NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F092389

Metagenome / Metatranscriptome Family F092389

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092389
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 42 residues
Representative Sequence AMCGFLAFIPGHLIMVVLHGWANFYSMLSGWKREPEYQE
Number of Associated Samples 103
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.77 %
% of genes near scaffold ends (potentially truncated) 89.72 %
% of genes from short scaffolds (< 2000 bps) 89.72 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (99.065 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(6.542 % of family members)
Environment Ontology (ENVO) Unclassified
(14.953 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.206 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1deeps_01316590
2JGI12270J11330_100912141
3JGI10216J12902_1019479142
4JGI25616J43925_102357191
5Ga0062385_102659022
6Ga0062385_106082571
7Ga0062389_1024276171
8Ga0062389_1044560461
9Ga0058891_14609822
10Ga0062589_1010998571
11Ga0066673_107406781
12Ga0065715_102820801
13Ga0070708_1014238412
14Ga0066681_106386802
15Ga0070733_105226772
16Ga0070732_100575041
17Ga0066701_108779071
18Ga0066903_1060822113
19Ga0075281_10319131
20Ga0070717_111648802
21Ga0075417_102279631
22Ga0075017_1005288412
23Ga0075017_1013617252
24Ga0075019_102257581
25Ga0075015_1010009851
26Ga0070765_1016065762
27Ga0075021_110163021
28Ga0066660_117028362
29Ga0075424_1017369872
30Ga0079218_108486202
31Ga0075418_112938691
32Ga0066709_1022977852
33Ga0105248_123589731
34Ga0116221_14845401
35Ga0116225_12243722
36Ga0105249_128866792
37Ga0116219_106803242
38Ga0074046_101074251
39Ga0126372_125664192
40Ga0134125_130172222
41Ga0136449_1024208841
42Ga0134121_115336202
43Ga0136631_100122135
44Ga0136634_105333871
45Ga0136621_13109422
46Ga0136632_105086341
47Ga0137389_101018251
48Ga0137363_105146063
49Ga0137363_111338861
50Ga0137390_102242474
51Ga0137395_102467503
52Ga0164298_106014882
53Ga0120125_10724033
54Ga0182033_108333133
55Ga0182032_104153071
56Ga0182038_102416351
57Ga0134112_103725313
58Ga0187891_11188421
59Ga0187804_101491582
60Ga0187881_100364001
61Ga0187855_101769341
62Ga0187862_108772261
63Ga0187859_100205021
64Ga0066662_122283383
65Ga0173479_105695721
66Ga0190264_110180202
67Ga0179592_101994041
68Ga0210399_103621662
69Ga0210388_100803434
70Ga0208686_10023869
71Ga0207704_102241984
72Ga0207683_100333636
73Ga0209267_13346302
74Ga0257177_10345481
75Ga0257172_10990922
76Ga0209806_12667392
77Ga0209904_10212502
78Ga0209388_11359361
79Ga0209448_101164013
80Ga0209656_101849703
81Ga0209517_104761541
82Ga0209067_100638642
83Ga0209415_103986193
84Ga0302145_102662081
85Ga0302219_101558641
86Ga0302225_105377621
87Ga0247827_108927972
88Ga0311363_112073161
89Ga0311332_101250996
90Ga0302188_101759361
91Ga0311334_101108621
92Ga0311339_100248011
93Ga0302275_104697091
94Ga0073994_100543061
95Ga0318555_104195653
96Ga0318560_101518003
97Ga0307474_109871441
98Ga0307475_106949354
99Ga0310907_107309721
100Ga0310885_101861342
101Ga0310902_104346921
102Ga0306920_1011723113
103Ga0335078_111245892
104Ga0335083_114972571
105Ga0335084_106921261
106Ga0335073_114445181
107Ga0334854_042263_17_133
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 40.30%    β-sheet: 0.00%    Coil/Unstructured: 59.70%
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Variant

5101520253035AMCGFLAFIPGHLIMVVLHGWANFYSMLSGWKREPEYQEExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
99.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Peatland
Freshwater Sediment
Polar Desert Sand
Watersheds
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Surface Soil
Peatlands Soil
Soil
Agricultural Soil
Permafrost
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Soil
Rice Paddy Soil
Bog Forest Soil
Thawing Permafrost
Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Fen
Palsa
Bog
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
4.7%5.6%3.7%5.6%2.8%6.5%6.5%5.6%2.8%6.5%3.7%3.7%3.7%2.8%2.8%2.8%2.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
deeps_013165902199352024SoilFPLARLWHFLALCGFLSFIPGHLIMVLLHGWQNFYSMLAGWKRDPEYLR
JGI12270J11330_1009121413300000567Peatlands SoilWIRIWHFAAMCGFLAFIPGHLIMVLLHGWANFYSMLSGWKREPEYQE*
JGI10216J12902_10194791423300000956SoilMIHFSALLGFAAFIPGHLFMVALHGWNNFASMLTGWKKDPDYLRSSDSL*
JGI25616J43925_1023571913300002917Grasslands SoilHFVAMCGFLAFIPGHLIMVVLHGWANFYSMLSGWKREPEYQE*
Ga0062385_1026590223300004080Bog Forest SoilHFAAMCGFLAFIPGHLIMVLLHGWSNFFSMLSGWKREPEYQE*
Ga0062385_1060825713300004080Bog Forest SoilAMCGFVAFIPGHLIMVVLHGWNNFYSMVTGWKRDPEYLG*
Ga0062389_10242761713300004092Bog Forest SoilAMCGFVAFIPGHLIMVLLHGWNNFYSMMTGWKRDPEYLD*
Ga0062389_10445604613300004092Bog Forest SoilAMCGFVAFIPGHLIMVALHGWNNFYSMITGWKRDPEYIE*
Ga0058891_146098223300004104Forest SoilHFAAMCGFLAFIPGHLIMVVLHGWANFYSMFSGWKREPEYQE*
Ga0062589_10109985713300004156SoilAMCGFLAFIPGHLIMVALHGWTNFVSMLVGWKRDPEYHAD*
Ga0066673_1074067813300005175SoilAMCGFLAFIPGHLIMVVLHGWNNFASMLTGWKRDPGYRVPLS*
Ga0065715_1028208013300005293Miscanthus RhizosphereGYGLVRGWHFFALCGFAAFIPGHLVMVAIHGWRNFTAMLTGWKRDPEYVKR*
Ga0070708_10142384123300005445Corn, Switchgrass And Miscanthus RhizosphereCGFLAFIPGHLVMVAIHGWDNFQSMLTGWKRHPEYLKPR*
Ga0066681_1063868023300005451SoilFAAMCGFLAFIPGHLIMVVLHGWNNFYSMLTGWKKDPEYAGD*
Ga0070733_1052267723300005541Surface SoilHFAAMCGFLAFIPGHLLMVVLHGWDNFASMLTGWKRNPGYRTPLA*
Ga0070732_1005750413300005542Surface SoilGHLIMVVLHGWSNFASMLTGWKRDPEYLPRRSSE*
Ga0066701_1087790713300005552SoilWHFAAMCGFLAFIPGHLIMVVLHGWNNFASMLTGWKRDPGYRLPAS*
Ga0066903_10608221133300005764Tropical Forest SoilLVHFLSMCALLAFIPGHLIMVVLHGWDNFSSILTGWKRHPEYVAVEREP*
Ga0075281_103191313300005897Rice Paddy SoilGFLAFIPGHVIMVVLHGWSNFASMLTGWKRDPEYLSRRSAE*
Ga0070717_1116488023300006028Corn, Switchgrass And Miscanthus RhizosphereIPGHLIMVAIHGWNNFMAMLTGWKRDPEYSDRGAKAGG*
Ga0075417_1022796313300006049Populus RhizosphereLAMCGFLAFIPGHLVMVLLHGWHNFVAMLTGWKRDPEYLKAPVER*
Ga0075017_10052884123300006059WatershedsFAAMCGFLAFIPGHLIMVLLHGWSNFFAMLSGWKRDPEYQE*
Ga0075017_10136172523300006059WatershedsWHFFAMCGFLAFIPGHLIMVLLHGWSNFFSMLSGWKREPEYQE*
Ga0075019_1022575813300006086WatershedsFHLTRLWHFAAMCGFLAFIPGHLIMVVLHGWSNFFSMLSGWKREPEYQE*
Ga0075015_10100098513300006102WatershedsRGWHFAAMCGFLAFIPGHLIMVLLHGWSNFFAMLSGWKRDPEYQE*
Ga0070765_10160657623300006176SoilAMCGFLAFIPGHLIMVLLHGWSNFYSMLSGWKREPDYQE*
Ga0075021_1101630213300006354WatershedsRLWHFAAMCGFLAFIPGHLIMVLLHGWSNVYSMLSGWKREPEYQE*
Ga0066660_1170283623300006800SoilCGFLAFIPGHLIMVVLHGWNNFYSMLTGWKKDPEYAGD*
Ga0075424_10173698723300006904Populus RhizosphereVHFVAMCGILGFIPGHLIMVGLHGWDNFVSIFTGWKRHPEYVPLGRKP*
Ga0079218_1084862023300007004Agricultural SoilMTHFAAMIGFLSFIPGHLLMVALHGWSNFYSMLTGWKSDPDYFNSRW*
Ga0075418_1129386913300009100Populus RhizosphereFLAMCSFLVFLPGHLIMVALHGWNNFRSMLTGWKRDPDYLKAL*
Ga0066709_10229778523300009137Grasslands SoilLFLSFVPGHLLMVAIHGWDNFYSMMVGWKRDPEYLRKKD*
Ga0105248_1235897313300009177Switchgrass RhizosphereRIWHFLALCGFAAFVPGHLVMVALHGWQNFVAMLTGWKRDPEYLGRKGA*
Ga0116221_148454013300009523Peatlands SoilAMCGFLAFIPGHLIMVLLHGWSNFFSMLSGWKREPEYQE*
Ga0116225_122437223300009524Peatlands SoilMKGSSGVRWIRICHFAAMCGFLAFIPGHLIMVLLHGWANFYSMLSGWKREPEYQE*
Ga0105249_1288667923300009553Switchgrass RhizosphereFVATCGFLAFIPGHLIMVALHGWKNFVSMIVGWKRDSEYHAG*
Ga0116219_1068032423300009824Peatlands SoilMKGSSGVRWIRIWHFAAMCGFLAFIPGHLIMVLLHGWANFYSMLSGWKREPEYQE*
Ga0074046_1010742513300010339Bog Forest SoilLARIWHFLAMCGFLAFIPGHLIMVALHGWKNFYSMVTGWKRDPEYWG*
Ga0126372_1256641923300010360Tropical Forest SoilRIWHFFSMVGFVAFIPGHLIMVGLHGWNNFYSMITGWKRDPEYVKTVDSK*
Ga0134125_1301722223300010371Terrestrial SoilPGHLIMVVLHGWSNFASMLTGWKRDPEYLSRRSTP*
Ga0136449_10242088413300010379Peatlands SoilRLWHFVAMCGFLAFIPGHLVMVVLHGWSNFVSMLVGWKKDPGYLR*
Ga0134121_1153362023300010401Terrestrial SoilGFLAFIPGHLIMVAVHGWTNFVSMLVGWKRDPEYRAD*
Ga0136631_1001221353300012043Polar Desert SandMCGFLAFIPGHLLMVAVHGWSNFASMLVGWKKDPEYGAPE
Ga0136634_1053338713300012046Polar Desert SandRLIHFLSMCGLLAFIPGHLIMVLLHGWDNFASMVTGWKRYPEYTSGNKS*
Ga0136621_131094223300012092Polar Desert SandMCGFLAFTPGHLVMVALHGWNNFASMLVGWKKDPEYGKPETLR*
Ga0136632_1050863413300012093Polar Desert SandMCGFLAFIPGHLVMVGLHGWNNFVSMLVGWKKTQSTG
Ga0137389_1010182513300012096Vadose Zone SoilGFLAFIPGHLIMVAIHGWNNFMAMLTGWKRDPEYVKPGDVSGD*
Ga0137363_1051460633300012202Vadose Zone SoilLAFIPGHLIMVALHGWANFYSMLSGWKREPEYQE*
Ga0137363_1113388613300012202Vadose Zone SoilMYGLLAFIPGHLVMVALHGWDNFASMLTGWKRHPEYTPSQEAR*
Ga0137390_1022424743300012363Vadose Zone SoilMCGFLAFIPGHLIMVVLHGWANFLSMLSGWKREPEYQE*
Ga0137395_1024675033300012917Vadose Zone SoilWHFAAMCGFLAFIPGHLIMVVLHGWANFLSMLSGWKREPEYQE*
Ga0164298_1060148823300012955SoilFALCGFAAFIPGHLVMVAIHGWRNFTAMLTGWKRDPEYVKR*
Ga0120125_107240333300014056PermafrostMCGFLAFIPGHLIMVLLHGWNNFYSMVTGWKRDPEYLG*
Ga0182033_1083331333300016319SoilFIPGHLIMVVLHGWDNFASMITGWKRHPEYVAAEREP
Ga0182032_1041530713300016357SoilMVRLGHFLAMCGLLAFIPGHLPLVALHGWNNCRAMLDGYKREPEYLE
Ga0182038_1024163513300016445SoilFLAMCGLLAFIPGHLLIVALHGWNNCRAMLDGYKREPEYLE
Ga0134112_1037253133300017656Grasslands SoilGFLAFIPGHLIMVVLHGWNNFASMLTGWKRDPGYRLPTS
Ga0187891_111884213300017996PeatlandRIWHFAAMCGFLAFIPGHLIMVLLHGWSNFYSMLSGWKREPEYQE
Ga0187804_1014915823300018006Freshwater SedimentFAVMAGLLFFIVGHLIMVVLHGWRNFASMLTGWKRDPEYPV
Ga0187881_1003640013300018024PeatlandFVAFIPGHLIMVLLHGWNNFYSMMTGWKRDPEYLD
Ga0187855_1017693413300018038PeatlandAMCGFLAFIPGHLIMVLLHGWSNFFSMLSGWKREPEYQE
Ga0187862_1087722613300018040PeatlandIWHFVAMCGFVAFIPGHLIMVLLHGWNNFYSMMTGWKRDPEYLD
Ga0187859_1002050213300018047PeatlandWHFAAMCGFLAFIPGHLIMVLLHGWSNFFSMLSGWKREPEYQE
Ga0066662_1222833833300018468Grasslands SoilMCGFLAFIPGHLIMVLLHGWNNFYSMLAGWKRDPEYL
Ga0173479_1056957213300019362SoilHFFALCGFAAFIPGHLVMVAIHGWRNFTAMLTGWKRDPEYVKR
Ga0190264_1101802023300019377SoilFAAFVPGHLVMVAIHGWQNFASMLTGWKRNPEYLRSRGS
Ga0179592_1019940413300020199Vadose Zone SoilCGFLAFIPGHLIMVVLHGWANFYSMLSGWKREPEYQE
Ga0210399_1036216623300020581SoilVWHFAATCGFLAFIPGHLIMVVLHGWANFYSMLSGWKREPEYQE
Ga0210388_1008034343300021181SoilMCGFLAFIPGHLIMVLLHGWSNFYSMLSGWKREPEYQE
Ga0208686_100238693300025500PeatlandMWHFAAMCGFLAFIPGHLIMVLLHGWSNFFSMLSGWKREPEYQE
Ga0207704_1022419843300025938Miscanthus RhizosphereVPGHLVMVALHGWENFVAMLTGWKRDPEYLGRKGA
Ga0207683_1003336363300026121Miscanthus RhizosphereVRIWHFLALCGFAAFVPGHLVMVALHGWQNFVAMLTGWKRDPEYLGRKGA
Ga0209267_133463023300026331SoilFIPGHLIMVVLHGWNNFASMLTGWKRDPGYRLPAS
Ga0257177_103454813300026480SoilFAAMCGFLAFIPGHLIMVVLHGWANFLSMLSGWKREPEYQE
Ga0257172_109909223300026482SoilGFLAFIPGHLIMVVLHGWANFYSMLSGWKREPEYQE
Ga0209806_126673923300026529SoilVWHFAAMCGFLAFIPGHLIMVVLHGWNNFYSMLTGWKKDPEYAGD
Ga0209904_102125023300027394Thawing PermafrostMCGFLAFIPGHLIMVVLHGWANFYSMLSGWKREPGYQE
Ga0209388_113593613300027655Vadose Zone SoilLVHFLAMCGLLAFIPGHLMMVALHGWDNFTSMLTGWKRRPEYEPQRSER
Ga0209448_1011640133300027783Bog Forest SoilMCGFLAFIPGHLIMVLLHGWSNFFSMLSGWKRDPEYQE
Ga0209656_1018497033300027812Bog Forest SoilFAAMCGFLAFIPGHLLMVVLHGWSNFFSMLSGWKREPEYQE
Ga0209517_1047615413300027854Peatlands SoilMKGSSGVRWIRIWHFAAMCGFLAFIPGHLIMVLLHGWANFYSMLSGWKREPEYQE
Ga0209067_1006386423300027898WatershedsFHLTRLWHFAAMCGFLAFIPGHLIMVVLHGWSNFFSMLSGWKREPEYQE
Ga0209415_1039861933300027905Peatlands SoilFVAMCGFLAFIPGHLVMVVLHGWSNFASMLVGWKKDPEYLR
Ga0302145_1026620813300028565BogIWHFAAMCGFLAFIPGHLIMVALHGWSNFYSMLSGWKREPEYQE
Ga0302219_1015586413300028747PalsaWHFAAMCGFLAFIPGHLIMVALHGWANFFSMFSGWKREPEYQE
Ga0302225_1053776213300028780PalsaCGFVAFIPGHLIMVSLHGWNNFYSMLTGYKRDPEYID
Ga0247827_1089279723300028889SoilFAAFVPGHLVMVALHGWQNFVAMLTGWKRDPEYLGRKGA
Ga0311363_1120731613300029922FenISMCGFVAFIPGHLIMVLLHGWNNFYSMITGWKRDPEYLD
Ga0311332_1012509963300029984FenFLSFIPGHLIMVVLHGWSNFMSMLSGWKREPEYQE
Ga0302188_1017593613300029986BogAAMCGFLAFIPGHLIMVALHGWSNFYSMLSGWKREPEYQE
Ga0311334_1011086213300029987FenMCGFVSFIPGHLLMVALHGWNNFYSMLTGWKKNPDYLAK
Ga0311339_1002480113300029999PalsaCGFLAFIPGHLIMVLLHGWSNFFSMLSGWKREPEYQE
Ga0302275_1046970913300030518BogWHFAAMCGFLAFIPGHLIMVALHGWSNFYSMLSGWKREPEYQE
Ga0073994_1005430613300030991SoilAAMCGFLAFIPGHLIMVVLHGWANFYSMLSGWKREPEYQE
Ga0318555_1041956533300031640SoilRLVHFLSMCALLAFIPGHLIMVVLHGWDNFASILTGWKRHPEYVAVEREP
Ga0318560_1015180033300031682SoilCALLAFIPGHLIMVVLHGWDNFASILTGWKRHPEYVAVEREP
Ga0307474_1098714413300031718Hardwood Forest SoilGVLCAFVLFVLGHLVMVILHGWNNFTSMLTGWKRDPEYLQ
Ga0307475_1069493543300031754Hardwood Forest SoilAMCGFLAFIPGHLIMVVLHGWANFYSMLSGWKREPEYQE
Ga0310907_1073097213300031847SoilVPGHLVMVALHGWQNFVAMLTGWKRDPEYLGRKGA
Ga0310885_1018613423300031943SoilFLAMCGFLAFIPGHLIMVVLHGWKNFVSMLVGWKRDPEYHAD
Ga0310902_1043469213300032012SoilNARTIHFLAMCGMLAFIPGHLVMVALHGWDNFASMVTGWKRHPEYVVGSK
Ga0306920_10117231133300032261SoilMCGFVAFIPGHLIMVALHGWNNFYSMITGWKRDPEYLGGRPNLR
Ga0335078_1112458923300032805SoilISMCGFLAFIPGHLIMVALHGWNNFYSMLTGWKRDPEYRG
Ga0335083_1149725713300032954SoilMCGFVAFIPGHLIMVALHGWNNFYSMITGWKRDPEYIDRA
Ga0335084_1069212613300033004SoilMCGFVAFIPGHLVMVVLHGWNNFYSMITGWKRDPEYLR
Ga0335073_1144451813300033134SoilFVAFIPGHLIMVGLHGWNNFYSMITGWKHDPEYVE
Ga0334854_042263_17_1333300033829SoilMCGFLAFIPGHLIMVALHGWANFFSMFSGWKREPEYQE


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