NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F092351

Metagenome Family F092351

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092351
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 41 residues
Representative Sequence MKLEDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKINDK
Number of Associated Samples 76
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.93 %
% of genes near scaffold ends (potentially truncated) 16.82 %
% of genes from short scaffolds (< 2000 bps) 69.16 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.458 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(26.168 % of family members)
Environment Ontology (ENVO) Unclassified
(72.897 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(80.374 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60
1GS312G0146KB_00360690
2BBAY92_100112462
3GOS2245_10865694
4GOS2216_100981062
5Ga0073579_12883712
6Ga0066849_100818711
7Ga0076919_103590216
8Ga0078893_103884313
9Ga0075474_100835833
10Ga0075478_101895302
11Ga0075445_100051075
12Ga0075445_101064542
13Ga0075445_101924551
14Ga0068470_11301721
15Ga0068471_15717183
16Ga0068500_13431052
17Ga0075444_102819952
18Ga0075460_101336242
19Ga0066367_13194982
20Ga0114996_101937602
21Ga0114996_103562643
22Ga0118722_13162062
23Ga0114993_112366291
24Ga0114994_100349054
25Ga0114994_101309824
26Ga0114994_102274623
27Ga0114994_102807982
28Ga0114994_105473382
29Ga0115000_100391271
30Ga0115000_100452887
31Ga0115002_108396233
32Ga0114999_100578733
33Ga0114999_100731811
34Ga0136655_10034014
35Ga0129324_101002452
36Ga0133547_101287002
37Ga0133547_102495852
38Ga0133547_105050851
39Ga0133547_106057775
40Ga0160423_102288803
41Ga0160423_105293882
42Ga0163109_107043692
43Ga0181413_12127181
44Ga0181565_106372413
45Ga0181552_106086882
46Ga0181607_104795231
47Ga0181590_102737383
48Ga0181606_103609941
49Ga0181563_105706511
50Ga0181595_101176372
51Ga0181603_103023001
52Ga0211658_11180622
53Ga0211497_100753332
54Ga0211583_101277943
55Ga0211636_101374603
56Ga0211532_103986311
57Ga0211659_100167093
58Ga0211496_100016078
59Ga0211699_102306882
60Ga0211528_102112892
61Ga0211576_1000150813
62Ga0211576_101002863
63Ga0211518_100561675
64Ga0211574_100076748
65Ga0211574_100534143
66Ga0211691_101549611
67Ga0211638_101028902
68Ga0211486_100234694
69Ga0211577_100241467
70Ga0211585_100317095
71Ga0206682_100336735
72Ga0222719_104231762
73Ga0222719_108283271
74Ga0233426_100488784
75Ga0233432_1000939412
76Ga0233432_100138333
77Ga0233432_102646362
78Ga0233432_103592303
79Ga0208542_11128782
80Ga0208547_11382222
81Ga0209630_103348012
82Ga0209335_101631833
83Ga0209383_11742182
84Ga0209383_11867012
85Ga0209710_10349843
86Ga0209709_101395742
87Ga0209090_100632391
88Ga0209090_104545832
89Ga0209090_105651682
90Ga0209089_100326454
91Ga0209402_100539764
92Ga0228646_11121841
93Ga0308025_10866513
94Ga0308025_11061011
95Ga0308025_11273783
96Ga0308010_10609082
97Ga0307488_100039297
98Ga0307488_101159993
99Ga0307488_102940972
100Ga0307488_104221133
101Ga0307488_104830011
102Ga0307488_108501351
103Ga0315316_104831752
104Ga0315316_114703211
105Ga0315315_100655493
106Ga0310345_100379908
107Ga0310345_103126501
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 51.47%    β-sheet: 0.00%    Coil/Unstructured: 48.53%
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Variant

510152025303540MKLEDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKINDKExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
6.5%93.5%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Seawater
Marine
Marine
Surface Seawater
Marine
Seawater
Marine
Aqueous
Seawater
Marine Surface Water
Sackhole Brine
Freshwater To Marine Saline Gradient
Seawater
Marine Estuarine
Salt Marsh
Marine
Marine
Estuarine Water
M
Pelagic Marine
Seawater
Macroalgal Surface
26.2%2.8%4.7%4.7%5.6%3.7%7.5%23.4%3.7%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GS312G0146KB_003606902189573027Marine EstuarineMKFQIEDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKINDIS
BBAY92_1001124623300000947Macroalgal SurfaceMKFQIDNFIDFHVLFMTICILIAYEYIMNSSNIIIEKNK*
GOS2245_108656943300001966MarineMKFQIEDFIDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKLKNK*
GOS2216_1009810623300001972MarineMKIDDFIDYHTLFMTMCIVIAYRYITTDTNIILEKNIQ*
Ga0073579_128837123300005239MarineMKFQIEDFIDFHVLFMTICVLIAYEYIMNGTNIIVEKKLN*
Ga0066849_1008187113300005430MarineMKFQIDDFIDFHVLFMTICILIAYEYIMNGSNIIIEKKLNDKL*
Ga0076919_1035902163300005731MMKFQIEDFIDFHVFFMTICILIAYEYIMNGTNIIIEKKINDKL*
Ga0078893_1038843133300005837Marine Surface WaterMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKINDIS*
Ga0075474_1008358333300006025AqueousDFIDFHVLFMTICILIAYEYIMNGTNIIIEKKLNDIS*
Ga0075478_1018953023300006026AqueousMKLDDFIDFHVLFMTICILIAYEYIMNGTNIIIEKKLNDIS*
Ga0075445_1000510753300006193MarineMTIDDFIDFHALFLTASAVIAYKYITKENNVIFERKKI*
Ga0075445_1010645423300006193MarineMNFKIDDYIDFHILFMTISIVIAYKYITDESNIIVEKKN*
Ga0075445_1019245513300006193MarineMNLKSFKIENYIDFDVLFMTICILIFLEYIMNHSDIIIEKKYTDK*
Ga0068470_113017213300006308MarineMKIEDIIDYHTLFMTMCIVIAYKYITIEENIILEKKIQ*
Ga0068471_157171833300006310MarineMKIEDIIDYHTLFMTMCIVIAYKYITIEENIILEKKLQ*
Ga0068500_134310523300006332MarineMNIKIENYIDFHVLFMTICILIAYEYIMNNSNIIVEKKIKDI*
Ga0075444_1028199523300006947MarineMNFKIEDYIDFHVLFMTISITIAYKYITNESNIIVEKKDFRTSK*
Ga0075460_1013362423300007234AqueousMKFQIDDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKLNDKL*
Ga0066367_131949823300007291MarineMDIEDYIDFKVLFTTMCIVIAYKYITLEEDIIIERKLS*
Ga0114996_1019376023300009173MarineMTFKDFQIDDYIDFDTLFMTICILIFYEYIMNHSDIIIEKKYTDK*
Ga0114996_1035626433300009173MarineMNLKDFKLEDYIDFHVLFMTMCILVLYHYIMNDSNIIIEKKKP*
Ga0118722_131620623300009376MarineMDIEDYIDFKVIFTTMCIVIAYKYITHDENIIIEKKI*
Ga0114993_1123662913300009409MarineMNFKIEDYIDFHVLFMTISIIIAYKYITDESNIIV
Ga0114994_1003490543300009420MarineMNLKSFKIENYIDFDTLFMTICILIFYEYIMNHSDIIIEKKYTDK*
Ga0114994_1013098243300009420MarineMNFEIEDYIDFHVLFVTMCIVIAYRYITDEQDIIVERKID*
Ga0114994_1022746233300009420MarineMTFKIENYIDFHVLFMTICILIAYEYIMNGSNIIIEKKIKDIS*
Ga0114994_1028079823300009420MarineMKFEIENYIDFHVLFSTICIVIAYKYITNEQNIIIEKKYNY*
Ga0114994_1054733823300009420MarineKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKK*
Ga0115000_1003912713300009705MarineMNFKIEDYIDFHVLFMTISIIIAYKYITDESNIIVEKKGIK*
Ga0115000_1004528873300009705MarineMNFKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKK*
Ga0115002_1083962333300009706MarineMNLKDFKLEDYIDFHVLFMTMCILVLYHYVMNDSNIIVEKKINDK*
Ga0114999_1005787333300009786MarineMNFKDFKIDDLIDFHVLFMTMCILIAYHYIMNDSNIIVEKKINDK*
Ga0114999_1007318113300009786MarineKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKKN*
Ga0136655_100340143300010316Freshwater To Marine Saline GradientMKLEDFIDFHVLFMTICVLIAYEYIMNGTNIIVEKKINDK*
Ga0129324_1010024523300010368Freshwater To Marine Saline GradientMKFQIEDFIDFHVLFMTICVLIGYEYIMNGTNIIVEKKINDKL*
Ga0133547_1012870023300010883MarineMNFKIEEYIDFHVLFMTISIIIAYKYITDESNIIVEKRNINK*
Ga0133547_1024958523300010883MarineMNFKIEDYIDFHVLFMTISLIIAYKYITDGNNIIVEKKN*
Ga0133547_1050508513300010883MarineMNSKIEDYIDFHVLFMTISIIIAYKYITEESNIIIEKKEIK*
Ga0133547_1060577753300010883MarineMNFKVEDYIDFHVLFMTITIIIAYKYITDEVNIIIETQT
Ga0160423_1022888033300012920Surface SeawaterMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIIEKKINDIS*
Ga0160423_1052938823300012920Surface SeawaterMKFQIDDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKLNDK*
Ga0163109_1070436923300012936Surface SeawaterMKFQIDDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKLNDK*
Ga0181413_121271813300017765SeawaterMKLEDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKLKDK
Ga0181565_1063724133300017818Salt MarshMKFQIEDFIDFHVLFMTICILIAYEYIMNSSNIIVE
Ga0181552_1060868823300017824Salt MarshMKLDDFIDFHVLFMTICILIAYEYIMNGTNIIIEKKLNDIS
Ga0181607_1047952313300017950Salt MarshMKLDDFIDFHVLFMTICILIAYEYIMNGSNIIIEKKIKDIS
Ga0181590_1027373833300017967Salt MarshMKLDDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKINDKL
Ga0181606_1036099413300018048Salt MarshYIDFHVLFMTICILIGYEYIMNNSNIIIEKKIKDI
Ga0181563_1057065113300018420Salt MarshMKLDDFIDFHVLFMAICILIAYEYIMNGSNIIVEKKLNDIS
Ga0181595_1011763723300020053Salt MarshMNIKIENYIDFHVLFMTICILIGYEYIMNNSNIIIEKKIKDI
Ga0181603_1030230013300020174Salt MarshMNIKIENYIDFHVLFMTICILIGYEYIMNNSNIIIEK
Ga0211658_111806223300020274MarineNMRFQIEDFIDFHVLFMTICILIAYEYIMNESNIIVEKKIK
Ga0211497_1007533323300020394MarineMKLEDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKLKDK
Ga0211583_1012779433300020397MarineMRFQIEDFIDFHVLFMTICILIAYEYIMNESNIIVEKKIKG
Ga0211636_1013746033300020400MarineMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKIKDKL
Ga0211532_1039863113300020403MarineMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKINDKL
Ga0211659_1001670933300020404MarineMRFQIEDFIDFHVLFMTICILIAYEYIMNESNIIVEKKIK
Ga0211496_1000160783300020405MarineMKFQIDDFINFHVLFMTICILIAYEYIMNGSNIIIEKKIKDK
Ga0211699_1023068823300020410MarineMKIENIIDYHTLFMTMCIVIAYKYITIEENIILEKKI
Ga0211528_1021128923300020417MarineMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKNK
Ga0211576_10001508133300020438MarineMKLEDFIDFHILFMTICILIAYEYIMGGTNIIIEKKIKDK
Ga0211576_1010028633300020438MarineMKLDDFIDFHVLFTTICIVIAYQYITNEMNIIVEKKISL
Ga0211518_1005616753300020440MarineMKFQIDDFIDFHVLFMTICILIAYEYIMNSSNIIIEKKINDKL
Ga0211574_1000767483300020446MarineMKLEDFIDFHVLFMTICILIAYEYIMNSSNIIVEKNLNDIS
Ga0211574_1005341433300020446MarineMKFEIENYIDFHVLFTTISIVIAYKYITHEENIIIEKKIG
Ga0211691_1015496113300020447MarineMKINNIIDYHTLFMTMCIVIAYKYITIEENIILEKKYK
Ga0211638_1010289023300020448MarineMKLEDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKINDK
Ga0211486_1002346943300020460MarineMDIEDYIDFKVLFTTMCIVIAYKYITLEENIIIERKLT
Ga0211577_1002414673300020469MarineMKFEIENYIDFHILFTTICIVIAYKYITNEQNIIIEKKFN
Ga0211585_1003170953300020477MarineMKIEDIIDYHTLFMTMCIVIAYKYITIEENIILEKKI
Ga0206682_1003367353300021185SeawaterMKLEDFIDFHVLFMTICILIAYEYIMGQSNIIVEKKLKDK
Ga0222719_1042317623300021964Estuarine WaterILLNINMKLEDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKINDKL
Ga0222719_1082832713300021964Estuarine WaterMKLEDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKIND
(restricted) Ga0233426_1004887843300022920SeawaterMKFQIDDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKLNDK
(restricted) Ga0233432_10009394123300023109SeawaterMTFKIDDYIDFHVLFMTICILIAYEYIMNGSNIIIKKNII
(restricted) Ga0233432_1001383333300023109SeawaterMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKLKDK
(restricted) Ga0233432_1026463623300023109SeawaterMKLEDFIDFHVLFMTICILIAYEYIMNETNIIIEKKINDK
(restricted) Ga0233432_1035923033300023109SeawaterMKLDDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKLNDK
Ga0208542_111287823300025818AqueousMKFQIDDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKLNDKL
Ga0208547_113822223300025828AqueousFQIDDFIDFHVFFMTICILIAYEYIMNGTNIIVEKKINDK
Ga0209630_1033480123300025892Pelagic MarineMKLEDFIDFHVLFMTICVLIGYEYIMNDTNIIIEKKINDKL
Ga0209335_1016318333300025894Pelagic MarineMKLQIEDFIDFHVLFMTICIIIAYEYIMGQSNIIVEKKLKDK
Ga0209383_117421823300027672MarineMNFKIDDYIDFHILFMTISIVIAYKYITDESNIIVEKKN
Ga0209383_118670123300027672MarineMTIDDFIDFHALFLTASAVIAYKYITKENNIIFERKKI
Ga0209710_103498433300027687MarineMNLKSFKIENYIDFDTLFMTICILIFYEYIMNHSDIIIEKKYTDK
Ga0209709_1013957423300027779MarineMTFKIENYIDFHVLFMTICILIAYEYIMNGSNIIIEKKIKDIS
Ga0209090_1006323913300027813MarineMNFKDFKIDDYIDFDTLFMTICILIFYEYIMNNSNI
Ga0209090_1045458323300027813MarineMNFKIEDYIDFHVLFMTISLIIAYKYITDGNNIIVEKKN
Ga0209090_1056516823300027813MarineMNFKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKKN
Ga0209089_1003264543300027838MarineMTFKDFQIDDYIDFDTLFMTICILIFYEYIMNHSDIIIEKKYTDK
Ga0209402_1005397643300027847MarineMKFEIENYIDFHVLFSTICIVIAYKYITNEQNIIIEKNLMIENKFN
Ga0228646_111218413300028280SeawaterMKLEDFIDFHVLFMTICILIAYEYIMNSSNIIIEKKLNDKL
Ga0308025_108665133300031143MarineYKMNFKIEDYIDFHVLFMTISIVIAYKYITGESNIIIEKK
Ga0308025_110610113300031143MarineMNFKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKKEINY
Ga0308025_112737833300031143MarineMNLKSFKIENYIDFDVLFMTICILIFLEYIMNHSDIIIEKKYTDK
Ga0308010_106090823300031510MarineMNFKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKKEINYDKKNI
Ga0307488_1000392973300031519Sackhole BrineMNFKDFKIDDYIDFDTLFMTICILIFYEYIMNNSDIIIEKKYTDK
Ga0307488_1011599933300031519Sackhole BrineMNFKDFKIDDYIDFDTLFMTICILIFYEYIMNNSNIIIEKKSTDK
Ga0307488_1029409723300031519Sackhole BrineDDYIDFDTLFMTICILIFYEYIMNNSNIIIEKKSTDK
Ga0307488_1042211333300031519Sackhole BrineMNFKDFNIDDYIDFDTLFMTICVLIFYEYIMNNSDIIIEKKYTDK
Ga0307488_1048300113300031519Sackhole BrineMNFKDLNIDDYIDFDTLFMTICVLIFYEYIMNNSDIIIEKKYTDK
Ga0307488_1085013513300031519Sackhole BrineMNFKDFNIDDYIDFDTLFMTVCILIFYEYIMNNSNIIIEKKYKDK
Ga0315316_1048317523300032011SeawaterMDIEDYIDLKVLFTTMCIVIAYKYITLEEDIIIEKKLS
Ga0315316_1147032113300032011SeawaterMKIENIIDYHTLFMTMCIVIAYKYITIEENIILEQKI
Ga0315315_1006554933300032073SeawaterMNIKIENYIDFHVLFMTICILIAYEYIMNNSNIIVEKKIKDI
Ga0310345_1003799083300032278SeawaterMDIEDYIDFKVIFTTMCIVIAYKYITLEEDIIIEKKLS
Ga0310345_1031265013300032278SeawaterMDIEDYIDFKVLFTTMCIVIAYKYITLEEDIIIERKLS


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