Metagenome Family F092485

Overview

Basic Information

• Family ID: F092485
• Family Type: Metagenome
• Number of Sequences: 107
• Average Sequence Length: 64 residues
• Representative Sequence: MSRTVLAAAAAVLIGLGACGGGKEQSTRPAATRSKAAAKPGTSTQKKKTTAKADTTRQKNPLTNN
• Number of Associated Samples: 87
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 71.03 %
• % of genes near scaffold ends (potentially truncated): 29.91 %
• % of genes from short scaffolds (< 2000 bps): 67.29 %
• Associated GOLD sequencing projects: 79
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (93.458 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (34.579 % of family members)
• Environment Ontology (ENVO): Unclassified (56.075 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (59.813 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: Yes
• Secondary Structure distribution:
  α-helix: 40.00%
  β-sheet: 0.00%
  Coil/Unstructured: 60.00%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF02274	ADI	29.91
PF13424	TPR_12	18.69
PF13181	TPR_8	13.08
PF01425	Amidase	11.21
PF02954	HTH_8	9.35
PF00106	adh_short	1.87
PF13432	TPR_16	1.87
PF01740	STAS	1.87
PF13428	TPR_14	0.93
PF08530	PepX_C	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1834	N-Dimethylarginine dimethylaminohydrolase	Amino acid transport and metabolism [E]	29.91
COG2235	Arginine deiminase	Amino acid transport and metabolism [E]	29.91
COG4874	Uncharacterized conserved protein	Function unknown [S]	29.91
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	11.21
COG2936	Predicted acyl esterase	General function prediction only [R]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.39 %
Unclassified	root	N/A	5.61 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.39 %
Unclassified	root	N/A	5.61 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.46 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.93 %
Unclassified	root	N/A	5.61 %

Level 4

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	31.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.48 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.67 %
Unclassified	root	N/A	5.61 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.93 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	28.97 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.93 %
Unclassified	root	N/A	5.61 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.93 %
Unclassified	root	N/A	5.61 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	28.97 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Unclassified	root	N/A	5.61 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.93 %
Trinickia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia	0.93 %
Unclassified	root	N/A	5.61 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.93 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.93 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 12

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.93 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 13

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 14

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.93 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 15

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.93 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 16

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
asterids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 17

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
lamiids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids	0.93 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 18

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Lamiales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales	0.93 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 19

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Orobanchaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Orobanchaceae	0.93 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 20

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Buchnereae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Orobanchaceae → Buchnereae	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 21

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Striga	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Orobanchaceae → Buchnereae → Striga	0.93 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Level 22

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.74 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	28.97 %
Striga asiatica	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Lamiales → Orobanchaceae → Buchnereae → Striga → Striga asiatica	0.93 %
Trinickia symbiotica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia → Trinickia symbiotica	0.93 %
Unclassified	root	N/A	5.61 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002558|JGI25385J37094_10007673	All Organisms → cellular organisms → Bacteria → Proteobacteria	3828
3300002560|JGI25383J37093_10012989	All Organisms → cellular organisms → Bacteria	2751
3300002560|JGI25383J37093_10115007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	766
3300002561|JGI25384J37096_10011281	All Organisms → cellular organisms → Bacteria	3409
3300002562|JGI25382J37095_10015297	All Organisms → cellular organisms → Bacteria	2930
3300002562|JGI25382J37095_10022300	All Organisms → cellular organisms → Bacteria	2463
3300002562|JGI25382J37095_10117539	All Organisms → cellular organisms → Bacteria	912
3300002908|JGI25382J43887_10098490	All Organisms → cellular organisms → Bacteria	1549
3300002908|JGI25382J43887_10370628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605
3300002908|JGI25382J43887_10409759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	573

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Type

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	3.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	96.26%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	42.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.53%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	21.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	13.08%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	21.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	34.58%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100076731	3300002558	Grasslands Soil	VLIGLAACGGGKSRPAATRSKATAKPTTSTQQKKKTTGKPDTARVKNPLTNN*
JGI25383J37093_100129892	3300002560	Grasslands Soil	MSRTVLTAATAVLIGLAACGGGKSRPAATRSKATAKPTTSTQQKKKTTGKPDTARVKNPLTNN*
JGI25383J37093_101150072	3300002560	Grasslands Soil	GAGPRLSEGGMSRTVLAAAAAVLIGLGACGGGKERSTRPAATRSKAAAKPGTSTQKKKTTAKADTTRQKNPLTNN*
JGI25384J37096_100112813	3300002561	Grasslands Soil	MSRTVLAAAAAVLIGLGACGGGKERSTRPAATRSKAAAKPGTSTQKKKTTAKADTTRQKNPLTNN*
JGI25382J37095_100152973	3300002562	Grasslands Soil	MSRTVLXAATAXLIGLAACGGGKXRXAATRSKATAKPTTSTQQKKKTTXKPDTARVKNPLTNN*
JGI25382J37095_100223002	3300002562	Grasslands Soil	MSRTVLAAAAAVLIGLAACGRGKPHSTRPAATRSNPTAKPATSTQKKKTPAKPDTTRGKNPLTNN*
JGI25382J37095_101175391	3300002562	Grasslands Soil	MSRTVMTAAAAVAVLIGLAACGGGKHRSNKAAASESKATAQPNTSTQKKKTTAKRDTARAKNPLTN
JGI25382J43887_100984901	3300002908	Grasslands Soil	MSRTVMTAAAAVAVLIGLAACGGGKHRSNKAAASESKATAQPNTSTQKKKTTAKRDTARAKNPLTNN*
JGI25382J43887_103706281	3300002908	Grasslands Soil	MSRTVLAAATALLIGLAACGGGKARSAATRSKATAKPTTSTQQKKKTTAKPDTARVKNPLTNN*
JGI25382J43887_104097591	3300002908	Grasslands Soil	MSRTVLAAXAAVFIGLVACGGGKGHSTKPAATRSKSTAKPATSAQKKKTTAKPDTTRGKNPLTNN*
Ga0066674_100043834	3300005166	Soil	MSRTVLTAAAAVLIGLAACGGGKPHSTRPAATRSSTTAKPATSTQKKKTPAKSDTTRGKNPLTNN*
Ga0066674_101758732	3300005166	Soil	MSRTVLAVAAAVLIGLGACGGGKEHSTRPAATRSKAAAKPGTSTQKKKTTAKADSTRQKNPLTNN*
Ga0066672_100007318	3300005167	Soil	MSRTVLAAAAAVFIGLVACGGGKGHSTKPAATRSKSTAKAAPSAQKKKTSKADTTRGKNPLTNN*
Ga0066680_104096792	3300005174	Soil	MSRTVLAAAAAVLIGLAACGGGKPHSTRPAATRSSTTAKPATSTQKKKTPAKPDTTRGKNPLTNN*
Ga0066688_108911801	3300005178	Soil	MSRTVLAAAAAVLIGLGACGGGKEHSTRPAASRSKAAAKPGTSTQKKKTTAKHDTTRQKNPLTNN*
Ga0066685_100737012	3300005180	Soil	MSRTVLTAAAAVLIGLAACGGGKPHSTRPAATRSSTTAKPATSTQKKKTPAKPDTTRGKNPLTNN*
Ga0066676_101616261	3300005186	Soil	SYIGAEPRLSEGGMSRTVLAAAAAVLIGLGACGGGKEHSTRPAASRSKAAAKPGTSTQKKKTTAKHDTTRQKNPLTNN*
Ga0066676_103365851	3300005186	Soil	MSRTVLAVAAAVLIGLGACGGGKEQSTRPAATRSKAAAKPGPSTQKKKTTAKADSTRQKNPLTNN*
Ga0066686_100577543	3300005446	Soil	MSRTVLAAAAAVLIGLAACGGGKHSAKPAATRSKNSATPATSTQKKKTTAKPDTTRHKNPLTNN*
Ga0066686_101830522	3300005446	Soil	MSRTVLAVAAAVLIGLGACGGGKEQSTRPAATRSKAAAKPGPSTQKKKTTAKADTTRQKNPLTNN*
Ga0070706_1000744263	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSRTVLAAATALLIGLAACGSGKSRPAATRSKATAKPTTSTQQKKKTTAKPDTARAKNPLTNN*
Ga0070697_1000305596	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	TVLAAATAVLIGLAACGSGKSRPAATRSKATAKPTTSTQQKKKTTAKPDTARAKNPLTNN
Ga0066692_103443542	3300005555	Soil	RSYIGAEPRLSEGVMSRTVVAAAAAVLIGLAACGRGKPHSTRPAATRSNPTAKPATSTQKKKTPAKSDTTRGKNPLTNN*
Ga0066699_100482323	3300005561	Soil	AVLIGLGACGGGKEHSTRPAATRSKAAAKPGTATQKKKTTAKADSTRQKNPLTNN*
Ga0066706_110915332	3300005598	Soil	AAVLIGLGACGGGKEHSTRPAASRSKAAAKPGTSTQKKKTTAKHDTTRQKNPLTNN*
Ga0070712_1006008852	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSRTVLAAAIAMLIGLAACRGGRESRPAATRSKATAKPTTSTQQKKKTTAKPDTARAKNPLTNN*
Ga0066653_103707842	3300006791	Soil	EGGMSRTVLAVAAAVLIGLGACGGGKEHSTRPAATRSKAAAKPGTSTQKKKTTAKADSTRQKNPLTNN*
Ga0066665_109027412	3300006796	Soil	AAVLIGLGACGGGKEHSTRPAATRSKAAAKPGTSTQKKKTTAKADTTRQKNPLTND*
Ga0066659_112736001	3300006797	Soil	AAAVLIGLAACGGGKHSAKPAATRSKSTATPATSTQKKKTNAKPDTTRHKNPLTNN*
Ga0079220_104425622	3300006806	Agricultural Soil	MSRTVLAAATAVLIGLAACGGGKSGPAATRSKATAKPTTSTQQKKKTTAKPDTARAKNPLTNN*
Ga0099793_102133422	3300007258	Vadose Zone Soil	SYIGAEPRLWEGAMSRTVLAAATALLIGLAACGGGKSRPAATRSKATAKPTTTTQQKKKTTAKSDTARVKNPLTNN*
Ga0099829_102371172	3300009038	Vadose Zone Soil	MSRTVLAAATAVLIGLAACGGGKSRPAATRSKATAKPTTSTQQKKKTTGKPDTARVKNPLTNN*
Ga0099830_100465273	3300009088	Vadose Zone Soil	MSRTVLAAATAVLIGLAACGGGKSRPAATRSKATAKPTTSTQQKKKTTAKPDTARVKNPLTNN*
Ga0099827_100269004	3300009090	Vadose Zone Soil	MSRTVLAAAVLIGLAACGGGKRQSTKSAATGSKATAKPATSEQKKKTTAKPDTAPAKNPLTNN*
Ga0099792_100439972	3300009143	Vadose Zone Soil	MSRTVLAAATALLIGLAACGGGKSRPAATRSKATAKPTTTTQQKKKTTAKSDTARVKNPLTNN*
Ga0134088_100581972	3300010304	Grasslands Soil	MSRTVLAVAAAVLIGLGACGGGKEQSTRPAATRSKAAAKPGTSTQKKKTTAKADTTRQKNPLTNN*
Ga0134088_101373501	3300010304	Grasslands Soil	VAVLIGLAACGGGKQRSNKAAASESKATAQPNTSTQKKKTTAKHDTARAKNPLTNN*
Ga0134086_100349391	3300010323	Grasslands Soil	AAAAVLIGLAACGGGKHSAKPAATRSKTSATPATSTQKKKTTGKPDTTRRKNPLTNN*
Ga0134064_100084501	3300010325	Grasslands Soil	SRTVLAVAAAVLIGLGACGGGKEHSTRPAATRSKAAAKPGTSTQKKKTTAKADSTRQKNPLTNN*
Ga0134065_100550492	3300010326	Grasslands Soil	MSRTVLAATAAVLIGLAACGGGKHSAKPAATRSKTSATPATSTQKKKTSTKPDTTRHKNPLTNN*
Ga0134111_100173721	3300010329	Grasslands Soil	AVLIGLAACGGGKHSAKPAATRSKTSATPATSTQKKKTSTKPDTTRHKNPLTNN*
Ga0134063_105698232	3300010335	Grasslands Soil	VLAAAATVLIGLAACGGGKHSAKPAATRSKTSATPATSTQKKKTTGKPDTTRRKNPLTNN
Ga0134071_107598312	3300010336	Grasslands Soil	MSRTVLAAAAAVLIGLGACGGGKEQSTRPAATRSKAAAKPGTSTQKKKTTAKADTTRQKNPLTNN*
Ga0134066_102737821	3300010364	Grasslands Soil	RLSEGGMSRTVLAVAAAVLIGLGACGGGKEHSTRPAATRSKAAAKPGTSTQKKKTTAKADSTRQKNPLTNN*
Ga0134126_100611561	3300010396	Terrestrial Soil	IGLAACGGGKQQSTKPAATGSKATAKPATSEQKKKTTAKPDTAPAKNPLTNN*
Ga0134126_122033112	3300010396	Terrestrial Soil	MSRTVLAAAAAVFIGLAACGGGKQQSTKPAATGSKATAKPATSEQKKKTTAKPD
Ga0137391_106237282	3300011270	Vadose Zone Soil	MFRTVLAAAAAVLIGLAACGGGKSRPAATRSKATAKPTTTTQQKKKTTAKSDTARVKNPLTNN*
Ga0137393_103300352	3300011271	Vadose Zone Soil	MSRTVLTAATAVLIGLAACGGGKSRPAATRSKATAKPTTSTQQKKKTTAKPDTARVKNPLTNN*
Ga0137393_106708671	3300011271	Vadose Zone Soil	MSRTVLAAATAVLIGLAACGGGKSRPAGTRSKATAKPTTSTQQKKKTTAKPDTARVKNPLTNN*
Ga0137389_101998551	3300012096	Vadose Zone Soil	MSRTVLAAAAAVLIGLAACGGGKSRPAATRSKATAKPTTSTQQKKKTTGKPDTARVKNPLTNN*
Ga0137388_100441913	3300012189	Vadose Zone Soil	MSRTVLAAATAVLIGLAACGGGKSRPAGTRSKATAKPTTSTQQKKKTTGKPDTARVKNPLTNN*
Ga0137388_111254141	3300012189	Vadose Zone Soil	MSRTVLAAAAAVLIGLAACGGGKRQSTKPPATGSKSTAKPATSTQKKKTTAKPDTAPAKNPLTNN*
Ga0137364_100100705	3300012198	Vadose Zone Soil	MSRTVLAAAAAVLIGLGACGGGKERSTRPAATQSKAAAKPGTSTQKKKTTAKADTTRQKNPLTNN*
Ga0137364_100359463	3300012198	Vadose Zone Soil	MSRTVMTAAAAVAVLIGFAACGGGKHRSNKAAASESKATAQPNTSTQKKKTTAKHDTARAKNPLTNN*
Ga0137364_112733261	3300012198	Vadose Zone Soil	MSRTVLAAAAAVFIGLVACGGGKGHSTKPAATRSKSTAKAAPSAQKKKTSKPDTTRGKNPLTNN*
Ga0137383_1000297410	3300012199	Vadose Zone Soil	MSRTVLTAAAAVAVLIGLAACGGGKQRSNKTAASASKPRAQPNTSTQKKKTTGKADTTRQKNPLTNN*
Ga0137383_103321722	3300012199	Vadose Zone Soil	MSRTVLAAAAAVVIGLVACGGGKHSAKPAATRSKSTATPATSTQKKKTTAKPDTARQKNPLTNN*
Ga0137399_101913252	3300012203	Vadose Zone Soil	MSRTVLAAATALLIGLAACGGGKSRPAATRSKATAKPTTTTQQKKKTTAKPDTARVKNPLTNN*
Ga0137362_101494932	3300012205	Vadose Zone Soil	MSRTVLAAAAAVLIGLAACGGGKRQSTKPPATGSKATAKPATSTQKKKTTAKPDTAPAKNPLTNN*
Ga0137380_105835761	3300012206	Vadose Zone Soil	MSRNVLAAAAAVLIGLGACGGGKQRSSRPAATQSKAAAKPGTSTQKKKTTAKADTTRQKNPLTNN*
Ga0137379_117320551	3300012209	Vadose Zone Soil	MSRTVLTAAAAVAVLIGLAACGGGKQRSNKAAASESKTTAQPNNSTQKKKTTAKSDTARAKNPLTNN*
Ga0137377_110262282	3300012211	Vadose Zone Soil	AAAAAVVIGLVACGGGKHSAKPAATRSKSTATPATSTQKKKTTAKPDTARQKNPLTNN*
Ga0137377_111457372	3300012211	Vadose Zone Soil	AAAVLIGLAACGGGKHSAKPAATRSKSTATPATSTQKKKTNAKPDTTRQKNPLTND*
Ga0137370_100017733	3300012285	Vadose Zone Soil	MSRTVLAAAVAVFIGLAACGGGKGQATKPAATRSRGTAKPATSTQKKKTTTKHDTTRGKNPLTNN*
Ga0137386_105092222	3300012351	Vadose Zone Soil	MSRTVLAAAAAVLIGLGACGGGKERSSRPAATQSKAAAKPGTSTQKKKTTAKADTTRQKNPLTNN*
Ga0137371_100239663	3300012356	Vadose Zone Soil	MSRTVMTAAAAVAVLIGLAACGGGKQRSNKAAASESKTTAQPNTSTQKKKTTAKSDTARAKNPLTNN*
Ga0137360_105362252	3300012361	Vadose Zone Soil	MSRTVLAAATALLIGLAACGGGKSRPAATRSKATAKPTTTTQQKKRTTAKSDTARVKNPLTNN*
Ga0137361_102151563	3300012362	Vadose Zone Soil	TAATAVLIGLAACGGGKSRPAATRSKATAKPTTSTQQKKKTTGKPDTARVKNPLTNN*
Ga0137394_100414933	3300012922	Vadose Zone Soil	MSRTILAAAAAVLIGLAACGGGKQQSTKPAATGSKGTAKPTTSADKKKTTAKPDTARAKNPLTNN*
Ga0137413_108053372	3300012924	Vadose Zone Soil	MSRTVLAVGVAVAVLIGLAACSGGKQQSTKPAAGSKAAAQPTSEQKKKTTAKPDTAKAKNPLTNN*
Ga0137407_100487582	3300012930	Vadose Zone Soil	MSRTVLAAAAAVLIGLTACGGGKQQSTKPAATGSKATAKPTTSTQKKKATAKPDTAPAKNPLTNN*
Ga0137407_109963981	3300012930	Vadose Zone Soil	MSRTVLAAAAAVFIGLVACGGGKGHSTKPAATRSKSTAKPAPSAQKKKTSKPDTTRGKNPLTNN*
Ga0134110_100415281	3300012975	Grasslands Soil	MSRTVLAAAAAVFIGLAACGGGKGQSTNPAATRSKATAKPSTSTEKKKTTAKRDTTRHKNPLTNN*
Ga0134089_100695192	3300015358	Grasslands Soil	MSRTVLAAAAAVLIGLGACGGGKEQSTRPAATRSKAAAKPGPSTQKKKTTAKADTTRQKNPLTNN*
Ga0134085_100500252	3300015359	Grasslands Soil	MSRTVLAATAAVLIGLAACGGGKHSAKPAATRSKTSATPATSTQKKKTTGKPDTTRRKNPLTNN*
Ga0134112_102080502	3300017656	Grasslands Soil	MLQTVGETRGSAPPQAPLSYIGAGPRLSEGGMSRTVLAAAAAVLIGLGACGGGKERSTRPAATRSKAAAKPGTSTQKKKTTAKADTTRQKNPLTNN
Ga0134074_11927252	3300017657	Grasslands Soil	VLIGLAACGGGKQRSNKTAASASKATAQPNTSTQKKKTTGKADTTRQKNPLTNN
Ga0066655_103668892	3300018431	Grasslands Soil	MSRTVLAVAAAVLIGLGACGGGKEHSTRPAATRSKAAAKPGTSTQKKKTTAKADSTRQKNPLTNN
Ga0066655_106278181	3300018431	Grasslands Soil	MSRTVLAAAAAVLIGLGACGGGKEHSTRPAASRSKAAAKPGTSTQKKKTTAKHDTTRQKNPLTNN
Ga0066667_105655352	3300018433	Grasslands Soil	MSRTVLAAAAAVLIGLAACGGGKGQSTNPAATRSKATAKPSTSTQKKKTTAKADTTRQKNPLTNN
Ga0066662_104433943	3300018468	Grasslands Soil	MSRTVLAAAAAVLIGLAACGGGKPHSTRPAATRSSTTAKPATSTQKKKTPAKPDTTRGKNPLTNN
Ga0066669_100008583	3300018482	Grasslands Soil	MSRTVLTAAAAVLIGLAACGGGKPHSTRPAATRSSTTAKPATSTQKKKTPAKSDTTRGKNPLTNN
Ga0137408_11674892	3300019789	Vadose Zone Soil	MSRTVLAAAAAVLIGLTACGGGKQQSTKPAATGSKATAKPTTSTQKKKATAKPDTAPAKNPLTNN
Ga0179594_101436441	3300020170	Vadose Zone Soil	SRTVLAAATAVLIGLAACGGGRESRPAVTRSKAAAKPTTSTPQKKKTTAKADTARGKNPLTNN
Ga0179596_101138832	3300021086	Vadose Zone Soil	MFRTVLAAAAAVLIGLAACGGGKSRPAATRSKATAKPTTTTQQKKKTTAKSDTARVKNPLTNN
Ga0207684_102063272	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSRTVLAAATALLIGLAACGSGKSRPAATRSKATAKPTTSTQQKKKTTAKPDTARAKNPLTNN
Ga0209350_10619672	3300026277	Grasslands Soil	MSRTVLAAAAAVFIGLVACGGGKGHSTKPAATRSKSTAKAAPSAQKKKTSKADTTRGKNPLTNN
Ga0209235_10014423	3300026296	Grasslands Soil	MSRTVLTAATAVLIGLAACGGGKSRPAATRSKATAKPTTSTQQKKKTTGKPDTARVKNPLTNN
Ga0209235_10100057	3300026296	Grasslands Soil	MSRTVLAAAAAVLIGLGACGGGKERSTRPAATRSKAAAKPGTSTQKKKTTAKADTTRQKNPLTNN
Ga0209238_10164202	3300026301	Grasslands Soil	MSRTVLAAAVAVFIGLAACGGGKGQATKPAATRSRGTAKPATSTQKKKTTTKHDTTRGKNPLTNN
Ga0209761_12816061	3300026313	Grasslands Soil	EPRLSEGVMSRTVLAAAAAVFIGLVACGGGKGHSTKPAATRSKSTAKAAPSAQKKKTSKADTTRGKNPLTNN
Ga0209647_12887961	3300026319	Grasslands Soil	MSRTVLAAAAAVLIGLAACGGGKQRSTKPAATGSKGTAKPTTSADKKKTTAKPDTARAKNPLTNN
Ga0209131_13879832	3300026320	Grasslands Soil	ATALLIGLAACGGGKSRPAATRSKATAKPTTTTQQKKKTTAKSDTARVKNPLTNN
Ga0209801_12551612	3300026326	Soil	AAAAVLIGLAACGGGKHSAKPAATRSKSTATPATSTQKKKTNAKPDTTRHKNPLTNN
Ga0209266_10116345	3300026327	Soil	MSRTVLAATAAVLIGLAACGGGKHSAKPAATRSKTSATPATSTQKKKTTGKPDTTRRKNPLTNN
Ga0209159_10966421	3300026343	Soil	GGMSRTVLAVAAAVLIGLGACGGGKEHSTRPAATRSKAAAKPGTSTQKKKTTAKADSTRQKNPLTNN
Ga0209159_11323381	3300026343	Soil	MSRTVLAVAAAVLIGLGACGGGKEHSTRPAATRSKAAAKPSTSTQKKKTTAKADSTRQKNPLTNN
Ga0209690_10399041	3300026524	Soil	PREAPGSYIGAEPRLSEGVMSRTVLAAAAAVLIGLAACGRGKPHSTRPAATRSNPTAKPATSTQKKKTPAKPDTTRGKNPLTNN
Ga0209058_11636642	3300026536	Soil	MSRTVLAAAAAVFIGLAACGGGKGQSTNPAATRSKATAKPSTSTEKKKTTAKRDTTRHKNPLTNN
Ga0209161_100011171	3300026548	Soil	SRTVLAVAAAVLIGLGACGGGKEHSTRPAATRSKAAAKPGTSTQKKKTTAKADSTRQKNPLTNN
Ga0209648_105313232	3300026551	Grasslands Soil	MSRTVLAAATALLIGLAACGGGKSRPAATRSKATAKPTTTTQQKKKTTAKSDTARVKNPLTNN
Ga0209388_11013952	3300027655	Vadose Zone Soil	MSRTVLTAATAVLIGLAACGGGKSRPAATRSKATAKPTTTTQQKKKTTAKPDTARVKNPLTNN
Ga0209073_102240962	3300027765	Agricultural Soil	MSRTVLAAATAVLIGLAACGGGKSGPAATRSKATAKPTTSTQQKKKTTAKPDTARAKNPLTNN
Ga0209701_100174982	3300027862	Vadose Zone Soil	MSRTVLAAATAVLIGLAACGGGKSRPAATRSKATAKPTTSTQQKKKTTAKPDTARVKNPLTNN
Ga0209283_104216311	3300027875	Vadose Zone Soil	MSRTVLTAATAVLIGLAACGGGKSRPAATRSKATAKPTTSTQQKKKTTAKPDTARVKNPLTNN
Ga0307471_1010956112	3300032180	Hardwood Forest Soil	MSRTVLAAAAAVFIGLAACGGGKQQSTKPAATGSKATAKPATSEQKKKTTAKPDTTPAKNPLTNN
Ga0307472_1000554483	3300032205	Hardwood Forest Soil	MSRTVLAAATAVLIGLAACGSGKSRPAATRSKATAKPTTSTQQKKKTTAKPDTARAKNPLTNN