Metagenome / Metatranscriptome Family F092385

Overview

Basic Information

• Family ID: F092385
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 107
• Average Sequence Length: 63 residues
• Representative Sequence: GLQLEFTVEDDGVFTKPWSAAISYRRPLGEWPEMVCAENPHGYFPGKHAAVPTADKPDY
• Number of Associated Samples: 86
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 2.08 %
• % of genes near scaffold ends (potentially truncated): 84.11 %
• % of genes from short scaffolds (< 2000 bps): 87.85 %
• Associated GOLD sequencing projects: 83
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (73.832 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.972 % of family members)
• Environment Ontology (ENVO): Unclassified (34.579 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (64.486 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 16.09%
  Coil/Unstructured: 83.91%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF17200	sCache_2	10.28
PF12071	DUF3551	1.87
PF08281	Sigma70_r4_2	1.87
PF02661	Fic	1.87
PF00355	Rieske	1.87
PF13358	DDE_3	1.87
PF09587	PGA_cap	0.93
PF03466	LysR_substrate	0.93
PF03972	MmgE_PrpD	0.93
PF13450	NAD_binding_8	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.93
COG1918	Fe2+ transport protein FeoA	Inorganic ion transport and metabolism [P]	0.93
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.93
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.93
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.93
COG3038	Cytochrome b561	Energy production and conversion [C]	0.93
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93
COG3186	Phenylalanine-4-hydroxylase	Amino acid transport and metabolism [E]	0.93
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.83 %
Unclassified	root	N/A	26.17 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.83 %
Unclassified	root	N/A	26.17 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.83 %
Unclassified	root	N/A	26.17 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	14.02 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	11.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
Unclassified	root	N/A	26.17 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.10 %
Unclassified	root	N/A	26.17 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	14.02 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	10.28 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.02 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.02 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.87 %
Unclassified	root	N/A	26.17 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.87 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	10.28 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.02 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.80 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.93 %
Unclassified	root	N/A	26.17 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	8.41 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	10.28 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.02 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.87 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.41 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.93 %
Shinella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella	0.93 %
Unclassified	root	N/A	26.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	10.28 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.02 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.41 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.93 %
Shinella lacus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella lacus	0.93 %
Unclassified	root	N/A	26.17 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.93 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	10.28 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.02 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.87 %
Bradyrhizobium sp. AT1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AT1	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	8.41 %
Novosphingobium sp. Rr 2-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Rr 2-17	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.93 %
Shinella lacus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → Shinella lacus	0.93 %
Unclassified	root	N/A	26.17 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.93 %
uncultured bacterium 12AC_lac13	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 12AC_lac13	10.28 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003351|JGI26346J50198_1028397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	558
3300004092|Ga0062389_100785517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1131
3300005332|Ga0066388_104559099	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705
3300005332|Ga0066388_105028172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	672
3300005332|Ga0066388_107488352	All Organisms → cellular organisms → Bacteria → Proteobacteria	548
3300005364|Ga0070673_100185275	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1784
3300005454|Ga0066687_10401000	All Organisms → cellular organisms → Bacteria	793
3300005538|Ga0070731_10239870	All Organisms → cellular organisms → Bacteria	1203
3300005764|Ga0066903_106495017	All Organisms → cellular organisms → Bacteria	609
3300005921|Ga0070766_10263683	All Organisms → cellular organisms → Bacteria → Proteobacteria	1096

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.26%
Host-Associated	Host-Associated	3.74%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	6.54%
Plants	Host-Associated → Plants	3.74%
Terrestrial	Environmental → Terrestrial	89.72%

Category

Habitat	Taxonomy	Distribution
Cave	Environmental → Terrestrial → Cave	1.87%
Freshwater	Environmental → Aquatic → Freshwater	4.67%
Peat	Environmental → Terrestrial → Peat	1.87%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.80%
Sediment	Environmental → Aquatic → Sediment	1.87%
Soil	Environmental → Terrestrial → Soil	84.11%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Loam	Environmental → Terrestrial → Soil → Loam	9.35%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.74%

Subtype

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.10%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.87%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.87%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.87%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.74%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.67%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26346J50198_10283971	3300003351	Bog Forest Soil	LARNPDYKGNGLQLEFTVEDDGVFTKPWSAAVSYRRQGEWPEMVCAENPNEYFHGRRAAVPTADKPDF*
Ga0062389_1007855171	3300004092	Bog Forest Soil	EFTVEDDGVFTKPWSAAISYRRPLGEWPEMVCAENPDGYFHGKRAAVPTADKPDF*
Ga0066388_1045590992	3300005332	Tropical Forest Soil	DPGFARNPDYKGKGLQLEFTVEDDGVFTKPWSAAISYRRPLGEWPEMVCAENPQGHFAETHAAVPTANKPDF*
Ga0066388_1050281722	3300005332	Tropical Forest Soil	FARNPDYRGPGLQLDFTVEDEGAFTTPWSAAVSYRRPLGGWPEVSCAEDVHVYLPGRQLALPTADKPDF*
Ga0066388_1074883521	3300005332	Tropical Forest Soil	DYKGKGLQLEFTVEDVGVFTKSWSAGISYRRPLGEWPEMVCAENPNGYFHGRQAAVPTADKPDF*
Ga0070673_1001852752	3300005364	Switchgrass Rhizosphere	GLSRLGRDPGLVTNPDYRGKGLQLEFTVEDENVFTKPWSASISYRRPLGEWPEMACADSTRDYVGRAIDLPYADKPDF*
Ga0066687_104010001	3300005454	Soil	DNPDYRGKGLQLEFTVEDENVFTGPWSASISYRRPLGEWPEMACADNTNDYIARGLKVPAANKPDF*
Ga0070731_102398701	3300005538	Surface Soil	NPKYQGEGLQLDFTVEDAGVFTMPWSASISYRRPLGQWPEVSCAENPHGYFPGKHAAIPTADKPDF*
Ga0066903_1064950172	3300005764	Tropical Forest Soil	KGRGLQLEFTVEDDGVFTRPWSAAISYRRPLGEWPEMVCAENPNGYFHGKQAAVPTADKPDF*
Ga0068860_1011839901	3300005843	Switchgrass Rhizosphere	GLAANPDYRGKGLQLEFMVEDESVFTKAWSASISYRRPLGEWSEMVCADSTRDYVGRAIALPHADKPDF*
Ga0070766_102636833	3300005921	Soil	LQLEFTVEDAGVFTTPWSATITYRRPLGEWPEVACAENRQFYPGKYAAVPTADKPDF*
Ga0070766_108833852	3300005921	Soil	MLVEGAPLLLRPQPRYRGKGLQLEFTVEDDGVFTEPWSAAISYRSPEMACAETTRDFLAGGAVKVPTADKPDF*
Ga0066696_104848953	3300006032	Soil	YTGKGLQLEFTVEDENVFTGPWSASISYRRPLGEWPEMACADNTNDYIARGLKVPAANKPDF*
Ga0075029_1004165531	3300006052	Watersheds	DDGVFTGPWSASISYRRPIGAWPEMVCAENPTEHFSGKRAAIPTADRPDF*
Ga0070765_1019928562	3300006176	Soil	DGVFTKPWSAAISYRRPLGEWPEMACAETTRDLFTGGAVKVPTADKPDF*
Ga0075428_1017940892	3300006844	Populus Rhizosphere	QKGLSRLGRDPGLAANPDYRGKGLQLEFTVEDGEVFTAPWSAGISYRRPSGEWPEMACADNPRDLVGRTLELPQASKPDF*
Ga0126373_114303792	3300010048	Tropical Forest Soil	LDPNYRDKALQLQFTVEDQGVFTMAWSATITRRRSSSEWPEFVCVENPHGYFPGKHAAVPTAEKPDF*
Ga0126373_116312891	3300010048	Tropical Forest Soil	KGKGLQLDFTVEDDGVFPKPWSAAISYRRPIGEWPEIVCAENPQGYFRGKRTALPTADKPDF*
Ga0126373_119679672	3300010048	Tropical Forest Soil	NSDPGFAPNPNYRGNGLQLQFTVKDEGVFTMPWSAAITYRRPLGEWPEMVCAENPHGYYPGKYAAVPTAEKPDF*
Ga0126376_118703461	3300010359	Tropical Forest Soil	GVGIDLGYRGKALQVQFTVEDENVFTEPWSAAISYRRPLGEWPEMACADNTNDYIGRGLKTPTATKPDF*
Ga0126376_129851961	3300010359	Tropical Forest Soil	GVFTGPWSAAISYRRPLGQWPEMACAENNREYFSGRQAAVPAAVKPDF*
Ga0126372_108317602	3300010360	Tropical Forest Soil	EFTVEDDGVFTKPWSGAISYRRPLGEWPEMVCAENPDGHFPGKRTAVPTANKSDF*
Ga0126372_111001362	3300010360	Tropical Forest Soil	FARNPDYKGKGLQLEFTVEDDGVFTKPWSAAISYRRPLGEWPEMVCAENPQGHFPETHAAVPTADKPDF*
Ga0126372_112482261	3300010360	Tropical Forest Soil	ARNPDYKGKGLQLEFTVEDDGVFTKPWSAAISYRRPLGEWPEMVCAENPQGYFPGTHAAVPTADKPDF*
Ga0126372_118147951	3300010360	Tropical Forest Soil	GLSRLGRDPGLDANPDYRGQGLQLEFTVEDENVFTKPWSAAVSYRRPLGDWPEMACADTTRDYSGRALAPPKADKPDF*
Ga0126379_124881881	3300010366	Tropical Forest Soil	VEDDGVFTRPWSAAISYRRPLGEWPEMVCAENPNGYFHGKQAAVPTADKPDF*
Ga0126379_137876172	3300010366	Tropical Forest Soil	KGLSRLGRDPGLAANPDYRGKGLQLDFTVDDENVFFKPWSASISYRRPSGDWPEMVCADNTNDYIGRAINAPKADKPDF*
Ga0126381_1034798831	3300010376	Tropical Forest Soil	PGFVSNPDYKGKGLQLDFTVEDGDVFTKPWWASISYRRPIGEWPEIVCAENPQGYFRGKRTALPTADKPDF*
Ga0126381_1035301222	3300010376	Tropical Forest Soil	GLLSDPDYKGKGLQLEFTVEDEGVFTRPWSAGISYRRPRGEWPEMVCAENPDGYFRGRHVAVPTAATPDF*
Ga0136449_1016596071	3300010379	Peatlands Soil	FTVEDDGVFTKPWSAAVSYRRPSGEWPEMACAENPHKYNTEKDATAPTADKPDF*
Ga0126383_105625802	3300010398	Tropical Forest Soil	LQLEFTVEDDGVFTKPWSAAISYRRPLGEWPEMVCAENPQGHFAETHAAVPTADKPDF*
Ga0126350_116536361	3300010880	Boreal Forest Soil	RNYKGSGLALQFTVEDDGVFTTPWTAGITYRRPLGGWPEMVCAENPHKYRDGKAASLPTADGPDF*
Ga0150983_140040402	3300011120	Forest Soil	DEGVFTKPWSAAISYRRPLGQWPEMACAETTRDFFSGKAVGVPTANKPDF*
Ga0137390_110994791	3300012363	Vadose Zone Soil	RNPDYKGPGLQLEFTVEDEGVFTKPWSASISYRRPLGDWPEMVCAENPHEYFSGRHAATPTAVKPDF*
Ga0137390_114182701	3300012363	Vadose Zone Soil	DGVFTKPWSAAISYRRPLGEWPEMACAENPDGYFPGKHAAVPTADKPDF*
Ga0137407_106268402	3300012930	Vadose Zone Soil	PGLQLEFTVEDEGVFTRPWSAAISYRRPLGQWPEMACAENNREYFSGRHIAVPTAVTPDF
Ga0137410_100852174	3300012944	Vadose Zone Soil	DYRGKGLQLEFTVEDGGVFTKTWSAAISYRRPLGEWPEMACADNTHDYLGRGIKPPQAAKPDF*
Ga0126369_114025231	3300012971	Tropical Forest Soil	RDPGFARNPDYKGKGLQLEFTVEDDGVFTKPWSAAISYRRPLGEWPEMVCAENPQGHFPETHAAVPTADKPDF*
Ga0126369_126495292	3300012971	Tropical Forest Soil	TVEDDGVFTKPWSAAISYRRPLGEWPEMACAENPQGHFPETHAAVPTAGKQDF*
Ga0181535_104544221	3300014199	Bog	EDDGVFTKPWSAAISYRRPLGEWPEMACAETTRDFFSGGAVKVPTADKPDF*
Ga0181526_110821313	3300014200	Bog	GLQLEFTVEDDGVFTKPWSAAISYRRPLGEWPEMACAETTRDFFSGGAVKVPTADKPDF*
Ga0182018_102066742	3300014489	Palsa	DGVFTKPWSASISYRRPLGEWPEMACAETTRDFFTGGAVKVPTADKPDF*
Ga0182018_103563902	3300014489	Palsa	VSNYLQLEFTVEDDGVFAKRSAAVSYRRQGEWPEMLYAENPNEYFHGWRAAVPTADNPDF
Ga0180062_10107631	3300014879	Soil	DPGLIANPDYRGQGLQLEFTVEDGGVFTAPWSAGISYRRPSGEWPEMACADNPRDLVGRTLDLPQASKPDF*
Ga0182036_102846173	3300016270	Soil	VEDEGVFTRPWSAGISYRRPRGDWPEMVCAENPDGYFRGRHVAVPAAATPDF
Ga0182034_120625991	3300016371	Soil	QLEFTVEDEGVFTRPWSAGISYRRPLGEWPEMVCAENPDGYFRGRRVAIPTAATPDF
Ga0182037_109782542	3300016404	Soil	GRDPGFVSNPDYKGKGLQLDFTIEDGVVFTKPWSASISYRRPIGEWPEVVCAENPQGYFRGKRTALPTADKPDF
Ga0187783_104488411	3300017970	Tropical Peatland	VEDQGVFTMPWSATITRRRSSSEWPEFVCVENPNGYFPGKHAAVPAADRSDF
Ga0187783_113043981	3300017970	Tropical Peatland	VSGNGLELDPKYADRALQLVFTVEDAGVFTMPWTATITRRRSSSDWLEFVCAENPNGYFPGKQTAIPTADRPDF
Ga0187782_103222691	3300017975	Tropical Peatland	GLQLEFTVEDDGVFTKPWSAAISYRRPLGEWPEMVCAENPHGYFPGKHAAVPTADKPDY
Ga0187769_110794281	3300018086	Tropical Peatland	KGLQLEFTVEDNGVFTGPWSAAVSYRRPLGEWPEVACADNLGGFLSGKRVAAPAANKPDF
Ga0210395_102503481	3300020582	Soil	NPAYRGEGLQLEFTVEDDGVFTKPWSAAISYRRPLGEWPEMACAETTRDFFTGGAVMVPTADKPDF
Ga0210405_114300041	3300021171	Soil	QNSDPGLARNRDYKGKGLQLEFTVEDEGVFTTPWSAAISYRRPLGQWPEMVCAETRHGYSPGKDTEVPTAEKPDF
Ga0210396_103959553	3300021180	Soil	EGLQLEFTVEDEGVFTKPWSAAISYRRPVGQWPEMACAETTRDFFSGKTVGVPTANKPDF
Ga0210393_106594612	3300021401	Soil	MGKGLQLEFTVEDDSVFTSPWSAAVSYRRPLGEWPEVACAENPDGYWPGRHVAAPTADKPDF
Ga0210387_115662132	3300021405	Soil	EFTVEDDGVFTKPWSAAISYRRPLGEWPEMACAETTRDLFTGGAVKVPTADKPDF
Ga0210383_108642141	3300021407	Soil	EDEGVLTQPWSASISYRRPLGDWPEMACAENSAGHFGGEKAPAMPIAGKPDF
Ga0187846_100877963	3300021476	Biofilm	YRGPGLQLEFTVEDEGVFTKPWSAAISYRRPLGQWPEMACAENNREYFSGRQAAVPTAVKPDF
Ga0187846_104905811	3300021476	Biofilm	LARNPDYKGKGLQLEFTVEDDGVFTRSWSAAISYRRPLGGWPEMVCAENPQGHFPGTHAAVPTADKPNF
Ga0210398_101862874	3300021477	Soil	LQLEFTVEDAGVFTTPWSATITYRRPLGEWPEVACAENRQFYPGKYAAVPTADKPDF
Ga0210402_117285002	3300021478	Soil	EFTVEDGGVFTKPWSAAISYRRPLGEWPEMVCAENPNGYFHGTRAAVPTADKLDF
Ga0126371_138382881	3300021560	Tropical Forest Soil	VEDDGVFTKPWSAAISYRRPLGEWPEMVCAENPHGYFPGKHAAVPTADKPDF
Ga0213853_103898062	3300021861	Watersheds	LEFTVEDDGVFTRPWSASISYRRPLGAWPEMVCAETTHDFFTGTAVRMPIADKPDF
Ga0242673_11396951	3300022716	Soil	GLTRNPDYKGEGLQLEFTVEDEGVFTKPWSAAISYRRPLGQWPEMACAETTRDFFSGKTVGVPTANKPDF
Ga0224572_10538812	3300024225	Rhizosphere	DPGLARNPDYKGNGLQLEFTVEDDGVFTKPWSAAVSYRRQGEWPEMVCAENPNEYFHGRRAAVPTADKPDF
Ga0257154_10635053	3300026467	Soil	PNYKGKGLQLEFTVEDDSIFTGPWSAAVSYRRPLGEWPEVACAENANGHLPGRRVAAPTADKPDF
Ga0257159_10545761	3300026494	Soil	GVFTKPWSASISYRRPLGEWPEMVCAENPHEYFSGRHAAVPTAVNPDF
Ga0257168_10847131	3300026514	Soil	DDGVFTKPWSAAISYRRPLGEWPEMVCAENPDGYFPGKHAAVPTADKPDF
Ga0209530_11966441	3300027692	Forest Soil	DYKGKGLQLEFTVEDDVFTKPWSAAISYRRPLGEWPEMACAENPDGYFPGRRAAVPTADKPDF
Ga0209579_101551531	3300027869	Surface Soil	PGFAPNPKYQGEGLQLDFTVEDAGVFTMPWSASISYRRPLGQWPEVSCAENPHGYFPGKHAAIPTADKPDF
Ga0209283_106642031	3300027875	Vadose Zone Soil	DYKGPGLQLEFTVEDEGVFTKPWSASISYRRPLGDWPEMVCAENPHEYFSGRHAATPTAVKPDF
Ga0308309_115139911	3300028906	Soil	PGFVRDPDYRGPGLQLDFTVEDEGAFTMPWGASISYRRPLGNWPEMACAEARDYFPGKRVATPTADKPDF
Ga0311338_113423241	3300030007	Palsa	SDPGFARDLNYRGKGLQLEFTVEDEGVFTKPWSAAVSYRRPLAPLGQWPEMVCAETTHDAFTGTAVRLPTADKPDF
Ga0265760_101575791	3300031090	Soil	NGLQLEFTVEDDGVFTKPWSAAVSYRRQGEWPEMVCAENPNEYFHGRRAAVPTADKPDF
Ga0318528_106480851	3300031561	Soil	VVGRVGGANGLELDPNYRDEALQLQFTVEDEGVFTMPWSATITRRRSSSEWPEFVCVENPHGYFPGKHAAVPTADKPDF
Ga0318573_102993502	3300031564	Soil	FAPDPNYRGQGLQLQFTVEDEGMFTTPWSAAVTYQRPLGEWREMACAENPHGYFRGKRAAIPTADKPDF
Ga0310686_1019920053	3300031708	Soil	ARDANDKGKGLRLEFTVEDGGVFTMPWSASVTYRRPLGVWPEMVCADTTHELFTGREIEVPRADKPDF
Ga0310686_1129226741	3300031708	Soil	DPGFRRNPDDKGEGLQLEFTVEDDGVFTKPWSAAVSYRRPLGEWLEMVCAENPDGYFPGQHVVVPTAANSDF
Ga0306917_106387453	3300031719	Soil	EDEGVFTRPWSAGISYRRPRGDWPEMVCAENPDGYFRGRHVAVPAAATPDF
Ga0306917_109604082	3300031719	Soil	PDYKGKGLQLDFTIEDGVVFTKPWSASISYRRPIGEWPEVVCAENPQGYFRGKRTALPTADKPDF
Ga0318501_103319611	3300031736	Soil	PDYKGEGLQLEFTVEDEGVFTRPWSAGISYRRPRGDWPEMVCAENPDGYFRGRHVAVPAAATPDF
Ga0306918_110162261	3300031744	Soil	EGVFTRPWSAGISYRRPLGEWPEMVCAENPDGYFRGRRVAIPTAATPDF
Ga0318535_100789123	3300031764	Soil	TRPWSAGISYRRPRGDWPEMVCAENPDGYFRGRHVAVPAAATPDF
Ga0318546_108504912	3300031771	Soil	GLQLEFTVEDDGVFTKPWSAAISYRRPLGEWPEMVCAENPQGHFPETHAAVPTADKPDF
Ga0318498_105074962	3300031778	Soil	GLLPDPDYKGKGLQLEFTVEDEGVFTRPWSAGISYRRPRGDWPEMVCAENPDGYFRGRHVAVPAAATPDF
Ga0318548_104026632	3300031793	Soil	PDYKGRGLQLEFTVEDDGVFTRPWSAAISYRRPLGEWPEMVCAENPNGYFHGKQAAVPTADKPDF
Ga0307478_104476093	3300031823	Hardwood Forest Soil	DGVFTMPWSATITRRRSSSEWPEFVCAENPNGYFPEKHTAVPTADKPDF
Ga0318511_102732501	3300031845	Soil	GGGNGLELDPNYRDEALQLQFTVEDEGVFTMPWSATITRRRSSSEWPEFVCVENPHGYFPGKHAAVPTADKPDF
Ga0318511_103705761	3300031845	Soil	SSDPGFAPDPNYRGQGLQLQFTVEDEGMFTTPWSAAVTYQRPLGEWREMACAENPHGYFRGKRAAIPTADKPDF
Ga0318536_104179711	3300031893	Soil	PDYKGKGLQLEFTVEDEGVFTRPWSAGISYRRPRGDWPEMVCAENPDGYFRGRRVAIPTAATPDF
Ga0318551_107984701	3300031896	Soil	YKGEGLQLEFTVEDEGVFTRPWSAGISYRRPRGDWPEMVCAENPDGYFRGRHVAVPAAATPDF
Ga0318520_103740621	3300031897	Soil	LGRDPGFVSNPDYKGKGLQLDFTVEDGVVFTKPWSASISYRRPIGEWPEIVCAENPQGYFRGKRTALPTADKPDF
Ga0306921_121949322	3300031912	Soil	RVVGRVGGGNGLALDPNYRDKALQLQFTVEDEGVFTMPWSATITRRRSSSEWPEFVCVENPHGYFPGKHAAVPTADKPDF
Ga0310913_101478674	3300031945	Soil	EGLQLEFTVEDEGVFTRPWSAGISYRRPRGDWPEMVCAENPDGYFRGRHVAVPAAATPDF
Ga0310910_113403491	3300031946	Soil	SDPGFAPDPNYRGQGLQLQFTVEDEGMFTTPWSAAVTYQRPLGEWREMACAENPHGYFRGKRAAIPTADKPDF
Ga0310909_109040362	3300031947	Soil	DPNYRDEALQLQFTVEDEGVFTMPWSATITRRRSSSEWPEFVCVENPHGYFPGKHAAVPTADKPDF
Ga0306926_100987735	3300031954	Soil	RLGRDPGFVSNPDYKGKGLQLDFTVEDGVVFTKPWSASISYRRPIGEWPEIVCAENPQGYFRGKRTALPTADKPDF
Ga0306926_105297673	3300031954	Soil	RDEALQLQFTVEDEGVFTMPWSATITRRRSSSEWPEFVCVENPHGYFPGKHAAVPTADKPDF
Ga0318530_102398682	3300031959	Soil	PDPDYKGKGLQLEFTVEDEGVFTRPWSAGISYRRPRGDWPEMVCAENPDGYFRGRHVAVPAAATPDF
Ga0318532_100953193	3300032051	Soil	FTRPWSAGISYRRPRGDWPEMVCAENPDGYFRGRHVAVPAAATPDF
Ga0318575_107079921	3300032055	Soil	TVEDEGVFTRPWSAGISYRRPLGEWPEMVCAENPDGYFRGRHVAVPAAATPDF
Ga0318504_105812532	3300032063	Soil	SYRDEALQLQFTVEDEGVFTMPWSATITRRRSSSEWPEFVCVENPHGYFPGKHAAVPTADKPDF
Ga0306924_110511021	3300032076	Soil	SDPGFAPNPNYRGEGLQLDFTVDDAGAFTMPWSASISYRRPLGQWPEVVCAENPHGYFPGKHAAIPTADKPDF
Ga0306920_1016205691	3300032261	Soil	GLARNPDYRGKGLQLEFTVEDDGVFTKSWSAGISYRRPLGEWPEMVCAENPNGYFHGRQAAVPTADKPDF
Ga0348332_102627183	3300032515	Plant Litter	EFTVEDEGVFTKPWSAAISYRRPLGQWPEMACAETTRDFFTGKTVGVPTAVKPDF
Ga0348332_134262591	3300032515	Plant Litter	RDPGLVPNPNYKGQGLQLDFTVEDAEVFTTPWSATVSYRRPLGDWPEVACTESAGGYLPGRHVAPPTANKSDF
Ga0326723_0509369_341_553	3300034090	Peat Soil	PGLASNPDYKGKGLQLDFTVEDDGVFAKPWSASISYRRPLGEWPEMACADNTHDYVGRGIKLPQASKPDF