Metagenome / Metatranscriptome Family F092337

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092337
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	105 residues
Representative Sequence	MRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH
Number of Associated Samples	79
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	68.22 %
% of genes near scaffold ends (potentially truncated)	24.30 %
% of genes from short scaffolds (< 2000 bps)	69.16 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.80

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.467 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (11.215 % of family members)
Environment Ontology (ENVO)	Unclassified (45.794 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.75% β-sheet: 10.69% Coil/Unstructured: 46.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.80
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.80
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SCOP family	SCOP domain	Representative PDB	TM-score
c.60.1.2: Histidine acid phosphatase	d1qwoa_	1qwo	0.55862
f.44.1.1: Ammonium transporter	d1u7ga_	1u7g	0.53314
d.43.1.1: Elongation factor Ts (EF-Ts), dimerisation domain	d1tfea_	1tfe	0.53234
f.33.1.1: Metal cation-transporting ATPase, transmembrane domain	d2zxea4	2zxe	0.53171
d.126.1.0: automated matches	d4n2ka3	4n2k	0.52795

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04828	GFA	12.15
PF00106	adh_short	4.67
PF00593	TonB_dep_Rec	4.67
PF12697	Abhydrolase_6	4.67
PF00581	Rhodanese	2.80
PF00561	Abhydrolase_1	1.87
PF00849	PseudoU_synth_2	1.87
PF03707	MHYT	1.87
PF08448	PAS_4	1.87
PF00563	EAL	1.87
PF00326	Peptidase_S9	0.93
PF02308	MgtC	0.93
PF00069	Pkinase	0.93
PF12681	Glyoxalase_2	0.93
PF02779	Transket_pyr	0.93
PF02517	Rce1-like	0.93
PF07589	PEP-CTERM	0.93
PF07043	DUF1328	0.93
PF01578	Cytochrom_C_asm	0.93
PF13377	Peripla_BP_3	0.93
PF02954	HTH_8	0.93
PF07715	Plug	0.93
PF01494	FAD_binding_3	0.93
PF00440	TetR_N	0.93
PF16870	OxoGdeHyase_C	0.93
PF13561	adh_short_C2	0.93
PF00579	tRNA-synt_1b	0.93
PF00497	SBP_bac_3	0.93
PF01541	GIY-YIG	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3791	Uncharacterized conserved protein	Function unknown [S]	12.15
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.74
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	3.74
COG0564	Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific	Translation, ribosomal structure and biogenesis [J]	1.87
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	1.87
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.87
COG1187	Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605	Translation, ribosomal structure and biogenesis [J]	1.87
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	1.87
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	1.87
COG3300	MHYT domain, NO-binding membrane sensor	Signal transduction mechanisms [T]	1.87
COG1285	Magnesium uptake protein YhiD/SapB, involved in acid resistance	Inorganic ion transport and metabolism [P]	0.93
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	0.93
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.93
COG3174	Membrane component of predicted Mg2+ transport system, contains DUF4010 domain	Inorganic ion transport and metabolism [P]	0.93
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.93
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.93
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.93
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
All Organisms	root	All Organisms	49.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
cellular organisms	root	All Organisms → cellular organisms	49.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	45.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	17.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.41 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.87 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.93 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	14.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.54 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.87 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.93 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.93 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	6.54 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1.87 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.93 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	6.54 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1.87 %
Caulobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	0.93 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.93 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	6.54 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1.87 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.93 %
unclassified Caulobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter	0.93 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.47 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	6.54 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1.87 %
Acidobacterium sp. S8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	0.93 %
Caulobacter sp. UNC358MFTsu5.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. UNC358MFTsu5.1	0.93 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002705\|JGI25156J39149_1000041	All Organisms → cellular organisms → Bacteria → Proteobacteria	106358	Open in IMG/M
3300002772\|JGI25164J39214_1008287	Not Available	1041	Open in IMG/M
3300003316\|rootH1_10003398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8131	Open in IMG/M
3300003316\|rootH1_10052280	All Organisms → cellular organisms → Bacteria → Proteobacteria	1223	Open in IMG/M
3300003320\|rootH2_10060589	All Organisms → cellular organisms → Bacteria → Proteobacteria	3443	Open in IMG/M
3300003323\|rootH1_10015205	All Organisms → cellular organisms → Bacteria → Proteobacteria	1724	Open in IMG/M
3300003323\|rootH1_10043722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	9212	Open in IMG/M
3300003752\|Ga0055539_1000140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	74869	Open in IMG/M
3300003761\|Ga0055535_1000088	All Organisms → cellular organisms → Bacteria → Proteobacteria	102543	Open in IMG/M
3300003761\|Ga0055535_1033395	Not Available	515	Open in IMG/M
3300005327\|Ga0070658_10140982	Not Available	2014	Open in IMG/M
3300005327\|Ga0070658_10211173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1640	Open in IMG/M
3300005327\|Ga0070658_10535734	Not Available	1013	Open in IMG/M
3300005327\|Ga0070658_10877682	Not Available	780	Open in IMG/M
3300005330\|Ga0070690_100201745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1384	Open in IMG/M
3300005334\|Ga0068869_100133119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1913	Open in IMG/M
3300005335\|Ga0070666_10867963	Not Available	666	Open in IMG/M
3300005365\|Ga0070688_100942127	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005366\|Ga0070659_100820306	Not Available	810	Open in IMG/M
3300005455\|Ga0070663_102052615	Not Available	515	Open in IMG/M
3300005459\|Ga0068867_100470823	Not Available	1074	Open in IMG/M
3300005459\|Ga0068867_100949145	Not Available	777	Open in IMG/M
3300005519\|Ga0077119_10007753	All Organisms → cellular organisms → Bacteria → Proteobacteria	11734	Open in IMG/M
3300005519\|Ga0077119_10011973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	8708	Open in IMG/M
3300005519\|Ga0077119_10015879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	7115	Open in IMG/M
3300005519\|Ga0077119_10162779	All Organisms → cellular organisms → Bacteria → Proteobacteria	1046	Open in IMG/M
3300005519\|Ga0077119_10209593	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300005530\|Ga0070679_100927557	Not Available	814	Open in IMG/M
3300005535\|Ga0070684_100516779	Not Available	1107	Open in IMG/M
3300005539\|Ga0068853_102142492	Not Available	542	Open in IMG/M
3300005544\|Ga0070686_100199500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1433	Open in IMG/M
3300005563\|Ga0068855_100007232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	13470	Open in IMG/M
3300005563\|Ga0068855_100073918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	3960	Open in IMG/M
3300005614\|Ga0068856_101603096	Not Available	664	Open in IMG/M
3300005616\|Ga0068852_100283726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1597	Open in IMG/M
3300005616\|Ga0068852_102646829	Not Available	521	Open in IMG/M
3300005841\|Ga0068863_101592366	Not Available	662	Open in IMG/M
3300005844\|Ga0068862_102560663	Not Available	522	Open in IMG/M
3300006195\|Ga0075366_10032997	All Organisms → cellular organisms → Bacteria → Proteobacteria	3049	Open in IMG/M
3300006353\|Ga0075370_10112877	Not Available	1579	Open in IMG/M
3300006881\|Ga0068865_102015032	Not Available	524	Open in IMG/M
3300009093\|Ga0105240_10018740	All Organisms → cellular organisms → Bacteria → Proteobacteria	9274	Open in IMG/M
3300009093\|Ga0105240_10019692	All Organisms → cellular organisms → Bacteria → Proteobacteria	9014	Open in IMG/M
3300009093\|Ga0105240_11671636	Not Available	665	Open in IMG/M
3300009098\|Ga0105245_10196989	Not Available	1933	Open in IMG/M
3300009098\|Ga0105245_10893413	Not Available	930	Open in IMG/M
3300009148\|Ga0105243_10808418	Not Available	925	Open in IMG/M
3300009174\|Ga0105241_10299459	Not Available	1380	Open in IMG/M
3300009500\|Ga0116229_10213899	Not Available	1653	Open in IMG/M
3300009545\|Ga0105237_10184147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2088	Open in IMG/M
3300009686\|Ga0123338_10195520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	937	Open in IMG/M
3300009787\|Ga0116226_10004877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	11932	Open in IMG/M
3300009787\|Ga0116226_10193356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2115	Open in IMG/M
3300010152\|Ga0126318_10111108	Not Available	671	Open in IMG/M
3300010152\|Ga0126318_10676777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1268	Open in IMG/M
3300010152\|Ga0126318_10775531	All Organisms → cellular organisms → Bacteria → Proteobacteria	959	Open in IMG/M
3300010154\|Ga0127503_11019593	Not Available	559	Open in IMG/M
3300014968\|Ga0157379_11344669	Not Available	691	Open in IMG/M
3300015262\|Ga0182007_10294267	Not Available	594	Open in IMG/M
3300021405\|Ga0210387_10524092	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	1054	Open in IMG/M
3300021475\|Ga0210392_11165691	Not Available	577	Open in IMG/M
3300022561\|Ga0212090_10145333	All Organisms → cellular organisms → Bacteria → Proteobacteria	2140	Open in IMG/M
3300025226\|Ga0209674_100073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	223689	Open in IMG/M
3300025228\|Ga0209672_106135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1985	Open in IMG/M
3300025231\|Ga0207427_100590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	18213	Open in IMG/M
3300025242\|Ga0209258_100506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	37820	Open in IMG/M
3300025246\|Ga0209646_1000112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	153075	Open in IMG/M
3300025250\|Ga0209026_1032203	Not Available	775	Open in IMG/M
3300025253\|Ga0209677_100474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	22972	Open in IMG/M
3300025256\|Ga0209759_1009252	All Organisms → cellular organisms → Bacteria → Proteobacteria	2992	Open in IMG/M
3300025256\|Ga0209759_1010226	Not Available	2766	Open in IMG/M
3300025321\|Ga0207656_10684368	Not Available	525	Open in IMG/M
3300025903\|Ga0207680_10368737	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300025909\|Ga0207705_10167684	Not Available	1652	Open in IMG/M
3300025909\|Ga0207705_10225291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1425	Open in IMG/M
3300025909\|Ga0207705_11423555	Not Available	526	Open in IMG/M
3300025913\|Ga0207695_10011092	All Organisms → cellular organisms → Bacteria → Proteobacteria	10942	Open in IMG/M
3300025913\|Ga0207695_10980325	Not Available	725	Open in IMG/M
3300025921\|Ga0207652_10680388	Not Available	919	Open in IMG/M
3300025927\|Ga0207687_10202091	Not Available	1554	Open in IMG/M
3300025935\|Ga0207709_11323051	Not Available	596	Open in IMG/M
3300025944\|Ga0207661_11104330	Not Available	730	Open in IMG/M
3300025949\|Ga0207667_10351421	All Organisms → cellular organisms → Bacteria → Proteobacteria	1503	Open in IMG/M
3300025949\|Ga0207667_12226979	Not Available	505	Open in IMG/M
3300026041\|Ga0207639_11123280	Not Available	737	Open in IMG/M
3300026067\|Ga0207678_11107944	Not Available	701	Open in IMG/M
3300026088\|Ga0207641_11390890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	703	Open in IMG/M
3300026089\|Ga0207648_10974539	Not Available	794	Open in IMG/M
3300026116\|Ga0207674_10219473	All Organisms → cellular organisms → Bacteria → Proteobacteria	1849	Open in IMG/M
3300026118\|Ga0207675_100103189	All Organisms → cellular organisms → Bacteria → Proteobacteria	2687	Open in IMG/M
3300026142\|Ga0207698_10309077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1475	Open in IMG/M
3300028380\|Ga0268265_10856351	Not Available	890	Open in IMG/M
3300028573\|Ga0265334_10152279	Not Available	815	Open in IMG/M
3300028783\|Ga0302279_10000092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	119157	Open in IMG/M
3300028813\|Ga0302157_10246157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1000	Open in IMG/M
3300028813\|Ga0302157_10574752	Not Available	583	Open in IMG/M
3300029945\|Ga0311330_10496198	Not Available	984	Open in IMG/M
3300029994\|Ga0302283_1035440	Not Available	2460	Open in IMG/M
3300030520\|Ga0311372_10211924	Not Available	3215	Open in IMG/M
3300030520\|Ga0311372_10864408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1222	Open in IMG/M
3300031616\|Ga0307508_10647224	Not Available	662	Open in IMG/M
3300031716\|Ga0310813_10012977	All Organisms → cellular organisms → Bacteria → Proteobacteria	5454	Open in IMG/M
3300031730\|Ga0307516_10001176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	36553	Open in IMG/M
3300031730\|Ga0307516_10220105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. UNC358MFTsu5.1	1608	Open in IMG/M
3300031730\|Ga0307516_10782656	Not Available	615	Open in IMG/M
3300032074\|Ga0308173_10337637	Not Available	1307	Open in IMG/M
3300034170\|Ga0370487_0266760	Not Available	576	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	76.64%
Environmental	Environmental	23.36%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	76.64%
Terrestrial	Environmental → Terrestrial	17.76%
Aquatic	Environmental → Aquatic	5.61%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.23%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.43%
Roots	Host-Associated → Plants → Roots	21.50%
Soil	Environmental → Terrestrial → Soil	11.21%
Peat	Environmental → Terrestrial → Peat	6.54%
Freshwater	Environmental → Aquatic → Freshwater	5.61%
Rhizome	Host-Associated → Plants → Rhizome	4.67%
Peat Moss	Host-Associated → Plants → Peat Moss	2.80%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.15%
Epiphytes	Host-Associated → Plants → Roots → Epiphytes	9.35%
Loam	Environmental → Terrestrial → Soil → Loam	6.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.54%
Endophytes	Host-Associated → Plants → Roots → Endophytes	6.54%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	4.67%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Roots → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	2.80%
Ice	Environmental → Aquatic → Freshwater → Ice	1.87%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.15%
Unclassified	Host-Associated → Plants → Roots → Epiphytes → Unclassified	9.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.54%
Unclassified	Host-Associated → Plants → Roots → Endophytes → Unclassified	6.54%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	2.80%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.87%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	11.21%
Arabidopsis Root	Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root	9.35%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	9.35%
Arabidopsis Root	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root	6.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.67%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	4.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.67%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	3.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.74%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.74%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	3.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.80%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	2.80%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.87%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.93%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002705	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS	Host-Associated	Open in IMG/M
3300002772	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS	Host-Associated	Open in IMG/M
3300003316	Sugarcane root Sample L1	Host-Associated	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300003752	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2	Host-Associated	Open in IMG/M
3300003761	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005519	Combined assembly of arab plate scrape CL_Col (Combined Assembly)	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009686	Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - groundupSSSS metaG	Environmental	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022561	Borup_combined assembly	Environmental	Open in IMG/M
3300025226	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025228	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025231	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes)	Host-Associated	Open in IMG/M
3300025242	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025246	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes)	Host-Associated	Open in IMG/M
3300025250	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes)	Host-Associated	Open in IMG/M
3300025253	Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes)	Host-Associated	Open in IMG/M
3300025256	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028573	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG	Host-Associated	Open in IMG/M
3300028783	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029994	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_4	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300034170	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25156J39149_10000414	3300002705	Arabidopsis Root	MRTTDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH*
JGI25164J39214_10082873	3300002772	Arabidopsis Rhizosphere	VTTMRATDSAMCTLRTATFTISIRDSSDDQLEAAAAAFTSTLHRAGMTPEDALLAWRRMDEWEDLNFAADADPGTQWWRTMAIARDAVLAALRAAGLDGQRRPFVIEAADAPH*
rootH1_100033985	3300003316	Sugarcane Root And Bulk Soil	MSTLHTATFTLTIRDSSEDELEAAAAAFTCTLHRAGMTPEDALVAWQRMDEWERLNFASDADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPAERPH*
rootH1_100522802	3300003316	Sugarcane Root And Bulk Soil	MGTLHTATFTLTIRDSSEDELEAAAAAFTCTLHRAGMTPEDALVAWRRMDEWERLNFASEADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPAERPH*
rootH2_100605894	3300003320	Sugarcane Root And Bulk Soil	MRTTDSAMRSLRTATFTISIRDSSEDELEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERLNFAADADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPAARPH*
rootH1_100152053	3300003323	Sugarcane Root And Bulk Soil	TMRTTDSAMRSLRTATFTISIRDSSEDELEAAAAAFTCTLHRAGMTPEDALLAWQRMDEWERLNFAADADPGAQWWRTMAVARDAVLAALRAAGLDGQRRPFMIEPAARPH*
rootH1_1004372210	3300003323	Sugarcane Root And Bulk Soil	MRTTDSAMRSLRTATFTISIRDSSEDELEAAAAAFTCTLHRAGMTPDDALLAWRRMDEWERLNFAADADPGAQWWRTMAVARDAVLAALRAAGLDGQRRPFMIEPAARPH*
Ga0055539_100014064	3300003752	Arabidopsis Root	MSTLHTATFTLTIRDSSEDELEAAAAAFTCTLHRAGMTPEDALVAWQRMDEWERLNFASDADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFVIEPAERPH*
Ga0055535_100008826	3300003761	Arabidopsis Root	MSALQTATFTISIRGVSEDELEAAAAAFICTLHRAGLTPHDALAAWGRMDAWEQRDFAPDAEPGPAWWRTMRVARDAAMAALDAAGLDGQQRPFTIEAVSPSC*
Ga0055535_10333952	3300003761	Arabidopsis Root	MRATDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH*
Ga0070658_101409821	3300005327	Corn Rhizosphere	MRTLRTATFTISIRDSSEDELEAAAAAFTCTLHRAGLTPEDALLAWRRMDEWENLNFAADADPGAPWWRTMAIARDAVLAALRAAGLDGQRRPFLIEAATPH*
Ga0070658_102111731	3300005327	Corn Rhizosphere	LRTATFTISIRDTSEDELEAAAAAFTCTLHRYGMTPEDALGAWRRMDEWENANFAADDDPGERWWRTMAVARDAVLAALQAAGLEGQRRPFTIEPVASRH*
Ga0070658_105357342	3300005327	Corn Rhizosphere	MDMMNSLRTATFTISIRDSSEDELEAAAAAFTCTLHRYGMTPEDALGAWRRMDEWERANFAADDDPGERWWRTMAVARDAVLAALHAAGLDGQRRPFTIEPVATRH*
Ga0070658_108776822	3300005327	Corn Rhizosphere	MRTLRTATFTISIRDSSDDELEAAAAAFTSTLHRAGMTPEDALGAWRRMDEWESLNFAADADPGAPWWRTMAIARDAVLAALRAAGLDGQRRPFTIEATTPPH*
Ga0070690_1002017451	3300005330	Switchgrass Rhizosphere	LRTATFTITIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWQRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGERRPFMIEPAARPH*
Ga0068869_1001331193	3300005334	Miscanthus Rhizosphere	MSTLRTATFTITIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWQRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGERRPFMIEPAARPH*
Ga0070666_108679631	3300005335	Switchgrass Rhizosphere	RAVPGRAGLGLTGATRDAAMSTLRTATFTITIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWQRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGERRPFMIEPAARPH*
Ga0070688_1009421272	3300005365	Switchgrass Rhizosphere	MRTTDSAMRSLRTATFTISIRGSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH*
Ga0070659_1008203062	3300005366	Corn Rhizosphere	MRTTDSTMRTLRTATFTISIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGAPWWRTMAIARDAVLAALRAAGLDGQRRPFLIEAATPH*
Ga0070663_1020526151	3300005455	Corn Rhizosphere	VTTMRATDSAMCTLRTATFTISIRDSSDDQLEAAAAAFTSTLHRAGMTPEDALLAWRRMDEWEDLNFAADADPGTQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEAATPPR*
Ga0068867_1004708232	3300005459	Miscanthus Rhizosphere	MATLRTARFTISIRDTSDDQLEAAAAAFTCTLHRSGLTPDDALDAWRRMDEWERLNFASDADPGEPWWRAMAIARDAVLAALHAAGIDGQRRPFMIEPASRHH*
Ga0068867_1009491452	3300005459	Miscanthus Rhizosphere	MRTTDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEAAAPPH*
Ga0077119_100077533	3300005519	Arabidopsis Root	MATLRTARFTISIRDTSDDELEAAAAAFVCTLHRSGLTPDDALDAWRRMDEWERLNFAADADPGEPWWRAMAIARDAVLAALHAAGIDGQRRPFMIEPASRPH*
Ga0077119_100119735	3300005519	Arabidopsis Root	MATLRTATFTITIRGSSQDELEAAAAAFTRTLYCAGLTPEDALAAWRRMDEWERADFAAEADPGAPWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPVARPQ*
Ga0077119_100158799	3300005519	Arabidopsis Root	RTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH*
Ga0077119_101627792	3300005519	Arabidopsis Root	MSELRTATFTISIRGASEDELEAAAAAFTCTLHRAGLTPHDALAAWRRMDDWEERDFAPDAEPDAAWWRTMRIARDAAVGALHAAGLDGQRRPFTIEAVSRQC*
Ga0077119_102095933	3300005519	Arabidopsis Root	MGSLRTATFTITIRDSSEDELEAAAAAFICTLHRAGMTPQDALAAWRRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIESVSRPH*
Ga0070679_1009275572	3300005530	Corn Rhizosphere	MGALRTATFTISIRDASDDELEAAAAAFTCTLHRAGMTPHDALRAWHRMDEWERVDYDESAEPGADWWHTMGVARDAVLAALRSAGMDGQRRPFMIEAVSPGR*
Ga0070684_1005167791	3300005535	Corn Rhizosphere	MRTTDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIE
Ga0068853_1021424922	3300005539	Corn Rhizosphere	MRTTDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEAATPPR*
Ga0070686_1001995002	3300005544	Switchgrass Rhizosphere	GRAGLGLTGATRDAAMSTLRTATFTITIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWQRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGERRPFMIEPAARPH*
Ga0068855_10000723211	3300005563	Corn Rhizosphere	MRTLRTATFTISIRDSSEDELEAAAAAFTSTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGAPWWRTMAIARDAVLAALRAAGLDGQRRPFMIEAATPPR*
Ga0068855_1000739186	3300005563	Corn Rhizosphere	MDAMNTLRTATFTISIRDTSEDELEAAAAAFTCTLHRYGMTPEDALGAWRRMDEWENANFAADDDPGERWWRTMAVARDAVLAALQAAGLEGQRRPFTIEPVASRH*
Ga0068856_1016030961	3300005614	Corn Rhizosphere	MRTLRTATFTISIRDSSEDELEAAAAAFTSTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGAPWWRTMAIARDAVLAALRAAGLD
Ga0068852_1002837262	3300005616	Corn Rhizosphere	MRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH*
Ga0068852_1026468292	3300005616	Corn Rhizosphere	TFTISIRDSSEDELEAAAAAFTCTLHRYGMTPEDALGAWRRMDEWERANFAADDDPGERWWRTMAVARDAVLAALHAAGLDGQRRPFTIEPVATRH*
Ga0068863_1015923662	3300005841	Switchgrass Rhizosphere	MSTLRTATFTITIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWQRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPAARPH*
Ga0068862_1025606632	3300005844	Switchgrass Rhizosphere	MSTLRTATFTITIRDSSDDELEAAAAAFTSTLHRAGMTPKDAFVAWQRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGERRPFMIEP
Ga0075366_100329972	3300006195	Populus Endosphere	MRTTDSTMRTLRTATFTISIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGASWWRAMAVARDAVLAALRAAGLDGQRRPFMIEAATPPR*
Ga0075370_101128772	3300006353	Populus Endosphere	AGTGPAVTDEDVAMGTLRTATFTLTIRGSSEDELEAAAAAFTCTLHRAGMTPEDALDAWRRMDEWERANFAAESDPGAPWWRTMAVARDAVLAALRAAGLDGQRRPFMIEPAERPH*
Ga0068865_1020150321	3300006881	Miscanthus Rhizosphere	TMRTTDSTMRTLRTATFTISIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGAPWWRTMAIARDAVLAALRAAGLDGQLRPFMIEAATPPR*
Ga0105240_100187409	3300009093	Corn Rhizosphere	MRSLRTATFTISIRGSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH*
Ga0105240_100196929	3300009093	Corn Rhizosphere	MRATDSAMCTLRTATFTISIRDSSDDQLEAAAAAFTSTLHRAGMTPEDALLAWRRMDEWEDLNFAADADPGTQWWRTMAIARDAVLAALRAAGLDGQRRPFVIEAADAPH*
Ga0105240_116716361	3300009093	Corn Rhizosphere	TMRTTDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH*
Ga0105245_101969892	3300009098	Miscanthus Rhizosphere	MRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEAAAPPH*
Ga0105245_108934131	3300009098	Miscanthus Rhizosphere	MSTLRTATFTITIRDSSDDELEAAAAAFTSTLHRAGMTPEDALLAWRRMDEWEDLNFAADADPGTQWWRTMAIARDAVLAALRAAGLDGQRRPFVIEA
Ga0105243_108084181	3300009148	Miscanthus Rhizosphere	MRATDSAMCTLRTATFTISIRDSSDDELEAAAAAFTSTLHRAGMTPEDALLAWRRMDEWEDLNFAADADPGKQWWRTMAIARDAGVGVCREIQVF
Ga0105241_102994592	3300009174	Corn Rhizosphere	MRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH*
Ga0116229_102138992	3300009500	Host-Associated	MGILQTATFTISIAGADDDELEAAAAAFTCTLHRAGLAPRDALQAWRRMDDWERADFRPACDPGPRWRRTMGSARDAILAALRAAGFEGQQRPFVIQSAALPRFRDD*
Ga0105237_101841473	3300009545	Corn Rhizosphere	MRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALCAAGLDGQRRPFMIEPATRPH*
Ga0123338_101955202	3300009686	Glacier Valley	MSALRTANFTISIRDASDDEQEAAAAAFTCTLHRAGMTPHDALGARHRMDEWERVDYDTNAEPGPDWWHTMGMARDAVLAALRSAGIDGLRRPFTIEAVT*
Ga0116226_100048777	3300009787	Host-Associated	MGILQTATFTISIAGADDDELEAAAAAFTCTLHRAGLAPLDALQAWRRMDDWERAGFRPDCDPGPCWRRTMGSARDAILAALRAGGFEGQQRPFVIESAAFHRSPGG*
Ga0116226_101933562	3300009787	Host-Associated	MGILQTATFTISIAGADDDELEAAAAAFTCTLHRAGLAPRDALQAWRRMDDWERAAFRPACDPGPRWRRTMGSARDAILAALRAAGFEGQQRPFVIQSAARHRSRDG*
Ga0126318_101111082	3300010152	Soil	MRTLRTATFTISIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGAPWWRTMAIARDAVLAALRAAGLDGQRRPFMIEAATPPR*
Ga0126318_106767772	3300010152	Soil	LTTMRATDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH*
Ga0126318_107755312	3300010152	Soil	MRSLRTATFTISIRDSSEDELEAAAAAFTCTLHRAGMTPDDALLAWRRMDEWERLNFAADADPGEQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEAVTPRH*
Ga0127503_110195931	3300010154	Soil	MGILHLATFTIAISGASDDELDAAAAAFTCTLHRAALTPGDALLAWRRMDEWERLKFRPEADPGRQWRRTMGVARDAAMAALRAAGFEGQQCPFIIQSTCGRR*
Ga0157379_113446692	3300014968	Switchgrass Rhizosphere	MGTLRTATFTITIRDSSDDELEAAAAAFTSTLHRAGMTPADALVAWQRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH*
Ga0182007_102942672	3300015262	Rhizosphere	MRTTDSTMRTLRTATFTISIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGASWWRTMAVARDAVLAALRAAGLDGQRRPFMIEAATPPR*
Ga0210387_105240922	3300021405	Soil	MGILHTATFTISIRGSSDDELEAAAAAFTRTLHRAGLTPPDALSAWQRMDEWERVNFSEEADPGPQWWRTMGVARDAVIAALRAAGVEGERRPFVIQPGVRHH
Ga0210392_111656912	3300021475	Soil	MGTLHTATFTISIRGASDDELEAAAAAFTCTLHRVGLTPADALRAWRRMDEWQRVKFAADADPGRAWHHTMGHARDALLAALRAPGVEGEERPFAIQSSCGRH
Ga0212090_101453332	3300022561	Glacier Valley	MSALRTATFTISIRDASDDEQEAADAAFTCTLHRAGMTPHDALGARHRMDEWERVDYDTNAEPGPDWWHTMGMARDAVLAALRSAGIDGLRRPFTIEAVT
Ga0209674_100073210	3300025226	Arabidopsis Root	MSTLHTATFTLTIRDSSEDELEAAAAAFTCTLHRAGMTPEDALVAWQRMDEWERLNFASDADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFVIEPAERPH
Ga0209672_1061352	3300025228	Arabidopsis Root	MSALQTATFTISIRGVSEDELEAAAAAFICTLHRAGLTPHDALAAWGRMDAWEQRDFAPDAEPGPAWWRTMRVARDAAMAALDAAGLDGQQRPFTIEAVSPSC
Ga0207427_1005904	3300025231	Arabidopsis Rhizosphere	MRATDSAMCTLRTATFTISIRDSSDDQLEAAAAAFTSTLHRAGMTPEDALLAWRRMDEWEDLNFAADADPGTQWWRTMAIARDAVLAALRAAGLDGQRRPFVIEAADAPH
Ga0209258_1005069	3300025242	Arabidopsis Root	MRATDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH
Ga0209646_10001124	3300025246	Arabidopsis Root	MRTTDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH
Ga0209026_10322031	3300025250	Arabidopsis Root	ARFTISIRDTSDDELEAAAAAFVCTLHRSGLTPDDALDAWRRMDEWERLNFAADADPGEPWWRAMAIARDAVLAALHAAGIDGQRRPFMIEPASRPH
Ga0209677_10047415	3300025253	Arabidopsis Root	MDMMNSLRTATFTISIRDSSEDELEAAAAAFTCTLHRYGMTPEDALGAWRRMDEWERANFAADDDPGERWWRTMAVARDAVLAALHAAGLDGQRRPFTIEPVATRH
Ga0209759_10092526	3300025256	Arabidopsis Root	MATLRTARFTISIRDTSDDELEAAAAAFVCTLHRSGLTPDDALDAWRRMDEWERLNFAADADPGEPWWRAMAIARDAVLAALHAAGIDGQRRPFMIEPASRPH
Ga0209759_10102262	3300025256	Arabidopsis Root	MATLRTATFTITIRGSSQDELEAAAAAFTRTLYCAGLTPEDALAAWRRMDEWERADFAAEADPGAPWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPVARPQ
Ga0207656_106843681	3300025321	Corn Rhizosphere	MRTLRTATFTISIRDSSEDELEAAAAAFTSTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGAPWWRTMAIARDAVLAALRAAGLDGQRRPFMIEAATPPR
Ga0207680_103687372	3300025903	Switchgrass Rhizosphere	MSTLRTATFTITIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWQRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGERRPFMIEPAARPH
Ga0207705_101676841	3300025909	Corn Rhizosphere	MRTLRTATFTISIRDSSEDELEAAAAAFTCTLHRAGLTPEDALLAWRRMDEWENLNFAADADPGAPWWRTMAIARDAVLAALRAAGLDGQRRPFLIEAATPH
Ga0207705_102252911	3300025909	Corn Rhizosphere	SERADMDAMNTLRTATFTISIRDTSEDELEAAAAAFTCTLHRYGMTPEDALGAWRRMDEWENANFAADDDPGERWWRTMAVARDAVLAALQAAGLEGQRRPFTIEPVASRH
Ga0207705_114235551	3300025909	Corn Rhizosphere	APRSRTDPAHGAAMDMMNSLRTATFTISIRDSSEDELEAAAAAFTCTLHRYGMTPEDALGAWRRMDEWERANFAADDDPGERWWRTMAVARDAVLAALHAAGLDGQRRPFTIEPVATRH
Ga0207695_100110924	3300025913	Corn Rhizosphere	MRTTDSAMRSLRTATFTISIRGSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH
Ga0207695_109803251	3300025913	Corn Rhizosphere	AVVQFARPRAVPRRPGRGLTTMRTTDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH
Ga0207652_106803881	3300025921	Corn Rhizosphere	MGALRTATFTISIRDASDDELEAAAAAFTCTLHRAGMTPHDALRAWHRMDEWERVDYDESAEPGADWWHTMGVARDAVLAALRSAGMDGQRRPFMIEAVSPGR
Ga0207687_102020912	3300025927	Miscanthus Rhizosphere	MRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEAAAPPH
Ga0207709_113230512	3300025935	Miscanthus Rhizosphere	VTTMRATDSAMCTLRTATFTISIRDSSDDELEAAAAAFTSTLHRAGMTPEDALLAWRRMDEWEDLNFAADADPGKQWWRTMAIARDAGVGVCREIQV
Ga0207661_111043301	3300025944	Corn Rhizosphere	MRTTDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGPQWWRTMAIARDAVLAALRAAG
Ga0207667_103514212	3300025949	Corn Rhizosphere	MDAMNTLRTATFTISIRDTSEDELEAAAAAFTCTLHRYGMTPEDALGAWRRMDEWENANFAADDDPGERWWRTMAVARDAVLAALQAAGLEGQRRPFTIEPVASRH
Ga0207667_122269792	3300025949	Corn Rhizosphere	MRTTDSAMRSLRTATFTISIRGSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADLGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH
Ga0207639_111232801	3300026041	Corn Rhizosphere	MRTTDSTMRTLRTATFTISIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGAPWWRTMAIARDAVLAALRAAGLDGQRRPFMIEAATPPR
Ga0207678_111079441	3300026067	Corn Rhizosphere	MRSLRTATFTISIRDSSDDQLEAAAAAFTSTLHRAGMTPEDALLAWRRMDEWEDLNFAADADPGTQWWRTMAIARDAVLAALRAAGLDGQRRPFVIEAADAPH
Ga0207641_113908901	3300026088	Switchgrass Rhizosphere	AVVQLARSRAVPGRAGLGLTGARREAAMSTLRTATFTITIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWQRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPAARPH
Ga0207648_109745392	3300026089	Miscanthus Rhizosphere	MATLRTARFTISIRDTSDDQLEAAAAAFTCTLHRSGLTPDDALDAWRRMDEWERLNFASDADPGEPWWRAMAIARDAVLAALHAAGIDGQRRPFMIEPASRHH
Ga0207674_102194731	3300026116	Corn Rhizosphere	MRTTDSAMRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERLNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFLIEPATRPH
Ga0207675_1001031891	3300026118	Switchgrass Rhizosphere	MRTTDSTMRSLRTATFTISIRDSSEDELEAAAAAFTCTLHRAGMTPEDALLAWQRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGERRPFMIEPAARPH
Ga0207698_103090773	3300026142	Corn Rhizosphere	MRSLRTATFTISIRDSSEDQLEAAAAAFTCTLHRAGMTPEDALLAWRRMDEWERRNFAADADPGAQWWRTMAIARDAVLAALRAAGLDGQRRPFMIEPATRPH
Ga0268265_108563512	3300028380	Switchgrass Rhizosphere	MSTLRTATFTITIRDSSDDELEAAAAAFTSTLHRAGMTPKDAFVAWQRMDEWERQNFAAEADPGAQWWRTMAIARDAVLAALRAAGLDGERRPFMIEPAARPH
Ga0265334_101522791	3300028573	Rhizosphere	MGVLHTATFTLSIPDASDDQLDAAAAAFTCTLHRSGLTPAGALAAWRLMDEWERLEFAPTADPGPRWRCTMGIARDAAMAALRAAGLEGQQRPFVIQPACPRR
Ga0302279_1000009280	3300028783	Bog	MGILHTATFTISIRDLSEDELEAAAAAFTCTLHRAGLEPGDAFGAWRRMDEWDSLHFSAEADPGPRWRATMGIARNAVLAALRAAGLEGQHRPFVIQPVANPH
Ga0302157_102461572	3300028813	Bog	MGILQTATFTISIAGADDDELEAAAAAFTCTLHRAGLAPRDALQAWRRMDEWERAGFRPDCDPGPRWRRTMGSARDAILAALRAAGFEGQQRPFVIESAALHRSPDR
Ga0302157_105747521	3300028813	Bog	MSALRTATFTISIRGASEDELEAAAAAFIRTLHRAGSTPHEALAAWRRMDEWEEHDFAPDVEPGPAWWRTMGLAREAAQAALHAAGIDDERRPFSIEAVPRSCE
Ga0311330_104961982	3300029945	Bog	MGALRTATFTISIRGASEDELEAAAAAFIRTLHRADLTPHDALAAWQRMDEWEERDFAPEVEPGPAWWRSMRVARDAAMAALHAAGLDGQQRPFSIEAVSRTC
Ga0302283_10354404	3300029994	Fen	MGILHTATFTISIRDLSEDELEAAAAAFTCTLHRAGLEPGDAFGAWRRMDEWDSLHFSAEADPGPRWRATMGIARNAVLAALRAAGLEG
Ga0311372_102119241	3300030520	Palsa	MGILHTATFTISIRDSSDDELEAAAAAFTCTLHRAGLTPPDALSAWQRMDEWERQQFSEETDPGPQWWRTMGVAREAVLAALRAAGVEGERRPFVIQAGVRQH
Ga0311372_108644082	3300030520	Palsa	MGILHTATFTISIRDSSDDELEAAAAAFTCTLHRAGLTPADALSAWQQMDEWERRQFSEEMDPGPQWWRTMGVAREAVRAALRAAGAEGERRPFVIQPGMRQH
Ga0307508_106472241	3300031616	Ectomycorrhiza	GASDDELEAAAAAFTCALHRVGLTPADALRAWQRMDQWQRVRFAAEADPGAAWRRTMGHARGALLAALRAPGFEGEDRPFMIQSSCSRH
Ga0310813_100129772	3300031716	Soil	MRTTDSTMRTLRTATFTISIRDSSDDELEAAAAAFTSTLHRAGMTPEDALVAWRRMDEWENLNFAADADPGASWWRAMAVARDAVLAALRAAGLDGQRRPFMIEAATPPR
Ga0307516_1000117614	3300031730	Ectomycorrhiza	MDILHTATFTIAIRGASDDELEAAAAAFTCTLHRAALTPDDALVAWHRMDEWERLKFTPERDPGPHWRRTMGVARDAIVAALCAAGFEGQQRPFIIQSGCGRH
Ga0307516_102201053	3300031730	Ectomycorrhiza	MSILHTATFMISIRGASDDELEAAAAAFTCTLHRAALTPIDALLAWHRMDEWERLKFAPASDPGPHWRRTMSVARDAILAALRAAGFEGEQRPFIIQSGCGRH
Ga0307516_107826562	3300031730	Ectomycorrhiza	MAILHTATFTIAIRDASDDEIEAAAAAFTCTLHRAGLTPNDALSAWDRMDDWQRAEFAPRHDPGPDWRHTMAVARDAVLAALRACGLEGQRHPFVIQPGARPR
Ga0308173_103376372	3300032074	Soil	MGTLRTATFTISIRDTSDDELEAAAAAFTCTLHRAGMTPDDALLAWRRMDEWERDNFASEADPGERWWRTMAVAREAVLSALHAAGIDGHRRPFMIEPVSRPH
Ga0370487_0266760_32_343	3300034170	Untreated Peat Soil	MSALRTATFTISIRGASEDELEAASAAFIRTLHRAGLTPHDALGAWRRMDEWEERDFAPDAEPGPAWWRTMRVAREAAVDALHAAGFDDQQRPFTIEPVARPC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092337

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences