Basic Information | |
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Family ID | F092399 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 107 |
Average Sequence Length | 51 residues |
Representative Sequence | MTFWLFSGWFQKSGAEIWSSVLASFCFWAGASKIPPHGQGLVAEGLVGAF |
Number of Associated Samples | 92 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 22.64 % |
% of genes near scaffold ends (potentially truncated) | 39.25 % |
% of genes from short scaffolds (< 2000 bps) | 78.50 % |
Associated GOLD sequencing projects | 89 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.27 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (85.047 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (18.692 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.972 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (30.841 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 21.79% β-sheet: 0.00% Coil/Unstructured: 78.21% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.27 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Watersheds Freshwater Peatland Bog Peatland Freshwater Sediment Watersheds Soil Soil Tropical Forest Soil Surface Soil Peatlands Soil Soil Agricultural Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Soil Soil Fen Bog Palsa Permafrost Forest Soil Soil Corn Rhizosphere Switchgrass Rhizosphere Soil Soil Fen Palsa Avena Fatua Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Corn Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
ICChiseqgaiiDRAFT_18221412 | 3300000033 | Soil | MTFWLFSGWDQKSGAAICSSVLLSFCFCAGASKIPPHGERLFAEGLVFAV* |
Ga0062593_1009082092 | 3300004114 | Soil | MIFWLFSGLFQKSGAEMRASLLASFCRCPGASKIPPHGRGLVAEGLVFAL* |
Ga0066676_106995031 | 3300005186 | Soil | MIFWLFSGLFQKSAPEMRLSLRVSFWRCAGASKIPPDGRRLVAEGLVFAL* |
Ga0070683_1023026811 | 3300005329 | Corn Rhizosphere | CITFWLFSGWLQKSGAEICSSVRLSFCFCDGASKIPPDGQRLVAERLIFAFQLF* |
Ga0068869_1009164582 | 3300005334 | Miscanthus Rhizosphere | CMIFWLFSGLFQKSGVEIRLSLWASFDRWPGASKIPPHGRRLVAEGLVFAL* |
Ga0070673_1021834651 | 3300005364 | Switchgrass Rhizosphere | MIFWLFSGLFQKSAPEMRLSLRLSFWRCAGASKIPPDGRRLVAEGLVFAL* |
Ga0070685_113833151 | 3300005466 | Switchgrass Rhizosphere | LFSGWFQKSGEAIWASLSASFFFWVGASKIPPDGKGLVAEGLKLAVEFF* |
Ga0070735_101650783 | 3300005534 | Surface Soil | MIFWLFSGWFQKSGCAICSSVWASFFFCAGASKIPPHGQSLFAEGQIFAV* |
Ga0070735_105349071 | 3300005534 | Surface Soil | QKSGCAICSSSLASFCFCAEASKIPPHGKRLFAEGQIFAF* |
Ga0070732_106167132 | 3300005542 | Surface Soil | CCITFWLFSGWLQKSGAETCSSVRASFFFWEGASKIPPHGQGLVAEGEIFAVEFFYGHGLSSNSNK* |
Ga0070672_1013843831 | 3300005543 | Miscanthus Rhizosphere | LRACITFWLFSGWFQKSGEEICSSLSANFFFCVGASKIPPHGQGLVAQRLVLTV* |
Ga0070686_1005239362 | 3300005544 | Switchgrass Rhizosphere | MIFWLFSGLFQKSGAEMRPSLWASFDRWPEASKIPPHGRRLVAEGLVFAL* |
Ga0070686_1016701752 | 3300005544 | Switchgrass Rhizosphere | CDQKSGEEICSSVWASFCFCAGASKIPPDGKRLFTEGLVFAI* |
Ga0068859_1005430993 | 3300005617 | Switchgrass Rhizosphere | GWFQKSGEAIWASLSASFFFWVGASKIPPDGKGLVAEGLKLAVEFF* |
Ga0068858_1015947552 | 3300005842 | Switchgrass Rhizosphere | QKPGAEVCSSILASFSFCVGASKIPPHGKSLFAEGLIFAFQLV* |
Ga0075029_1000013177 | 3300006052 | Watersheds | MTFWLFSGWFQKSGAEICASVSASFFFWAGASKIPPHGQGLVAEGLIFAFELF* |
Ga0070765_1010821123 | 3300006176 | Soil | MIFWLFSGWFQKPGAAVCSSVCWSLDFSAGASKIPPDSQGLFAEGGIPAF* |
Ga0079219_123767652 | 3300006954 | Agricultural Soil | MSFWLFSGCDQKSGDPIFSSSLFSLDFCAETSKIPPHGERLFAEGKVFAF* |
Ga0075423_116713152 | 3300009162 | Populus Rhizosphere | IFWLFSGLFQKSGAEMSASLCASFCFCAGASKIPPHGRRLVAEGLVFAL* |
Ga0116133_12162621 | 3300009623 | Peatland | MTFWLFSGLFQKSGEEICSSVFASFCFCAGESKIPPHGQGLGAEGLVGAF* |
Ga0116119_11870462 | 3300009629 | Peatland | SGWFQKSGEEICASVSVSFCFCAGASKIPPHGQGLVAEGLIRAF* |
Ga0116102_10950941 | 3300009632 | Peatland | SRITFWLFSGWVQKSAAAICCSVWASFCFCAGASKIPPDGQSLVAEGQVFAV* |
Ga0116121_11470322 | 3300009644 | Peatland | MIFWLFSGWFQKPGAAVCSSVCWSLDFSAGASKIPPHSQGLFAEGDVLAF* |
Ga0116134_10197623 | 3300009764 | Peatland | MIFWLFSGWFQKPGALVCSSTFCSLDFCAGASKIPPHGERLFAEGRVLSF* |
Ga0126380_112244952 | 3300010043 | Tropical Forest Soil | MTFWLFSGCDQKSAAAICSSSLFSLDFCPEASKIPPHGERLFAEGKVFAF* |
Ga0105239_123945032 | 3300010375 | Corn Rhizosphere | MTFWLFSGWFQKSGAAIWASLSASFFFWVGASKIHPDGKGLVAEGLELAVEFF* |
Ga0136449_1001376904 | 3300010379 | Peatlands Soil | MIFWLFPGWLQKPGAAVCSSVSWSLDFSAGASKIPPHSQGLFAEGGVLAF* |
Ga0150983_141402791 | 3300011120 | Forest Soil | MTFWLFSGWLQKSGAEIWASVWASFCLCAGASKIPPHGQGLVAEGEIFAVEFFY |
Ga0150985_1200261091 | 3300012212 | Avena Fatua Rhizosphere | MIFWLRSGLFQKSGPEMTLSLRLSFWRCAGASKIPPHGRRLVAEGLVFAL* |
Ga0181529_104203722 | 3300014161 | Bog | MIFWLFSGWLQKPGAAVCSSVCWSLDFSAGASKIPPHSQGLFAEGDVLAF* |
Ga0181532_104840141 | 3300014164 | Bog | MIFWLFSGWLQKPGAAVCSSVCWSLDLSAGASKIPPHSQGLFAEGGVLAF* |
Ga0181532_108096732 | 3300014164 | Bog | FWLFSGCDQKSGWAICASVLASFCFCAEASKIPPDGQRLFTEGQVFAV* |
Ga0181526_110070972 | 3300014200 | Bog | MTFWLFSGWFQKSGAEIWSSVLASFCFWAGASKIPPHGQGLVAEGLIGAF* |
Ga0182018_100110916 | 3300014489 | Palsa | MIFWLLPGWFQKPGAAVCSSVSWSLDFSAGTSKIPPHSQGLFAEGSVLAF* |
Ga0182013_101246504 | 3300014492 | Bog | CSNFLRSCMTFWLFSGWFQKSGAEIWSSVVASFCFCRGASKIPPHGQGLVAERLVGAF* |
Ga0182015_100100663 | 3300014495 | Palsa | MIFWLFSGWLQKSGAAVCSSNFCSLDLSAGASKIPPHGQGLIAEGRVAVF* |
Ga0182024_1000108130 | 3300014501 | Permafrost | LRACITFWLFSGWLQKSGAAICSSVVASFFFCAGASKIPPHSQGLFAEGQIFAV* |
Ga0182021_116475922 | 3300014502 | Fen | MILWLFSGWLQKSGTATCCSTFSSLDFCAGASKIPPHGERLFAEGSVLSF* |
Ga0181519_103459731 | 3300014658 | Bog | AQKSGAEVCSSILASFCFCVETSKIPPHGQGLFAEGHVCAFQLF* |
Ga0181505_110817563 | 3300016750 | Peatland | MIFWLFSGWLQKPGAAVCSSVCWSLDFSAGASKIPPHSQGLFAEGDVLAF |
Ga0187819_106824931 | 3300017943 | Freshwater Sediment | QKSGAEDCSSIFCSLDFCAGASKIPPHGERLFAEGEVLPF |
Ga0187879_100490574 | 3300017946 | Peatland | MIFWLLPGWLQKSGAAVCSSVSWSLDFSAGASKIPPHGQSLFAEGDVLAFQIVERDHSTQ |
Ga0181520_106895592 | 3300017988 | Bog | MTFWLFSGWFQKSGAEICASVVASFSFCAGASKIPPHGQGLVAEGLVGAF |
Ga0187885_102492532 | 3300018025 | Peatland | MIFWLLPGWFQKPGAAVCSSVSWSLDFSAETSKIPPHSQGLFAEGSVLAFEFV |
Ga0187863_100701651 | 3300018034 | Peatland | LSSMRLRCCMIFWLFSGWFQKPGAAVCSSVCWSLDFSAGASKIPPHSQGLFAEGGVLAF |
Ga0187883_103426281 | 3300018037 | Peatland | MTFWLFSGWFQKSGAEIWSSVLASFCFWAGASKIPPHGQGLVAEGLIGAF |
Ga0187855_100043758 | 3300018038 | Peatland | MIFWLFSGWFQKPGALVCSSTFCSLDFCAGASKIPPHGERLFAEGRVLSF |
Ga0196963_103059022 | 3300020215 | Soil | MIFWLFSGLFQKSGAEMRASLWVSFWRCPGASKIPPHGSRLVAEGLVFAL |
Ga0210399_112125291 | 3300020581 | Soil | QKSGAEIWASVSASFFFCAGASKIPPHGQGLVAEGLEFAFDLF |
Ga0210401_101618843 | 3300020583 | Soil | MTFWLLSGWFQKSGAEICSSVLASFCLCAGASKIPPHGQGLVAQREIFAV |
Ga0210400_111806802 | 3300021170 | Soil | MTFWLLSGWFQKSGAEICCSVLASFCLWAGASKIPPHGQGLVAQREIFAV |
Ga0182009_106270041 | 3300021445 | Soil | TFWLLPGWLQKSAAPICSSVLASFCFCAGASKIPPHGQSLIAEGLVGAL |
Ga0213851_12699581 | 3300021860 | Watersheds | TFWLFSGWVQKSGAEIWASVSASFFFCAGASKIPPHGQGLVAEGLEFAFELF |
Ga0224546_10289343 | 3300022515 | Soil | MIFWLLPGWFQKPGAAVCSSVSWSLDFSAGTSKIPPHSQGLFAEGSVLAF |
Ga0224554_10937691 | 3300023068 | Soil | MRLRCCMIFWLFSGWFQKPGAAVCSSVCCSLDFSAGASKIPPHSQGLFAEGGVLAF |
Ga0256681_114433334 | 3300023311 | Freshwater | MIFWLFSGWFQKPGAEVCSSMPASFRFCAETSKIPPHGQGLFAEGQVCAV |
Ga0207645_105359611 | 3300025907 | Miscanthus Rhizosphere | WFQKSGALICASVVASFCFWPGASKIPPHGQGLVAQRLVFPF |
Ga0207701_115120761 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | FWLFSGCDQKSGAAICSSVLLSFCFCAGASKIPPHGERLFAEGLVCAV |
Ga0207670_102946482 | 3300025936 | Switchgrass Rhizosphere | MIFWLFSGLFQKSGAEMRPSLWASFDRWPEASKIPPHGRRLVAEGLVFAL |
Ga0207661_109170101 | 3300025944 | Corn Rhizosphere | CITFWLFSGWLQKSGAEICSSVRLSFCFCDGASKIPPDGQRLVAERLIFAFQLF |
Ga0207661_121356982 | 3300025944 | Corn Rhizosphere | MTFWLFSGWLQKSGAEICSSLLLSFCFWAGASKIPPDGQGLVAERLIFAFQLF |
Ga0207674_104669462 | 3300026116 | Corn Rhizosphere | MTFWLFSGWDQKSGAAICSSVLLSFCFCAGASKIPPHGERLFAEGLVFAV |
Ga0209177_103605302 | 3300027775 | Agricultural Soil | LLEGLFQKSGAEICASVLASFCFCAGASKIPPHGQCLVAEGLVGAL |
Ga0209517_106655732 | 3300027854 | Peatlands Soil | RSRITFWLFSGWAQKPGAAVCSSILASFCFCAETSKIPPHGQGLFAEGQVFAVELF |
Ga0209067_100009248 | 3300027898 | Watersheds | MTFWLFSGWFQKSGAEICASVSASFFFWAGASKIPPHGQGLVAEGLIFAFELF |
Ga0209415_106731342 | 3300027905 | Peatlands Soil | MTFWLFSGWVQKPGAEVCSSILVSFCFCAETSKIPPHSQGLFAEGQVRALEFF |
Ga0209168_101293112 | 3300027986 | Surface Soil | MIFWLFSGWFQKSGCAICSSVWASFFFCAGASKIPPHGQSLFAEGQIFAV |
Ga0311365_109680642 | 3300029989 | Fen | MTFWLFSGWFQKSGAAICSSVSANFFFCAEASKIPPHGEGLVAKRLVLAV |
Ga0311336_102720193 | 3300029990 | Fen | MTFWLFSGWFQKSGAAICSSVSASFFFCVEASKIPPHGEGLVAKRLVLAV |
Ga0302181_101528812 | 3300030056 | Palsa | MIFWLLPGWFQKPGAAVCSSVSWSLDFSAETSKIPPHSQGLFAEGSVLAF |
Ga0311349_112076472 | 3300030294 | Fen | MTFWLFSGWFQKSGAAICSSVSASFFFCAEASKIPPHGEGLVAKRLVLAV |
Ga0311353_105038503 | 3300030399 | Palsa | RLSSRRLRCCMIFWLLPGWFQKPGAAVCSSVSWSLDFSAGTSKIPPHSQGLFAEGSVLAFEFV |
Ga0265745_10334761 | 3300030759 | Soil | AGLFQKSGAEVCSSNFWSLDFWPGASKIPPHGESLFAEGTVLAF |
Ga0302326_105959894 | 3300031525 | Palsa | FWLFSGWFQKPGAAVCSSVCWSLDFSAGASKIPPDSQGLFAEGGVLAF |
Ga0302326_113781581 | 3300031525 | Palsa | MIFWLFSGWFQKPGAAVCSSVCWSLDFSAGASKIPPHSQGLFAEGSVLAF |
Ga0265313_103790962 | 3300031595 | Rhizosphere | SLVMACSNFLRSCMTFWLFSGWFQKSGEDIWSSVLASFCFWAGASKIPPHGQGLVAEGLIGAF |
Ga0318572_107320731 | 3300031681 | Soil | FWLFSGWLQKSGAEICSSVLASFCFCAGASKIPPHGQCLVAEGLILAF |
Ga0310686_1155003852 | 3300031708 | Soil | MIFWLFSGWFQKPGADVCFSVSWSFDFSAGTSKIPPHSQGLFAEGSVLAF |
Ga0310813_109268452 | 3300031716 | Soil | MIFWLFSGLFQKSGAEMRASLLASFCRCPGASKIPPHGRGLVAEGLVFAL |
Ga0318493_106816381 | 3300031723 | Soil | LRSCITFWLFSGWFQKSGAPICSSILVSFCFCAGASKIPPHGQGLVAEGQKCAFQLV |
Ga0318523_106262781 | 3300031798 | Soil | MTFWLFSGLFQKSGAVMTTSLFANFSRWPGASKIPPDGRRLVAEGLVFAL |
Ga0306921_126646221 | 3300031912 | Soil | MTFWLFSGWLQKSGLEICSSVLASFSFCAGASKIPPHGQCLVAEGLVLAVEFV |
Ga0308175_1001892662 | 3300031938 | Soil | MIFWLFSGLFQKSGAEIRLSLWLSFCRWPAASKIPPDGSRLVAEGLVFAL |
Ga0318570_105882222 | 3300032054 | Soil | MTFWLFSGWLQKSGAEICSSVLASFCFCAGASKIPPHGQCLVAEGLVLAVEFV |
Ga0318533_113929921 | 3300032059 | Soil | RLRACITFWLFSGWFQKSGAAICSSLSASFFFWAGASKIPPHGQGLVAEGLVLAV |
Ga0306920_1025750622 | 3300032261 | Soil | ITFWLFSGWFQKSGAAICSSLSASFFFWAGASKIPPHGQGLVAEGLVLAV |
Ga0335085_100519834 | 3300032770 | Soil | LRSCITFWLFSGWDQKSGAEISFSVSFSFCFWVEASKIPPHGQGLVAEGLVGALLLV |
Ga0335085_105416432 | 3300032770 | Soil | MTFWLFSGWLQKSGAPICSSILFSFCFCAGASKIPPHGQRLFAEGQKFAFQLV |
Ga0335085_125522212 | 3300032770 | Soil | CMTFWLFSGWLQKSGAEICSSDWASFFFCAGASKIPPDGQGLVAEGLVCAF |
Ga0335079_100005757 | 3300032783 | Soil | MTFWLFSGWLQKSGWLICSSSLLSFCFWVGASKIPPHRERLFAEGKIFAVQFFYGH |
Ga0335079_114585521 | 3300032783 | Soil | FLRSCMTFWLFSGWFQKSGAEIWSSVLASFCFWAGASKIPPHGQGLVAEGLVGAF |
Ga0335079_120611712 | 3300032783 | Soil | MASSRRFRPCMTFWLFSGWVQKSGAEIWASVSANFFFWEGASKIPPHGQGLLAEGLKFALELV |
Ga0335078_100526073 | 3300032805 | Soil | MTFWLFSGCDQKSGCAMRSSILASFCFCAGASKIPPQGQSLFAEGLILAV |
Ga0335078_100915504 | 3300032805 | Soil | MIFWLVSGWLQKPGAAVCSSVCWSLDFSEGASKIPPDSQGLFAEGSILAF |
Ga0335078_102084252 | 3300032805 | Soil | MTFWLFSGWLQKSGAEICCSVVANFCFWAGASKIPPHGQGLVAEGLISAF |
Ga0335078_104779362 | 3300032805 | Soil | MIFWLFSGWLQKSGAPICSSTFCSLDFRVGESKIPPHGQGLFAEGVILPF |
Ga0335078_106792602 | 3300032805 | Soil | MIFWLFSGRFQKSGAEVRSSIFCSLDFSAGASKIPPDSQGLFAEGGIFAF |
Ga0335080_101042121 | 3300032828 | Soil | MTFWLFSGWVQKSGAEIWASVSANFFFWEGASKIPPHGQGLLAEGLEFALELV |
Ga0335080_109103711 | 3300032828 | Soil | MTFWLFSGWFQKSGAEIWSSVLASFCFWAGASKIPPHGQGLVAEGLVGAF |
Ga0335081_105875052 | 3300032892 | Soil | MTFWLFSGWLQKSGAEICCSLWANFCFCAGASKIPPHGEGLFAEGKVFAL |
Ga0335069_115144561 | 3300032893 | Soil | MTFWLFSGWFQKSGADICCSVLASFCFWAGASKIPPHGQGLVAEGLVSAF |
Ga0335073_101664183 | 3300033134 | Soil | MTFWLFSGWLQKSGAEIWSSVLANFSFWAGASKIPPHGQSLVAEGLIGAF |
Ga0335077_107478083 | 3300033158 | Soil | QKPGSTTFSSIFCSLDFCAGASKIPPHGERLFAEGTVLPF |
Ga0335077_109808261 | 3300033158 | Soil | MTFWLFSGWLQKSGWLICSSSLLSFCFWVGASKIPPHRERLFAEGKIFAVQFFY |
Ga0316624_108191021 | 3300033486 | Soil | SCITFWLFSGWLQKSGVPICCSTFSSLDFWVGASKIPPHGERLFAEGSVLSF |
Ga0316628_1000894833 | 3300033513 | Soil | MTFWLFSGWLQKSGVPICCSTFSSLDFWVGASKIPPHGERLFAEGSVLSF |
Ga0334837_009761_3004_3156 | 3300033823 | Soil | MIFWLFSGWFQKPGAAVCSSVCCSLDFSAGASKIPPHSQGLFAEGGVLAF |
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