Corn Rhizosphere	ARATVPMTEDEQVKLEKELANVRDRQEGRTQPSKKPAPKPKKPPNDAQNGQTAGAKPNP*
Ga0070665_1018673311	3300005548	Switchgrass Rhizosphere	TEEEQVKLEKDLANVRDRQEGRPPSARKPANTAKKPPSDAENGQTAGAKPNP*
Ga0070702_1005367041	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	DMPPDRTSVPMTEEEQVKLEKDLANVRDRQEGRPPSARKPANTAKKPPSDAENGQTAGAKPNP*
Ga0068852_1013759031	3300005616	Corn Rhizosphere	VPMTEEEQVKLEKDLANVRDRQEGRSPSARKPANTVKKPPSDAENGQTAGAKPNP*
Ga0068860_1006049002	3300005843	Switchgrass Rhizosphere	DMPPDRTSVPMTEEEQVKLEKDLANVRDRQEGRSPSARKPANTVKKPPSDAENGQTAGAKPNP*
Ga0075026_1001633143	3300006057	Watersheds	SVPMTDEEQLRLEKDLASERDRQEGRPPSGKKASSTAKKPLKDTENGQTAGAKPNP*
Ga0070712_1001817393	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RATVPMTEDEQVKLEKELANIRDRQEGRTQPSKKPAPKPKKPPNDAQNGQTAGAKPNP*
Ga0075366_109424011	3300006195	Populus Endosphere	PMTEEEQVRLEKELINVRDRQEGRPAATKKAAPTAKKPPKGTQNGQPDGAKANP*
Ga0075426_109590542	3300006903	Populus Rhizosphere	PPARSSIPMTEEEQVKAEKELTALRDRQEGRSPASKKAAAAAKKPPTAGQNGQTTGAKPNP*
Ga0075435_1018311742	3300007076	Populus Rhizosphere	KELVKVRDRQEGRQLATKKAGTTAKKPPKDTQNGQTDGAKANP*
Ga0105243_106960551	3300009148	Miscanthus Rhizosphere	LEKDLANVRDRQEGRPPSARKPANTAKKPPGDAENGQTAGAKPNP*
Ga0105238_110231201	3300009551	Corn Rhizosphere	MTEEEQVKLEKDLANVRDRQEGRPPSARKPANTAKKPPGDAENGQTAGAKPNP*
Ga0126380_113547192	3300010043	Tropical Forest Soil	RATVPMTEDEQVKLEKELANIRDRQEGRTQPSKKPVAKPKKPPNDAQDGQTAGAKPNP*
Ga0126370_110115432	3300010358	Tropical Forest Soil	TVRDRQEGRPPAGKKGVSSAKKPPKDVQNSQTDGAKANP*
Ga0126376_101997131	3300010359	Tropical Forest Soil	RVRDRQEGRPPASKKASPTAKNPPKEAPKSQTDGAKANP*
Ga0126372_105942361	3300010360	Tropical Forest Soil	TEEEQVKLEKELANVRDRQEGRTQTPKKPAPKPKKPPNDAESGQTAGAKPNP*
Ga0126379_118144311	3300010366	Tropical Forest Soil	MPPDRPSAPMTEEEQVKLEKELANIRDHQEGRPAPAKKPANTTKKSPNDAEKGQTAGVKPNP*
Ga0134128_109706012	3300010373	Terrestrial Soil	RQEGRSPSARKPANTVKKPPSDAENGQTAGAKPNP*
Ga0134128_120317312	3300010373	Terrestrial Soil	MTEDEQVKLEKELANIRDRQEGRTQPSKKPAPKPKKPPNDAQNGQTAGAKPNP*
Ga0126381_1004737783	3300010376	Tropical Forest Soil	EEQVKLEKELANVRDRQEGRTQTPKKPVPKPKKPPNGGESGQPAGAKPNP*
Ga0134126_107603482	3300010396	Terrestrial Soil	KDLANVRDRQEGRPPSARKPANTAKKPPSDAENGQTAGAKPNP*
Ga0134126_111414681	3300010396	Terrestrial Soil	ATIPMTEDEQAKLDKELANVRDRQEGRTQSPKKPAPKTKKPPNEAEGGQTAGAKPNP*
Ga0126383_101424691	3300010398	Tropical Forest Soil	EEQVKLEKDLANIRDRQEGRSAPAKKPASAAKKLPKDTENGQSAGIKPNP*
Ga0134121_105125931	3300010401	Terrestrial Soil	EQLKLEKDLANVRDRQEGRPPSARKPANTAKKPPGDAENGQTAGAKPNP*
Ga0137371_109026701	3300012356	Vadose Zone Soil	TEEEKVKLEKELAAVRDRQEGRPPPGKKATPASKKPPNDNENGQTAGAKANP*
Ga0157353_10036661	3300012496	Unplanted Soil	MPPARATVPMTEDEQVKLEKELANVRDRQEGLTQPSKKPAPKPKKPPNDAQNGQTAGAKPNP*
Ga0157288_100000391	3300012901	Soil	VRDRQEGRPAATKKAAPTAKKPPKGAQNGQTDGAKPNP*
Ga0164300_106111462	3300012951	Soil	PPDRAAVPMSEEEQFKLEKELANVRDRQEGRPAPGKKVAPVTKKPPNDAENGQTAGSKANP*
Ga0164299_106968782	3300012958	Soil	SVPMTEEEQVKLEKDLANVRDRQEGRPPSARKPANTAKKPPSDAENGQTAGAKPNP*
Ga0126369_101928862	3300012971	Tropical Forest Soil	MPPDRSSAPMTEEEQVKLEKELANIRDHQEGRPAPAKKPANTTKKSPNDAEKGQTAGVKPNP*
Ga0075303_10572431	3300014299	Natural And Restored Wetlands	MTEEEQVRLEKELASVRDRQEGRPPAAKGAPGPKKPPKDMQNSQTDGAK
Ga0163161_105351142	3300017792	Switchgrass Rhizosphere	ANVRDRQEGRSPSARKPANTVKKPPSDAENGQTAGAKPNP
Ga0163161_115398211	3300017792	Switchgrass Rhizosphere	KELANIRDRQEGRTQPSKKPASKPKKPPNDAQNGQTAGAKPNP
Ga0187775_102044701	3300017939	Tropical Peatland	KELASARDRQEGRPRPDKKAVPTAKKPPNDAEYGQTAGAKANP
Ga0187785_101500942	3300017947	Tropical Peatland	DMPPDRSSPPMTEEEQVKLEKDLANTRDRQEGRPPPAKKPASTVKKPPKEAESGQTAGAKPNP
Ga0187773_111242991	3300018064	Tropical Peatland	MTEEEQVKLEKDLANVRDRQEGRPAPSKKSAPAAKKPPNDAVNDTANGQTAGAKANP
Ga0173479_100010001	3300019362	Soil	PMTEEEQVRLEKELINVRDRQEGRPAATKKAAPTAKKPPKGTQNGQPDGAKANP
Ga0247746_10052352	3300022886	Soil	MTEEEQVRLEKELINVRDRQEGRPAATKKAAPTAKKPPKGAQNGQTDGAKPNP
Ga0247745_10169841	3300022898	Soil	VRDRQEGRPAATKKAAPTAKKPPKGAQNGQTDGAKPNP
Ga0247795_10031223	3300022899	Soil	MTEEEQVRLEKELINVRDRQEGRPAATKKAAPTAKKPPKGAQNGQTDGAKANP
Ga0247751_10001246	3300023069	Soil	RQEGRPAATKKAAPTAKKPPKGAQNGQTDGAKANP
Ga0207695_107905401	3300025913	Corn Rhizosphere	LEKELINVRDRQEGRPAATKKAAPTAKKPPKGTQNGQPDGAKANP
Ga0207663_109869871	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	PMTEEEQVKLEKDLANVRDRQEGRPPSARKPANTAKKPPSDAENGQTAGAKPNP
Ga0207649_114862911	3300025920	Corn Rhizosphere	QVKLEKELANIRDRQEGRTQPSKKPAPKPKKPPNDAQNGQTAGAKPNP
Ga0207650_100424553	3300025925	Switchgrass Rhizosphere	MTEAEQAKLEKELVKVRDRQEGRQLATKKAGTTAKKPPKDTQNGQTDGAKANP
Ga0207701_106085922	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	EKELVKVRDRQEGRQLATKKAGTTAKKPPKDTQNGQTDGAKANP
Ga0207686_104959221	3300025934	Miscanthus Rhizosphere	RDRQEGRPPSARKPANTAKKPPGDAENGQTAGAKPNP
Ga0207679_101965381	3300025945	Corn Rhizosphere	EQVKLEKDLANVRDRQEGRPPSARKPANTAKKPPSDAENGQTAGAKPNP
Ga0207679_102697081	3300025945	Corn Rhizosphere	QVKLEKELINVRDRQEGRPPQGKKGAPTAKKPPKDAQNSQTDGTKPNP
Ga0207667_122280332	3300025949	Corn Rhizosphere	MPPDRTSVPMTEEEQVKLEKDLANVRDRQEGRPPSARKPANTAKKPPSDAENGQTAGAKPNP
Ga0210071_10170952	3300025955	Natural And Restored Wetlands	MTEEEQVRLEKELASVRDRQEGRPPAAKGAPGPKKPPKDMQNSQTDGAKANP
Ga0207676_106596812	3300026095	Switchgrass Rhizosphere	DRQEGRQLATKKAGTTAKKPPKDTQNGQTDGAKANP
Ga0207683_105435301	3300026121	Miscanthus Rhizosphere	KDLANVRDRQEGRPPSARKPANTAKKPPGDAENGQTAGAKPNP
Ga0207698_103605922	3300026142	Corn Rhizosphere	MTEDEQVKLEKELANIRDRQEGRTQPSKKPAPKPKKPPNDARNGQTAGAKPNP
Ga0207499_1031062	3300026792	Soil	LEKELINVRDRQEGRPASTKKAAPTAKKPPKGAQNGQTDGAKANP
Ga0207511_1012801	3300026802	Soil	EEEQVRLEKELINVRDRQEGRPAATKKAAPTAKKPPKGAQNGQTDGAKANP
Ga0207591_1069772	3300026827	Soil	SPMTEEEQVRLEKELINVRDRQEGRPAATKKAAPTAKKPPKGTQNGQPDGAKANP
Ga0207538_10000394	3300027122	Soil	TEEEQVRLEKELINVRDRQEGRPAATKKAAPTAKKPPKGTQNGQPDGAKANP
Ga0208525_10060642	3300027288	Soil	ASVPMTDEEQLRLERDLATQRDRQEGRPPPGKKPPLTAKKPPKDADDGQNTGAKANP
Ga0209995_10368812	3300027471	Arabidopsis Thaliana Rhizosphere	RDRQEGRPAATKKAAPTAKKPPKGTQNGQPDGAKANP
Ga0210002_10057411	3300027617	Arabidopsis Thaliana Rhizosphere	DRQEGRPAATKKAAPTAKKPPKGAQNGQTDGAKPNP
Ga0209799_10768641	3300027654	Tropical Forest Soil	PARKTVPMTEEEQVKLEKELANVRDRQEGRTQTPKKPAPKPKKPPNDGESGQTAGAKPNP
Ga0209465_104473061	3300027874	Tropical Forest Soil	MPPERASVTMTEEEQVKLEKELANVRDRQEGRAPQDKKVVPATKKRPEDSGNAQPAGDKANP
Ga0268265_110508961	3300028380	Switchgrass Rhizosphere	TEEEQVRLEKELINVRDRQEGRPASTKKAAPTAKKPPKGAQNGQTDGAKANP
Ga0307307_100588261	3300028718	Soil	QEGRAQPSKKKPAPTTKKPPNNTENGQTAGAKANP
Ga0307317_101043931	3300028720	Soil	VPMTEEDQVKLEKELTNVRDRQEGRTQSSKKPAPATKKPPNNAESGQTAGAKANP
Ga0307317_101232031	3300028720	Soil	RQEGRAQPSKKKPAPTTKKPPNNTENGQTAGAKANP
Ga0307316_102480042	3300028755	Soil	EQVRLEKELANARDRQEGRAQPSKKKPAPTTKKPPNNTENGQTAGAKANP
Ga0307504_101157772	3300028792	Soil	TEEEQVKLEKDLANVRDRQEGRPSPGKKTAPAAKKPPKDAENGQAAGAKANP
Ga0307305_100266921	3300028807	Soil	RLEKELANARDRQEGRAQPSKKKPAPTTKKPPNNTENGQTAGAKANP
Ga0075377_115109171	3300030844	Soil	EEEQVKLEKDLANVRDRQEGRPPSARKPANTAKKPPSDAENGQTAGAKPNP
(restricted) Ga0255310_100027883	3300031197	Sandy Soil	MTEEEQVRLEKELINVRDRQEGRPAATKKAAPTAKKPPKGAQNGQADGAKANP
Ga0307496_100633431	3300031200	Soil	KDLANVRDRQEGRPPSARKPANTAKKPPSDAENGQTAGAKPNP
Ga0307468_1016463992	3300031740	Hardwood Forest Soil	VRDRQEGSPPAGKKGAPTAKKPPKDVQNSQTDGAKANP
Ga0318509_100768051	3300031768	Soil	ARATVPMTEEEQVKLEKELANVRDRQEGRTQSPKKPAPKPKKPPNDGESGQTAGAKPNP
Ga0318546_102308551	3300031771	Soil	PMTEEDQLKLEKELANVRDRQEGRTQSPKKPAPKPKKPPNDGESGQTAGAKPNP
Ga0318550_102291351	3300031797	Soil	ELANVRDRQEGRTQSPKKSAPKPKKPPNDGESGQTAGAKPNP
Ga0310907_100025651	3300031847	Soil	MTEDEQVKLEKELANVRDRQEGRTQPSKKPAPKPKKPPNDAQNGQTAGAKPNP
Ga0306919_102171592	3300031879	Soil	MPPDRSSAPMTEEEQVKLEKELANIRDHQEGRPAPAKKPAKTTKKSPNDAETGQTAGVKPNP
Ga0318544_104231012	3300031880	Soil	EEQVKLEKELANVRDRQEGRTQSPKKSAPKPKKPPNDGESGQTAGAKPNP
Ga0310884_101573072	3300031944	Soil	VRLEKELINVRDRQEGRPAATKKAAPTAKKPPKGAQNGQTDGAKANP
Ga0318553_101429711	3300032068	Soil	ATVPMTEEEQVKLEKELANVRDRQEGRTQSPKKPAPKPKKPPNDGESGQTAGAKPNP
Ga0306924_107970302	3300032076	Soil	KLEKELANIRDHQEGRPAPAKKPAKTTKKSPNDAETGQTAGVKPNP
Ga0307471_1015562171	3300032180	Hardwood Forest Soil	LITVRERQEGRPPAGKKGAPTAKKPPKDVQNSQTDGAKANP
Ga0316628_1019661421	3300033513	Soil	RALATMSEDEQVRLEKELANVRDRQEGKTPSGKKAPPTAKKLPKDAENGRSAGAKPNP