NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F092408

Metagenome / Metatranscriptome Family F092408

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F092408
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 121 residues
Representative Sequence TVRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATLISRFVHLPPAYEEALRALGEGPMVDLVHELEGGGEVERLAAMDVVEGLGYLWPRLQELTKVLPA
Number of Associated Samples 96
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 2.80 %
% of genes near scaffold ends (potentially truncated) 85.98 %
% of genes from short scaffolds (< 2000 bps) 92.52 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (72.897 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(20.561 % of family members)
Environment Ontology (ENVO) Unclassified
(20.561 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(53.271 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164.166.168.170.172.174.176.178.180.182.184.186.188
1Ga0062389_1032521701
2Ga0070714_1003067991
3Ga0070678_1019170781
4Ga0070684_1007917141
5Ga0070684_1007932431
6Ga0070761_104218302
7Ga0070763_100949212
8Ga0068856_1000511461
9Ga0070717_102933881
10Ga0070765_1009100702
11Ga0075021_110340332
12Ga0074059_120025451
13Ga0074057_121527674
14Ga0105240_117413291
15Ga0116214_10585121
16Ga0116218_13803431
17Ga0116221_15477251
18Ga0074044_110198601
19Ga0126376_128680912
20Ga0126378_110683872
21Ga0134128_112846062
22Ga0126381_1008743263
23Ga0126381_1026609511
24Ga0126383_101701793
25Ga0134127_102951031
26Ga0126344_13598952
27Ga0137381_112071692
28Ga0137385_114251062
29Ga0137359_112690821
30Ga0126369_105721381
31Ga0126369_111246092
32Ga0157370_113265122
33Ga0132258_100676593
34Ga0182036_105013372
35Ga0182032_112523011
36Ga0182039_111358812
37Ga0187820_11159071
38Ga0187809_100749971
39Ga0187819_104417482
40Ga0187780_101601693
41Ga0187777_113038842
42Ga0187816_103735991
43Ga0187766_103367071
44Ga0187766_103743752
45Ga0187784_109790342
46Ga0187772_101933801
47Ga0187769_107308252
48Ga0066669_108861991
49Ga0193701_10709432
50Ga0210407_110777331
51Ga0210403_111960141
52Ga0210395_104837372
53Ga0210388_110950732
54Ga0210393_109153692
55Ga0210385_100426706
56Ga0210397_112525032
57Ga0210389_100780581
58Ga0210383_101561981
59Ga0210383_111111191
60Ga0210390_108787292
61Ga0126371_126370521
62Ga0247691_10649221
63Ga0207699_101362212
64Ga0207695_113926411
65Ga0207700_105803871
66Ga0207664_104620824
67Ga0207664_107338652
68Ga0209239_13391561
69Ga0208488_10342303
70Ga0208324_11054741
71Ga0209166_100952631
72Ga0307282_102207941
73Ga0302221_105003321
74Ga0307296_104587061
75Ga0307310_100890141
76Ga0307312_100703071
77Ga0307277_103724852
78Ga0307308_100690821
79Ga0302181_101366451
80Ga0302179_103370442
81Ga0311357_109289151
82Ga0311355_103280041
83Ga0302317_102627952
84Ga0302325_123383201
85Ga0318534_101849592
86Ga0318538_106352051
87Ga0318515_103474822
88Ga0318515_105244011
89Ga0318496_107205392
90Ga0318554_104399832
91Ga0318564_104299041
92Ga0318512_106048962
93Ga0318569_101374662
94Ga0318553_103428402
95Ga0307471_1013692392
96Ga0335085_104751611
97Ga0335074_100454032
98Ga0335074_102813811
99Ga0335074_114643972
100Ga0335075_100352299
101Ga0335075_106523222
102Ga0335083_109368061
103Ga0335073_109185261
104Ga0335073_118118111
105Ga0334854_055172_583_948
106Ga0370515_0289330_3_383
107Ga0370514_030219_1_444
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.55%    β-sheet: 0.00%    Coil/Unstructured: 51.45%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100110TVRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATLISRFVHLPPAYEEALRALGEGPMVDLVHELEGGGEVERLAAMDVVEGLGYLWPRLQELTKVLPASequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
73.8%26.2%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Bog Forest Soil
Freshwater Sediment
Watersheds
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Untreated Peat Soil
Tropical Peatland
Bog Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Agricultural Soil
Soil
Palsa
Arabidopsis Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Boreal Forest Soil
3.7%6.5%2.8%7.5%3.7%20.6%2.8%8.4%6.5%2.8%2.8%2.8%6.5%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062389_10325217013300004092Bog Forest SoilAAIRLGPISTVRFAGPDRYWDGCHEFGKLSPREARRTQPARIGPRRDELGTFATLISRLGPALAPGYEEALRALGEGPMTDLVHELEDGGEAERLPAMEVNEALAYLWPRLQELTEVMPAS*
Ga0070714_10030679913300005435Agricultural SoilAIRLGPIAVVRFAGPDRYWDGCHEFGKLSAREARKAQPARTGPRRDELGTFATLISRFGPTLTPTFEQALRTLGEGPAADLVHELEDGGEVKRLAAMEVNEALGYLWPQLQELTKIMPAS
Ga0070678_10191707813300005456Miscanthus RhizosphereCHDFGRLSAREARRTQPARIGPRRDELGTFATVISRFAHLPPAYEEALRALGEGPVAGRLVHELEGGGEVERLAAMDVVEGLGHLWPRLQELTKVLPA*
Ga0070684_10079171413300005535Corn RhizosphereCHDFGRLSAREARRTQPARIGPRRDELGTFATVISRFAHLPPAYEEALRALGEGPVAGRLVHELEGGGEVERLAAMDVVEGLGHLWPRLQELTKVLHA*
Ga0070684_10079324313300005535Corn RhizosphereDLVLTTTLEPCLQCAAAIRLGPIATVRFAGQDRYWEGCHEFGRLSPREARRAQPERNGPRRDELGTFATLISRFGPKLAGSFERICRAMGEGPLFDLVHELTDGGGFEALAAMEVDAALAYLWPRLQGESAG*
Ga0070761_1042183023300005591SoilAAIRLGPISIVRFAGPDRYWDGCHEFGKLSPREARRTQPARIGPRRDELGTFATLISRLGPALAPGYEEALKTLGEGPMADLVHELEDGGEAERLPAMEVNEALAYLWPRLQELTEVMPAS*
Ga0070763_1009492123300005610SoilQCAAAIRLGPIATVRFAGADRYWDGCHDFAMLSPREAQRTQPAREGPRSGELGVFGALMSRMGVGLWPRYEEALRELGEGPSVDLARRLAEDGELERLAAMEVNEALGYLWPRLTELCSAR*
Ga0068856_10005114613300005614Corn RhizosphereMRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATVISRFAHLPPAYEEALRALGEGPVAGRLVHELEGGGEVERLAAMDVVEGLGHLWPRLQELTKVLPA*
Ga0070717_1029338813300006028Corn, Switchgrass And Miscanthus RhizosphereCGSAGRGVPAVRGRHPAGPVAAMRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATVISRFAHLPPAYEEALRALGEGPVAGRLVHELEGGGEVERLAAMDVVEGLGHLWPRLQELTKVLPA*
Ga0070765_10091007023300006176SoilLQCAGAIRLGPIGTVRFAGRDRYWDGYHDFGKLSAREAQRTQPARIGPRPDELGTFATLISRFGPTLTYRFEQALRTLGEGPMIDLVHALEDGGEAERLAAMEVDEALGYLWPRLRELSEVMGP*
Ga0075021_1103403323300006354WatershedsTVRFAGADRYWDGCHEFGKLSPREAQRAQPGRIGPRHDELGVFATVISRIGPARKQGYEKALRALGEGAMVDLVRELERGGEVTLLTAMEVDAALGHLWPRLTNCTNSSEPF*
Ga0074059_1200254513300006578SoilLSGSLRRTPSLSGHGPGSAQLPGGCVAGETHAVDTVGAIRLGPVATVRFAGPDRYWDGCHDFGKLSAREANRTQPARIGPRRDELGTFATLISRFVHLPPGYQEALRAMDVIEGLGYLWPRLQELTMVLPA*
Ga0074057_1215276743300006605SoilVDTVGAIRLGPVATVRFAGPDRYWGGCHDFGKLSAREANRTQPARIGPRRDELGTFATLISRFVHLPPGYQEALRAMDVIEGLGYLWPRLQELTMVLPA*
Ga0105240_1174132913300009093Corn RhizosphereDAGLINCRFSASCGSAGRGVPAVRGRHPAGPVAAMRFAGPDRYWDGCHDFARLSAREARRAQPARIGPRPDELATFATLISRLTHLPPAYEEGLRALGDGPMVDLVHAMSGDGEVERLATMDVTGGLAYLWPRLAGLAEAPPA*
Ga0116214_105851213300009520Peatlands SoilLQCAGAIRLGPVATVRFAGPDRSWDGCHDFGKLSAREAHRAQPARIGPRRDELGTFATLISRIAHLPPGYEQALRALGEGPMVDLVHELEDGGEVERLAAMDVADGLGYLWPGSRN*
Ga0116218_138034313300009522Peatlands SoilTVRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATLISRFVHLPPAYEEALRALGEGPMVDLVHELEGGGEVERLAAMDVVEGLGYLWPRLQELTKVLPA*
Ga0116221_154772513300009523Peatlands SoilTTLQPCLQCAGAIRLGPVATVRFAGPDRYWDGCHDFGKLSAREAHRAQPARIGPRRDELGTFATLISRIAHLPPGYEQALRALGEGPMVDLVHELEDGGEVERLAAMDVADGLGYLWPGSRN*
Ga0074044_1101986013300010343Bog Forest SoilAVRFAGPDRYWDGCHEFGKLSPREARRTQPTRIGPRRDELGTFATLISRLGPALAPGYEEALRALGEGPMTDLVHELEDGGEAERLPAMEVNEALAYLWPRLQELTEVMPAS*
Ga0126376_1286809123300010359Tropical Forest SoilGPIATVRFAGADRYWDGCHDFTKLSPREAQRVQPVREGPRRDELGAFATLISRLGPGLRTRYEEAVRAVGEGPAIDLVHHLRATGEADRLPAMEVNEALDYLWPRLCELTA*
Ga0126378_1106838723300010361Tropical Forest SoilNVLARLPFRGRRDLVLTTTLQPCLQCAAAIRLGPVATVRFAGRDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGIFATLISRLVRLPPGYEQALRALGDGPMTDLVHELEGGGVVERLAAMDIVEGLGYLWPRLQELAKVLPA*
Ga0134128_1128460623300010373Terrestrial SoilMRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATVISRFAHLPPAYEEALRALGEGPVAGRLVHELEGGGEVERLAAMDVVEGLEHLWPRLQELTKVLPA*
Ga0126381_10087432633300010376Tropical Forest SoilFAGPDRYWDGCHEFGKLSAREARKAQPARTGPRRDELGTFATLISRFGPTLTPTFEQALRTLGEGPMTDLVHELEDGGEVKRLAAMEVGEALGYLWPQLQELTNIMPAS*
Ga0126381_10266095113300010376Tropical Forest SoilLQCAAAIRLGPVRTVRFAGPDRYWNGCHEFGKLSAREARKAQPARTGPRRDELGTFATLISRFGPTLTPTLEQALRTLGEGPMTDLVHELEDGGGVKRLAAMEVNEALGDLWPQLQELTKAMPAS*
Ga0126383_1017017933300010398Tropical Forest SoilLEPCLQCAGAIRLGPIATVRFAGQDRYWDGCHDFGKLSPREARRTQPTRIGPRGDELGVFATLISRFGPKLTPRFEMVMRGMGEGPLFDLVHQLQDSGEIGKLAAMEVEAALAYLWPRLRGLSAATAEG*
Ga0134127_1029510313300010399Terrestrial SoilPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATVISRFAHLPPAYEEALRALGEGPVAGRLVHELEGGGEVERLAAMDVVEGLGHLWPRLQELTKVLPA*
Ga0126344_135989523300010866Boreal Forest SoilAGRDRYWDGYHDFGKLSAREAQRTQPARIGPRPDELGTFATLISRFGPTLTYRFEQALRTLGEGPMIDLVHALEDGGEAERLAAMEVDEALGYLWPRLRELSEVMGP*
Ga0137381_1120716923300012207Vadose Zone SoilVRGRHPARRGRHRAVRRTGSYWDGCHDFAKLSAREAQRTQPARIGPRHDELGIFATLISRFVHLPPAYEKALRALGEGPAVDLVHELDGDGEVERLAAMDIVEALGYLWPRLQELTKALPG*
Ga0137385_1142510623300012359Vadose Zone SoilDRYWDGCHDFGRLSAREARRTQPARTGPRRDELGTFATLISRFARLPPGYEEALRALGEGPVADLMHELERGGEVECLAAMDVTEGLEYLWPRLQELTKVLPA*
Ga0137359_1126908213300012923Vadose Zone SoilRHQDLVLTTTLEPCLQCAGAIRLGPISTVRFAGPDRYWDGCHDFGKLSAREAQRTQPTRIGPRRDELGTFATLISWFGPALTPRFEKALRTLGEGPMADLVHELEDGGEAERLAAMEVNEALGYLWPRLQELTKVMPAS*
Ga0126369_1057213813300012971Tropical Forest SoilTTRQPCLQCAAAIRLGPVAVVRYAGPDRYWDGCHEFGKLSAREARRAQPARTGPRRDELGTFATLISRFGPTLTPAFEEVLRTLGERPMTDLVHELEDGGEVERLAAMEVSEALGYLWPQLQELTKVMPA*
Ga0126369_1112460923300012971Tropical Forest SoilEPCLQCAGAIRLGPIATVRFAGPDRYWDGCHDFGKLSPREAKRTQPTRIGPRGDELGVFATLISRFGPKLTPRFEMVMRAMGEGPLFDLVHQLQDSGEIGELAAMEVEAALAYLWPRLRGLSAATAEG*
Ga0157370_1132651223300013104Corn RhizosphereLVLTTTLQPCLQCAAAIRLGPVATVRFAGADHYWDGCHDFARLSAREARRAQPARIGPRPDELATFATLISRLTHLPPAYEEGLRALGDGPMVDLVHAMSGDGEVERLATMDVTGGLAYLWPRLAGLAEAPPA*
Ga0132258_1006765933300015371Arabidopsis RhizosphereMRFAGPDPYWDGWHDFGRLSAREARRTQPARIGPRRDELGTFATVISRFAHLPPAYEEALRALGEGPVAGLVHELEGGGEVERLAAMDVIEGLGHLWPRLQELTKVLPA*
Ga0182036_1050133723300016270SoilVRGCHPAGPDRLRAVRGPDRYWDGCHEFGKLSAREARRAQPTRIGPRRDELGTFATLISRIGPALTPSYEKALRTLGEEPMADLAHELEDSGEAEHLAAIEVNEALGYLWPRLQELAAVMPDPCMPEMS
Ga0182032_1125230113300016357SoilGCHEFGKLSAREARKAQPARTGPRRDELGAFATLMSRFGPTLTPTFEEALRTLGEGPMTDLVHQLEDAGGVKRLAAMEVNEALGYLWPQLQELTKVMPAS
Ga0182039_1113588123300016422SoilLPFRHPRDLVLTTTLQPCLQCAAAIRLGPIAVVRFAGPDRYWDGCHDFGKLSAREARKAQPARTGPHRDELGTFATLISRFGPTLTPTFEQALRALGEGPAADLVHELEDGGKVKRLAAMEVNEALGYLWPQLQELTKVMPAS
Ga0187820_111590713300017924Freshwater SedimentYWDGCYDFGKLSAREAQRTQPARIGPRRDELGTFATVIARFSRALTPSFEKALRTLGEGPLIDLVHELEDGGEAENLAAMEVDEALGYLWPRLQELTEVMRQPEMS
Ga0187809_1007499713300017937Freshwater SedimentLQCAGAIRLGPVATVRFAGPDRHWDGCHDFGKLSAREARRAQPARIGPRRDELGTFATLISRIAHLPPGYEQALRALGEGPMVDLVHELEDGGEVERLAAMDVADGLGYLWPRLQELTKILPP
Ga0187819_1044174823300017943Freshwater SedimentLVLTTTLQPCLQCAGAIRLGPVATVRFAGPDRYWDGCHDFGKLSAREARKAQPARIGPRRDELGTFATLISRITHLPPGYEQALRALGEGPMVDLVHELEDGGEVERLAAMDVADGLGYLWPRLQELTKILPP
Ga0187780_1016016933300017973Tropical PeatlandVLARLPSRGRRDLVLTTTLQPCLQCAAAIRLGPVATVRIAGPDRYWDGCHDFGRLSAREAHRTQPARIGPRQDELGTFATLISRFVRLPPGYEEALRTLGEGPMVDLVRELEGDGEVERLAAMDVSEGLGYLWRRLRELRKVLPA
Ga0187777_1130388423300017974Tropical PeatlandPGRHCEAGPDRYWDGCHEFGKLSAREARRARPPRIGPCRDELGTFATLISRIGPALTPGYEKALRTLGEGPMADLAHELGNSGEAEWMAAMEVNEALGYLWPRLRELATVMPDLTR
Ga0187816_1037359913300017995Freshwater SedimentLQPCLQCAGAIRLGPVATVRFAGPDRYWDGCHDFGKLSAREARRAQPARIGPRRDELGTFATLISRIAHLPPGYEQALRALGEGPMVDLVHELEDGGEVERLAAMDVADGLGYLWPRLQELTKILPP
Ga0187766_1033670713300018058Tropical PeatlandSRGRRDLVLTTTLQPCLQCAAAIRLGPVATVRFAGPDRYWDGCHDFGRLSAREAHRTQPARIGPRQDELGTFATLISRFVRLPPGYEEALRTLGEGPMVDLVRELEGDGEVERLAAMDVSEGLGYLWPRLRELRKVLPA
Ga0187766_1037437523300018058Tropical PeatlandMSRGRRLFVRPGRHCEAGPDRYWDGCHEFGKLSAREARRARPPRIGPCRDELGTFATLISRIGPALTPGYEKALRTLGEGPMADLAHELENSGEAERMAAMEVNEALGYLWPRLRELATVMPDLTR
Ga0187784_1097903423300018062Tropical PeatlandSTVRFAGPDSYWDGCHEFGKLSAREAQRAGPARVGPCRDELGTFATLISRFGPTLTGARFEQALRALGEGPLIDLVRELEDGGGLERLAAMEVNEAFGYLWPRLRDLTGSLPR
Ga0187772_1019338013300018085Tropical PeatlandPDRYWDGCHEFDKLSAREALRSQPARIGPRRDELGTFATLISRFGPSLTPGFEKALRALEEGPMIDLVHELEDCGEVKRLAAMEASEALGCLWPRLRELREAMPV
Ga0187769_1073082523300018086Tropical PeatlandRDLVLTTTLQPCLQCAGAIRLGPISTVRFAGPDRYWEGCHDFGKLSAREAQRAQPARIGPHRDELGTFATLISRFGPTLARPGFEQALRTLGEGPLADLVHELEDAGELERLAAMEVNEALGYLWPRLQELA
Ga0066669_1088619913300018482Grasslands SoilGCHDSGRLSAREARRAQPARIGPRRDELGTFATLISRFVHLPPGYEQALRALGEGPMVDLVHELEGGGEVERLAAMDVVEGLGYLWPRLRELTKALPD
Ga0193701_107094323300019875SoilATVRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATLVSRFVHLPPRYEEALRALGEGPVVDLVRELEGGGEVERLAAMDVVEGLGYLWPRLEELTKVLPA
Ga0210407_1107773313300020579SoilVRFAGPDRYWDGCHDFGRLSAREAHRTQSARIGPRRDELGTFATLISRCVHLPPAYEEAMRALGEGPMVDLVHELEGGGEVERLAAMDVIEGLGYLWPRLQELTKVLSA
Ga0210403_1119601413300020580SoilLRLECAGAIRLGPVATVRFAGPDRYWDGCHDFGRLSAREAHRTQSARIGPRRDELGTFATLISRCVHLPPAYEEAMRALGEGPMVDLVHELEGGGEVERLAAMDVIEGLGYLWPRLQELTKVLSA
Ga0210395_1048373723300020582SoilDLVLTTTLQPCLQCAGAIRLGPISTVRFAGPDRYWDGCHDFGKLSAREAQRTQPARIGPRRDELGTFATLISRFGPTLTHGFGKALRTLGEGPMVDLVHELEDGGEAERLAAMEVNEALGYLWPRLQELTEVMGP
Ga0210388_1109507323300021181SoilQPCLQCAAAIRLGPIATVRFAGTDRYWDGCHDFAMLSPREARRAQPAREGPRSDELGVFGALMSRMGVGLWPRYEEALRELGEGPSVDLARRLAEDGELERLAAMEVNEALTYLWPRLSELRVAS
Ga0210393_1091536923300021401SoilTLQPCRQCAAAIRLGPIATVRFAGADRYWDGCHDFAMLSPREAQRAQPAREGPRSDELGVFGALMSRMGVGLWPRYEEALRELGEGPSVDLARRLAEDGELERLAAMEVNEALAYLWPQLGELRVAS
Ga0210385_1004267063300021402SoilAIRLGPIETVRFAGADRYWDGCHDFGKLSPREAQRAQPGRIGPRHDELGVFATLISRIGPARKQGYEEALRALGEGAMVDLVGELERGGEVTLLTAMEVDVALGHLWPRLTNCTNSSEPF
Ga0210397_1125250323300021403SoilCLQCAAAIRFGPIGTVRFAGADRYWDGCHDFGKLSTREAQKTQPVRIGPRADELGTFATLISRFVHLPPGYEDTLRALGEGPMVDLVHELEDSGEKERLAAMEVDEALGYLWPRLQELPRAGPAL
Ga0210389_1007805813300021404SoilDRYWDGCHDFGRLSAREAHRTQSARIGPRRDELGTFATLISRCVHLPPAYEEALRALGEGPAAGLVHELEGAGEVERLAAMDVVEGLGHLWPRLQELTKVLPA
Ga0210383_1015619813300021407SoilPCLQCAAAIRLGPIATVRFAGADRYWDGCHDFAMLSPREAQRAQPAREGPRSDELGVFGALMSRMGVGLWPRYEEALRELGEGPSVDLARRLAEDGELERLAAMEVNEALAYLWPQLGELRVAS
Ga0210383_1111111913300021407SoilLVLTTTLQPCLQCAGAIRLGPIGTVRFAGRDRYWDGYHDFGKLSAREAQRTQPARIGPRPDELGTFATLISRFGPTLTYRFEQALRTLGEGPMIDLVHELEDGGETERLAAMEVDEALGYLWPRLRELREVMGA
Ga0210390_1087872923300021474SoilHDFGKLSAREAQRTQPARIGPRRDELGTFATLISRFGPTLTHGFGKALRTLGEGPMVDLVHELEDGGEAERLAAMEVNEALGYLWPRLQELTEVMGP
Ga0126371_1263705213300021560Tropical Forest SoilWNGCHEFGKLSAREARKAQPARTGPRRDELGTFATLISRFGPTLTPTLEQTLRALGEGPMTDLVHDLEDSGEVKRLAAMEVNEALSDLWPQLQELTKVMPAS
Ga0247691_106492213300024222SoilMRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATVISRFAHLPPAYEEALRALGEGPVAGLVHELEGGGEVERLAAMDVVEG
Ga0207699_1013622123300025906Corn, Switchgrass And Miscanthus RhizosphereMRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATVISRFAHLPPAYEEALRALGEGPVAGRLVHELEGGGEVERLAAMDVVEGLGHLWPRLQELTKVLHA
Ga0207695_1139264113300025913Corn RhizosphereGADHYWDGCHDFARLSAREARRAQPARIGPRPDELATFATLIPRLTHLPPAYEEGLRALGDGPMVDLVHAMSGDGEVERLATMDVTGGLAYLWPRLAGLAEAPPA
Ga0207700_1058038713300025928Corn, Switchgrass And Miscanthus RhizosphereMRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATVISRFAHLPPAYEEALRALGEGPVAGRLVHELEGGGEVERLAAMDVVEGLGHLWPRLQELTKVLPA
Ga0207664_1046208243300025929Agricultural SoilTLQPCLQCAGAIRLGPIAVVRFAGPDRYWDGCHEFGKLSAREARKAQPARTGPRRDELGTFATLISRFGPTLTPTFEQALRTLGEGPAADLVHELEDGGEVKRLAAMEVNEALGYLWPQLQELTKIMPAS
Ga0207664_1073386523300025929Agricultural SoilVRGRHPAGPVAAMRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATVISRFAHLPPAYEEALRALGEGPVAGRLVHELEGGGEVERLAAMDVVEGLGHLWPRLQELTKVLPA
Ga0209239_133915613300026310Grasslands SoilGRLLARLPFRSRRDLVLTTTLQPCLQCAGAIRLGPVATVRFAGPDRYWDGCHDFGKLSAREAHRTQPARTGPRHDELGTFATLISRFAHLPPAYEQALRALGEGQMVDLVHELEDRCEVERLASMDVAEGLGYLWPRLQELTKILPP
Ga0208488_103423033300027110Forest SoilATVRFAGPDRYWDGCHDFGKLSAREAHRMQPARIGPRRDELGTFATLVSRFVHHPPGYEEALRALGEGPMVDLVYELEGGGEVERLAAMDVVEGLGHLWPRLQELRKVLPA
Ga0208324_110547413300027604Peatlands SoilVRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATLISRFVHLPPAYEEALRALGEGPMVDLVHELEGGGEVERLAAMDVVEGLGYLWPRLQELTKVLPA
Ga0209166_1009526313300027857Surface SoilAIRLGPIGTVRFAGRDRYWDGYHDFGKLSAREAQRTQPARIGPRPDELGTFATLISRFGPTLTYRFEQALRTLGEGPMIDLVHELEDGGEAGRLAGMEVDEALGYLWPRLRELREVLGP
Ga0307282_1022079413300028784SoilAGPDRYWDGCHDFGKLSAREARRTQPARTGPRHDELGTFATLISRFVRLPPRYEEALRALGEGAMVDLVRELEGGGEVERLTAMDVVEGLGYLWPRLRELTKVLPA
Ga0302221_1050033213300028806PalsaWDGCHNFGKLSAREAQRTQPARIGPRRDELGTFATLISRFGPGLTLRSEKALRSLGEGPMADLVHELDEIGEAERLAAMEVNEALGYLWPRLQELTEVMPAS
Ga0307296_1045870613300028819SoilCAGAIRLGPVATVRFAGPDRCWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATLISRFVRLPPGYQEALRALGEGPVAGLAHELEGGGEMERLAAMDVVEGLGYLWPRLRELTKVLP
Ga0307310_1008901413300028824SoilTSSAWPRLPFRSRRDLVLTTTLQPCLQCAGAIRLGPVATVRFAGPDRCWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATLISRFVRLPPGYQEALRALGEGPVAGLVHELEGGGEMERLAAMDVVEGLGYLWPRLEELTKVLPA
Ga0307312_1007030713300028828SoilVLARLPFRSRRDLVLTTTLQPCLQCAGAIRLGPVATVRFAGPDRCWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATLISRFVRLPPGYQEALRALGEGPVAGLAHELEGGGEMERLAAMDVVEGLGYLWPRLEELTKVLPA
Ga0307277_1037248523300028881SoilRDLVLTTTLQPCLQCAGAIRLGPVATVRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATLVSRFVHLPPRYEEALRALGEGPVVDLVRELEGGGEVERLAAMDVVGGLGYLWPRLEELTKVLPA
Ga0307308_1006908213300028884SoilDRCWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATLISRFVRLPPGYQEALRALGEGPVAGLVHELEGGGEMERLAAMDVVEGLGYLWPRLEELTKVLPA
Ga0302181_1013664513300030056PalsaCHDFGKLSAREAHRVQPARIGPRRDELGTFATLISRFVHLPPAYEEALRALGEGPMVGLVRELEGGGEVERLAAMDVVEGLGYLWPRLQELAKVLPA
Ga0302179_1033704423300030058PalsaYWDGCHNFGKLSAREAQRTQPARIGPRRDELGTFATLISRFGPGLTLRSEKALRSLGEGPMADLVHELDEIGEAERLAAMEVNEALGYLWPRLQELTEVMPAS
Ga0311357_1092891513300030524PalsaLPFRRRRDLVLTTTLQPCLQCAAAIRLGPIATVRFAGPDRYWDGCHDFGKLSAREAHRVQPARIGPRRDELGTFATLISRFVHLPPAYEEALRALGEGPMVGLVRELEGGGEVERLAAMDVVEGLGYLWPRLQELAKVLPA
Ga0311355_1032800413300030580PalsaAAAIRLGPIATVRFAGPDRYWDGCHDFGKLSAREAHRVQPARIGPRRDELGTFATLISRFVHLPPAYEEALRALGEGPMVGLVRELEGGGEVERLAAMDVVEGLGYLWPRLQELAKVLPA
Ga0302317_1026279523300030677PalsaFRRQRDLVLTTTLQPCVQCAAAIRLGPISTVRFAGPDHYWDGCHEFGKLSPREARRTQPARIGPRRDELGTFATLVSRLGPTLTPGYERALRTLGEGPMTDLVHELEDGGEAGRLPAMEVNEALGYLWPRLQELTEVMPAS
Ga0302325_1233832013300031234PalsaTLQPCLQCAAAIRLGPIGAVRFAGPDRYWDGCHDFGKLSAREAQKTQPTRVGPRRDELGTFATLISRFGPALTPGLEKALRTLGEGPLTDLVHELDDGGDVGRLAAMEVNEALGYLWPRLQELTGVMPPL
Ga0318534_1018495923300031544SoilCLQCAAAIRLGPIAVVRFAGPDRYWDGCHDFGKLSAREARKAQPARTGPHRDELGTFATLISRFGPTLTPTFEQALRALGEGPAADLVHELEDGGKVKRLAAMEVNEALGYLWPQLQELTKVMPAS
Ga0318538_1063520513300031546SoilTLQPCLQCAAAIRLGPIAVVRFAGPDRYWDGCHDFGKLSAREARKAQPARTGPHRDELGTFATLISRFGPTLTPTFEQALRALGEGPAADLVHELEDGGKVKRLAAMEVNEALGYLWPQLQELTKVMPAS
Ga0318515_1034748223300031572SoilRYWDGCHEFGKLSAREARRAQPPRIGPCRDELGTFATLISRIGPALTPGYEQALRTLGEGPMADLAHELENSGETERTAAMEVNEALGHLWPRLQELAAVMPDLYRVEMS
Ga0318515_1052440113300031572SoilIRLGPIGSVRFAGPDRYWDGCHEFGKLSAREARRAQPTRIGPRRDELGTFATLISRIGPALTPSYEKALRTLGEEPMADLAHELEDSGEAEHLAAVEVNEALGYLWPRLQELAAVMPDPCMPEMS
Ga0318496_1072053923300031713SoilSDGCHEFSKLSAREARRAQPTRIGPRRDELGTAALISRIGPALTPSYEKALRTLGEEPMADLAHELEDSGEAEHLAAVEVNEALGYLWPRLQELAAVMPDPCMPEMS
Ga0318554_1043998323300031765SoilLEPCLQCAAAIRLGPISSVRFAGPDRYWDGCHEFGKLSAREARRAQPPRIGPCRDELGTFATLISRIGPALTPGYEQALRTLGEGPMADLAHELENSGETERTAAMEVNEALGHLWPRLQELAAVMPDLYRVEMS
Ga0318564_1042990413300031831SoilEPCLQCAAAIRLGPISSVRFAGPDRYWDGCHEFGKLSAREARRAQPPRIGPCRDELGTFATLISRIGPALTPGYEQALRTLGEGPMADLAHELENSGETERTAAMEVNEALGHLWPRLQELAAVMPDLYRVEMS
Ga0318512_1060489623300031846SoilFAGPDRYWDGCHEFGKLSAREARRAQPPRIGPCRDELGTFATLISRIGPALTPGYEQALRTLGEGPMADLAHELENSGETERTAAMEVNEALGHLWPRLQELAAVMPDLYRVEMS
Ga0318569_1013746623300032010SoilPCLQCAAAIRLGPVAVVRFAGPDRYWDGCHDFGKLSAREARKAQPARTGPHRDELGTFATLISRFGPTLTPTFEQALRALGEGPAADLVHELEDGGKVKRLAAMEVNEALGYLWPQLQELTKVMPAS
Ga0318553_1034284023300032068SoilQCAAAIRLGPIGSVRFAGPDRYWDGCHEFGKLSAREARRAQPPRIGPCRDELGTFATLISRIGPALTPGYEQALRTLGEGPMADLAHELENSGETERTAAMEVNEALGHLWPRLQELAAVMPDLYRVEMS
Ga0307471_10136923923300032180Hardwood Forest SoilAETNVLARLPFRSRRDLVLTTTLQPCLQCAGAIRLGPVATVRFAGPDRYWDGCHDFGRLSAREARRTQPARIGPRRDELGTFATLISRFAHLPPAYEQALRALGEGQMVDLVHELEDRCEVERLASMDVAEGLGYLWPGSRN
Ga0335085_1047516113300032770SoilDLVLTTTLQPCLQCAGAIRLGPIATVRFAGPDRYWDGCHDFGKLSAREARRTQPARIGPRRDELGTFATLISRFVHLPPAYEQALRALGEGSAVDLVHELEGGGEVERLAAMDVAAGLGYLWPRLQELAKVLPG
Ga0335074_1004540323300032895SoilMNVLARLPFRTVRTLILTTTLQPCLQCAAAIRLGPIATVRFAGHDIYWDGCHDFGRLSPREARRVQAAREGPRRDELGVFATLMSRMGLGHRPRYEETLRELGDGPSVDLAHRLTDDGEFERLTAMQVDEALAYLWPRLTELRSRSCA
Ga0335074_1028138113300032895SoilQCAGAIRLGPVATVRFAGPDRYWDRCHDFGKLSAREARRSQPARIGPRRDELGTFATVISRFGHLPPGYEKGLRALGEGPMVDLVHELEDAGEVERLAAMDVTEGLGYLWPRLQELATVLPA
Ga0335074_1146439723300032895SoilLQPCLQCAAAIRLGPIATVRFAGPDPYWDGCHDFGRLSPREARRFQPARSGPRHDGLGVFASLISMLGPGLGTRYEEAMRLLGKGPVIDLVHHLQDAGEVGRLPGMEVDEALEYLWPRLQHLPSGS
Ga0335075_1003522993300032896SoilMNVLARLPFRTVRTLILTTTLQPCLQCAAAIRLGPIATVRFAGHDIYWDGCHDFGRLSPREARRVQAAREGPRRDELGVFATLVSRMGLGHRPRYEETLRELGDGPSVDLAHRLTDDGEFERLTAMQVDEALAYLWPRLTELRSRSCA
Ga0335075_1065232223300032896SoilARLPFRTQRNLVLTTTLQPCLQCAAAIRLGPIATVRFAGHDVYWDGCHDFGRLSPREARRMQAAREGPRRDELGVFATLMSRMGSSHLPRSAQALRELGEGPSVDLAHRLTDDGEVARLTSLEVDEALADLWPRLTELCPRT
Ga0335083_1093680613300032954SoilRLGPIATVRFAGPDRYWDGCHDFGKLSAREADRVQSARIGPRRDELGTFATLISRLTHLPPGYEQALRALGEGPMADLVHERDGSGEVARLAALDVVAGLGYLWPRLQELAKVLPA
Ga0335073_1091852613300033134SoilCLQCAGAIRLGPIATERFAGPDRYWDGCHDFGKLSAREANRVQSARIGPCRDELGTFATLISRLTHLPPGYEQALRALGEGPMADLVHERDGSGEVARLAALDVVAGLGYLWPRLQELAKVLPA
Ga0335073_1181181113300033134SoilDLILTTTLQPCLQCAGAIRLGPVATVRFAGRDRYWDGCHDFGRLSAREAQRTQPARIGPHRDELGTFAALISRLGYIQPAYEEKLRALGEGPMIDLVYQLRDDGEVERLVAMEVAQGLEYLWPRLVELEKALPA
Ga0334854_055172_583_9483300033829SoilAAIRLGPISTVRFAGPDHYWDGCHEFGKLSPREARRTQPARIGPRRDELGTFATLVSRLGPTLTPGYERALRTLGEGPMTDLVHELEDGGEAGRLPAMEVNEALGYLWPRLQELTEVMPA
Ga0370515_0289330_3_3833300034163Untreated Peat SoilCVQCAAAIRLGPISTVRFAGPDHYWDGCHEFGKLSPREARRTQPARIGPRRDELGTFATLVSRLGPTLTPGYERALRTLGEGPMTDLVHELEDGGEAGRLPAMEVNEALGYLWPRLQELTEVMPAS
Ga0370514_030219_1_4443300034199Untreated Peat SoilNVLARLPFRRQRDLVLTTTLQPCVQCAAAIRLGPISTVRFAGADRYWDGCHDFGKLSAREARRTQPARIGPRRDELGTFATLISRFGPALKPSLEQVLRTLGEGPMTDLVHELEDGGEAERLAAMEVDEALGYLWPRLEELTEVRRA


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.