Metagenome Family F092332

Basic Information
Family ID	F092332
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	88 residues
Representative Sequence	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETAKYNCSD
Number of Associated Samples	87
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	42.99 %
% of genes near scaffold ends (potentially truncated)	34.58 %
% of genes from short scaffolds (< 2000 bps)	89.72 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (69.159 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (14.019 % of family members)
Environment Ontology (ENVO)	Unclassified (40.187 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.963 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.63% β-sheet: 12.90% Coil/Unstructured: 49.46%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00072	Response_reg	10.28
PF00293	NUDIX	5.61
PF13030	DUF3891	0.93
PF07883	Cupin_2	0.93
PF12200	DUF3597	0.93
PF01977	UbiD	0.93
PF02586	SRAP	0.93
PF01710	HTH_Tnp_IS630	0.93
PF04231	Endonuclease_1	0.93
PF02826	2-Hacid_dh_C	0.93
PF02735	Ku	0.93
PF02779	Transket_pyr	0.93
PF00589	Phage_integrase	0.93
PF04679	DNA_ligase_A_C	0.93
PF01814	Hemerythrin	0.93
PF02518	HATPase_c	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.93
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.93
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.93
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.93
COG2356	Endonuclease I	Replication, recombination and repair [L]	0.93
COG3415	CRISPR-associated protein Csa3, CARF domain	Defense mechanisms [V]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
All Organisms	root	All Organisms	30.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
cellular organisms	root	All Organisms → cellular organisms	30.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.08 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	11.21 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	11.21 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	11.21 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.16 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	11.21 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100337954	All Organisms → cellular organisms → Bacteria → Proteobacteria	3651	Open in IMG/M
3300000789\|JGI1027J11758_13041818	Not Available	650	Open in IMG/M
3300002128\|JGI24036J26619_10119867	Not Available	544	Open in IMG/M
3300004479\|Ga0062595_102491877	Not Available	516	Open in IMG/M
3300005295\|Ga0065707_10024627	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1303	Open in IMG/M
3300005347\|Ga0070668_101097905	Not Available	718	Open in IMG/M
3300005354\|Ga0070675_101975111	Not Available	538	Open in IMG/M
3300005356\|Ga0070674_100406118	Not Available	1114	Open in IMG/M
3300005367\|Ga0070667_101615614	Not Available	609	Open in IMG/M
3300005439\|Ga0070711_101887764	Not Available	525	Open in IMG/M
3300005441\|Ga0070700_101325581	Not Available	606	Open in IMG/M
3300005843\|Ga0068860_100364718	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300006058\|Ga0075432_10574139	Not Available	512	Open in IMG/M
3300006196\|Ga0075422_10018224	All Organisms → cellular organisms → Bacteria	2367	Open in IMG/M
3300006844\|Ga0075428_100552896	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1230	Open in IMG/M
3300006846\|Ga0075430_100840291	Not Available	757	Open in IMG/M
3300006847\|Ga0075431_101533757	Not Available	624	Open in IMG/M
3300006852\|Ga0075433_10682911	Not Available	900	Open in IMG/M
3300006854\|Ga0075425_100295317	All Organisms → cellular organisms → Bacteria	1865	Open in IMG/M
3300006854\|Ga0075425_100488528	Not Available	1418	Open in IMG/M
3300006854\|Ga0075425_102520484	Not Available	569	Open in IMG/M
3300006880\|Ga0075429_100500562	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1065	Open in IMG/M
3300006881\|Ga0068865_100865969	Not Available	784	Open in IMG/M
3300009098\|Ga0105245_12241791	Not Available	600	Open in IMG/M
3300009098\|Ga0105245_13197297	Not Available	508	Open in IMG/M
3300009137\|Ga0066709_100406001	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1891	Open in IMG/M
3300009147\|Ga0114129_10413073	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300009156\|Ga0111538_13036828	Not Available	586	Open in IMG/M
3300009156\|Ga0111538_13065853	Not Available	583	Open in IMG/M
3300009553\|Ga0105249_12460887	Not Available	593	Open in IMG/M
3300010400\|Ga0134122_10201924	All Organisms → cellular organisms → Bacteria	1649	Open in IMG/M
3300010400\|Ga0134122_11189040	Not Available	762	Open in IMG/M
3300011003\|Ga0138514_100048652	Not Available	851	Open in IMG/M
3300011444\|Ga0137463_1087323	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300011444\|Ga0137463_1095757	Not Available	1116	Open in IMG/M
3300012200\|Ga0137382_10571133	Not Available	806	Open in IMG/M
3300012203\|Ga0137399_10353998	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300012203\|Ga0137399_10691247	Not Available	859	Open in IMG/M
3300012207\|Ga0137381_11212233	Not Available	648	Open in IMG/M
3300012208\|Ga0137376_10291820	Not Available	1415	Open in IMG/M
3300012285\|Ga0137370_10166251	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300012360\|Ga0137375_10486361	Not Available	1054	Open in IMG/M
3300012473\|Ga0157340_1003888	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300012479\|Ga0157348_1001379	Not Available	1091	Open in IMG/M
3300012480\|Ga0157346_1010696	Not Available	670	Open in IMG/M
3300012486\|Ga0157331_1009326	Not Available	697	Open in IMG/M
3300012492\|Ga0157335_1027141	Not Available	580	Open in IMG/M
3300012495\|Ga0157323_1018001	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	643	Open in IMG/M
3300012505\|Ga0157339_1008586	Not Available	885	Open in IMG/M
3300012507\|Ga0157342_1040284	Not Available	623	Open in IMG/M
3300012508\|Ga0157315_1038258	Not Available	596	Open in IMG/M
3300012515\|Ga0157338_1037155	Not Available	648	Open in IMG/M
3300012517\|Ga0157354_1023794	Not Available	732	Open in IMG/M
3300012519\|Ga0157352_1020722	Not Available	794	Open in IMG/M
3300012582\|Ga0137358_10977410	Not Available	549	Open in IMG/M
3300012685\|Ga0137397_10447908	Not Available	962	Open in IMG/M
3300012922\|Ga0137394_10846295	Not Available	765	Open in IMG/M
3300012924\|Ga0137413_11013466	Not Available	652	Open in IMG/M
3300012925\|Ga0137419_11801370	Not Available	524	Open in IMG/M
3300012961\|Ga0164302_10196139	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300013306\|Ga0163162_10979239	Not Available	956	Open in IMG/M
3300015241\|Ga0137418_10088482	All Organisms → cellular organisms → Bacteria	2800	Open in IMG/M
3300015242\|Ga0137412_11041807	Not Available	583	Open in IMG/M
3300015264\|Ga0137403_11060809	Not Available	657	Open in IMG/M
3300015371\|Ga0132258_10198133	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4870	Open in IMG/M
3300015371\|Ga0132258_10207690	All Organisms → cellular organisms → Bacteria	4754	Open in IMG/M
3300015371\|Ga0132258_13331617	Not Available	1105	Open in IMG/M
3300015372\|Ga0132256_101003922	Not Available	950	Open in IMG/M
3300015372\|Ga0132256_103130082	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	556	Open in IMG/M
3300015372\|Ga0132256_103672989	Not Available	516	Open in IMG/M
3300015373\|Ga0132257_101113018	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300015373\|Ga0132257_101792919	Not Available	788	Open in IMG/M
3300015374\|Ga0132255_100288408	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2359	Open in IMG/M
3300015374\|Ga0132255_103262411	Not Available	691	Open in IMG/M
3300015374\|Ga0132255_104576571	Not Available	586	Open in IMG/M
3300017792\|Ga0163161_10263069	Not Available	1348	Open in IMG/M
3300018051\|Ga0184620_10077107	Not Available	992	Open in IMG/M
3300018067\|Ga0184611_1219296	Not Available	676	Open in IMG/M
3300018072\|Ga0184635_10038801	All Organisms → cellular organisms → Bacteria → Proteobacteria	1813	Open in IMG/M
3300018072\|Ga0184635_10106764	Not Available	1109	Open in IMG/M
3300018073\|Ga0184624_10008739	All Organisms → cellular organisms → Bacteria	3441	Open in IMG/M
3300018073\|Ga0184624_10078063	Not Available	1389	Open in IMG/M
3300018081\|Ga0184625_10029457	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2675	Open in IMG/M
3300018081\|Ga0184625_10161154	Not Available	1173	Open in IMG/M
3300018082\|Ga0184639_10186755	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1100	Open in IMG/M
3300018469\|Ga0190270_10554860	Not Available	1109	Open in IMG/M
3300019883\|Ga0193725_1089517	Not Available	740	Open in IMG/M
3300019886\|Ga0193727_1139522	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	672	Open in IMG/M
3300021344\|Ga0193719_10408316	Not Available	558	Open in IMG/M
3300022756\|Ga0222622_10197977	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1331	Open in IMG/M
3300025315\|Ga0207697_10137694	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300025916\|Ga0207663_11553745	Not Available	533	Open in IMG/M
3300025923\|Ga0207681_10871201	Not Available	754	Open in IMG/M
3300025930\|Ga0207701_10024302	All Organisms → cellular organisms → Bacteria	5777	Open in IMG/M
3300025935\|Ga0207709_10715548	Not Available	802	Open in IMG/M
3300025937\|Ga0207669_10592963	Not Available	900	Open in IMG/M
3300025938\|Ga0207704_11104846	Not Available	674	Open in IMG/M
3300025961\|Ga0207712_10914591	Not Available	776	Open in IMG/M
3300027880\|Ga0209481_10186682	Not Available	1033	Open in IMG/M
3300027907\|Ga0207428_10086809	Not Available	2435	Open in IMG/M
3300031720\|Ga0307469_10198150	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1565	Open in IMG/M
3300031720\|Ga0307469_10465202	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300031720\|Ga0307469_11683853	Not Available	611	Open in IMG/M
3300031740\|Ga0307468_100030647	All Organisms → cellular organisms → Bacteria	2558	Open in IMG/M
3300031740\|Ga0307468_101084998	Not Available	712	Open in IMG/M
3300032180\|Ga0307471_100670772	Not Available	1200	Open in IMG/M
3300032205\|Ga0307472_102784795	Not Available	500	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.34%
Host-Associated	Host-Associated	47.66%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	47.66%
Terrestrial	Environmental → Terrestrial	41.12%
Aquatic	Environmental → Aquatic	11.21%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.10%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.56%
Sediment	Environmental → Aquatic → Sediment	11.21%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.21%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.48%
Loam	Environmental → Terrestrial → Soil → Loam	3.74%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.02%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.41%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.48%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	7.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.61%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	2.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.80%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012473	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610	Host-Associated	Open in IMG/M
3300012479	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610	Environmental	Open in IMG/M
3300012480	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610	Host-Associated	Open in IMG/M
3300012486	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510	Environmental	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012495	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610	Host-Associated	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1003379541	3300000559	Soil	MAQRTRSIDISVREARHKVYNELCTAYRRSGQDADFGLRADDVIGDLAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
JGI1027J11758_130418181	3300000789	Soil	VREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELTIPRNVFTEALDGFADVKGELIVEMFERNGERY
JGI24036J26619_101198672	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	MAQRRSNEISVLEARHKIFNQLCIAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVRGELIVEMFERKGERYIRLGETAKYNCSD*
Ga0062595_1024918771	3300004479	Soil	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERNGERYI
Ga0065707_100246273	3300005295	Switchgrass Rhizosphere	RSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0070668_1010979051	3300005347	Switchgrass Rhizosphere	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0070675_1019751111	3300005354	Miscanthus Rhizosphere	VREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0070674_1004061181	3300005356	Miscanthus Rhizosphere	MAQRRSNEISVLEARHKIFNQLCIAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0070667_1016156142	3300005367	Switchgrass Rhizosphere	MLMAQSSTEISLLEARHKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADIRGELIVEMFERNGERYIRLGETAKYNCSDPPPTLPDLVMREP*
Ga0070711_1018877641	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPNFGLLAYDVMVELAIPRNVFAEALDGFVDVNGELIVEMVERDGERYIRLGETAKYNCSD*
Ga0070700_1013255811	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	IFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0068860_1003647181	3300005843	Switchgrass Rhizosphere	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPNFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0075432_105741391	3300006058	Populus Rhizosphere	MAQRTRSIDISVREARHKVYNELCTAYRRSGQDADFGLRADDVIGDLAIPRNVFAEALDGFADVRGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0075422_100182243	3300006196	Populus Rhizosphere	MGQSRSTEIPVLEARHKIFNRLCSAYRRAGQDPDFGLRGYDVMVELAIPRNVFAEALDGFADARGELIVVMFERDGERYIRLGETAKYNCSD*
Ga0075428_1005528962	3300006844	Populus Rhizosphere	MGQSRSTEISLLEARHKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0075430_1008402912	3300006846	Populus Rhizosphere	MGQSRSTEIPVLEARHKIFNRLCSAYRRAGQDPDFGLRGYDVMVELAIPRNVFAEALDGFADARGELIVVMFERDGERYIRLG
Ga0075431_1015337571	3300006847	Populus Rhizosphere	MAQRTRSIDISVREARHKVYNELCTAYRRSGQDADFGLRADDVIGDLAIPQNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0075433_106829111	3300006852	Populus Rhizosphere	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSG*
Ga0075425_1002953173	3300006854	Populus Rhizosphere	MAQRTRPIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0075425_1004885281	3300006854	Populus Rhizosphere	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERNGERY
Ga0075425_1025204841	3300006854	Populus Rhizosphere	HKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0075429_1005005621	3300006880	Populus Rhizosphere	LCTAYRRSGQDADFGLRADDVIGDLAIPQNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0068865_1008659692	3300006881	Miscanthus Rhizosphere	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0105245_122417911	3300009098	Miscanthus Rhizosphere	MAQSRSTEISLLEARHKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADIRGELIVEMFERN
Ga0105245_131972971	3300009098	Miscanthus Rhizosphere	MAQRTRPIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETAKYNCSD
Ga0066709_1004060011	3300009137	Grasslands Soil	VREARHKIFNKLCTAYRRSGQDPNFGLRADDVIGELDIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGGTAKYNCSD*
Ga0114129_104130731	3300009147	Populus Rhizosphere	KLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0111538_130368282	3300009156	Populus Rhizosphere	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERNGERYIRLGET
Ga0111538_130658531	3300009156	Populus Rhizosphere	MGQSRSTEISTLEARRKIFNKLRSAYRRSGQDPNFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFQRKGERYIRLGQTAKYNCSDWSAPL
Ga0105249_124608872	3300009553	Switchgrass Rhizosphere	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPRNVFAEALDGFVDVNGELIVEMFERDGERYIRLGETAKYNCSD*
Ga0134122_102019243	3300010400	Terrestrial Soil	AQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0134122_111890401	3300010400	Terrestrial Soil	MAQSRSTEISLLVARHKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADIRGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0138514_1000486521	3300011003	Soil	MAQRTRPIEISVREARHKIFNKLCSAYRRSGQDPNFGLRADDVIKELDMPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCTD*
Ga0137463_10873231	3300011444	Soil	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERY
Ga0137463_10957571	3300011444	Soil	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFALRAYDVMVELAIPLSLFAEALDGFVDVNGERIVEMFERKGERYIRLGETAKYNCSD*
Ga0137382_105711331	3300012200	Vadose Zone Soil	VNGEEAINGISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLNLFAEALDGFVDVRGELIVAMFERNGERYIRLGETAKYNCGD*
Ga0137399_103539982	3300012203	Vadose Zone Soil	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVRGELIVEMFERNGERYIRLGETAKYNCRD*
Ga0137399_106912471	3300012203	Vadose Zone Soil	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELDIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0137381_112122331	3300012207	Vadose Zone Soil	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDSDFGLRADDVIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0137376_102918201	3300012208	Vadose Zone Soil	MAQRKRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0137370_101662511	3300012285	Vadose Zone Soil	MAQRKRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDKIRELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0137375_104863611	3300012360	Vadose Zone Soil	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDVIEELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0157340_10038881	3300012473	Arabidopsis Rhizosphere	GQDPDFGLRADDIIGELAIPQNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0157348_10013791	3300012479	Unplanted Soil	MAQSRSTEISLLEARHKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADIRGELIVEMFERNGERYIRLGETAKYNCGD*
Ga0157346_10106961	3300012480	Arabidopsis Rhizosphere	MAQRTRSIDISVREARHKIFNKLCGAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0157331_10093261	3300012486	Soil	MAQSRSTEISLLEARHKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFERNGERYIRLGET
Ga0157335_10271411	3300012492	Arabidopsis Rhizosphere	LCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGEFIVEMFERNGERYIRLGETSKYNCSD*
Ga0157323_10180011	3300012495	Arabidopsis Rhizosphere	GQDANFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0157339_10085861	3300012505	Arabidopsis Rhizosphere	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGEFIVEMFERNGERYIRLGETSKYNCSD*
Ga0157342_10402841	3300012507	Arabidopsis Rhizosphere	IFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0157315_10382582	3300012508	Arabidopsis Rhizosphere	MTQSQSTEISLLEARRKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFERNGER*
Ga0157338_10371551	3300012515	Arabidopsis Rhizosphere	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELTIPRNVFTEALDGFADVKGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0157354_10237942	3300012517	Unplanted Soil	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVRGELIVVMFERNGERYIRLGETAKYNCGD*
Ga0157352_10207221	3300012519	Unplanted Soil	MAQSRSTEISLLEARHKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0137358_109774101	3300012582	Vadose Zone Soil	MAQRTRSIDISVREARHKIFNKLCSAYRHSGQDPDFGLRADDIIGELDIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0137397_104479082	3300012685	Vadose Zone Soil	MAQRAINEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLNLFAEALDGFADVNGELIVEMFERKGERYIRLGETGKYNCRD*
Ga0137394_108462951	3300012922	Vadose Zone Soil	MAQRAINEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLNLFAEALDGFADVRGELIVEMFERNGERYIRLGETAKYNCGD*
Ga0137413_110134662	3300012924	Vadose Zone Soil	VNGEEAINGISVLEARHKIFNQLCTAYRCSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFVDVNGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0137419_118013701	3300012925	Vadose Zone Soil	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELTIPLSLFAEALDGFVDVNGELIVEMFERNGERY
Ga0164302_101961393	3300012961	Soil	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERKGERYIRLGETAKYNCSD*
Ga0163162_109792391	3300013306	Switchgrass Rhizosphere	AQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0137418_100884822	3300015241	Vadose Zone Soil	MAQRRSIEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELTIPLSLFAEALDGFVDVNGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0137412_110418071	3300015242	Vadose Zone Soil	VNGEEAINGISVLEARHKIFNQLCTAYRCSAQDPDFGLRAYDVMVELTIPLSLFAEALDGFVDVNGELIVEMFERKGERYIRLGETGKYNCRD*
Ga0137403_110608091	3300015264	Vadose Zone Soil	MGQSPSTEISILEARRKIFNKLCSAYPRSGQDPNFGLLAYDVMVELAIPRNVFAEAVDGFADVRGELIVEMFERNGREIYGTRRNSEV*
Ga0132258_101981338	3300015371	Arabidopsis Rhizosphere	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDLGLRADDIIGELTIPRNVFGEALDGFADVKGELIVKMFERNGERYIRLGETSKYNCSD*
Ga0132258_102076904	3300015371	Arabidopsis Rhizosphere	LDLIQSRSIEISVLEARHKIFNKLCSSYRRSGQDPDFGLLGYDVMVELDIPRNVFAEALDGFADVGGELIVVMFARNGERYIRLGETAKLR*
Ga0132258_133316171	3300015371	Arabidopsis Rhizosphere	AQDPDFGLRAYDVMVELAMPLSLFAEALDGFVDVNGEFIVEMFERNGERYIRLGETAKYNCGD*
Ga0132256_1010039221	3300015372	Arabidopsis Rhizosphere	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGEFIVEMFERNGERYIRLGETAKYNCGD*
Ga0132256_1031300821	3300015372	Arabidopsis Rhizosphere	MAQSRSTEISLLEARHKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADIRGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0132256_1036729891	3300015372	Arabidopsis Rhizosphere	FNKLCSSYRRSGQDPDFGLLGYDVMVELDIPRNVFAEALDGFADVGGELIVVMFARNGERYIRLGETAKLR*
Ga0132257_1011130181	3300015373	Arabidopsis Rhizosphere	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPQNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0132257_1017929192	3300015373	Arabidopsis Rhizosphere	MGQSRSIEISVLEARHTIFNKLCSAYRRSGQDPNFGLLAYDVMVELAIPRNVFAEALDGFADIRGELIVEMFERNGERYIRLGETAKYNCSD*
Ga0132255_1002884085	3300015374	Arabidopsis Rhizosphere	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDLGLRADDIIGELTIPRNVFGEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD*
Ga0132255_1032624112	3300015374	Arabidopsis Rhizosphere	HKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGEFIVEMFERNGERYIRLGETSKYNCSD*
Ga0132255_1045765711	3300015374	Arabidopsis Rhizosphere	MAQRLSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAMPLSLFAEALDGFVDVNGEFIVEMFERNGERYIRLGETAKYNCGD*
Ga0163161_102630691	3300017792	Switchgrass Rhizosphere	MRFQFLKRGTRFFNQLCTAYRRAGQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVRGELIVEMFERKGERYIRLGETAKYNCSD
Ga0184620_100771073	3300018051	Groundwater Sediment	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVRGELVVEMFERNGERYIRLGETAKYNCSD
Ga0184611_12192962	3300018067	Groundwater Sediment	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERKGERYIRLGETAKYNCSD
Ga0184635_100388011	3300018072	Groundwater Sediment	NDISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLNLFAEALDGFADVNGELIVEMFERKGERYIRLGETAKYNCSD
Ga0184635_101067641	3300018072	Groundwater Sediment	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFDLRAYDVMVELAIPLSLFAEALDGFADVNGGLIVEMFERNGER
Ga0184624_100087397	3300018073	Groundwater Sediment	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFDLRAYDVMVELAIPLSLFAEALDGFADVNGGLIVEMFERNGERYIRLG
Ga0184624_100780634	3300018073	Groundwater Sediment	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRYYDVMVELAIPLNLFAEALDGFADVNGELIVEMFERKGERYIRLGETAKYNCSD
Ga0184625_100294574	3300018081	Groundwater Sediment	VDGAEAINEISVLEARRKIFNQLCTAYRRSAQDPDFGLRYYDVMVELAIPLNLFAEALDGFADVNGELIVEMFERKGERYIRLGETAKYNCSD
Ga0184625_101611542	3300018081	Groundwater Sediment	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGGLIVEMFERNGERYIRLGETAKYNCSD
Ga0184639_101867552	3300018082	Groundwater Sediment	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFDLRAYDVMVELAIPLSLFAEALDGFADVNGGLIVEMFERNGERYIRLGETSKYNCSD
Ga0190270_105548602	3300018469	Soil	MAQRRSIEISVLEARHKIFNNLCSAYRRSRQDPNFGLRAYDVMIELAIPRSVFAEALDGFADVNGELIVEMFERNGERYIRLGETAKYNCSD
Ga0193725_10895171	3300019883	Soil	DISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD
Ga0193727_11395222	3300019886	Soil	SIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD
Ga0193719_104083161	3300021344	Soil	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD
Ga0222622_101979773	3300022756	Groundwater Sediment	LCTAYRRSAQDPDFGLRASDVMVELAIPLNLFAEALDGFADVNGELIVEMFERNGERYIRLGETAKYNCSD
Ga0207697_101376941	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	ARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD
Ga0207663_115537451	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MAQRLSNEISVLEARHKIFNQLCTAYRRSAQDPNFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFERNGERYIRLGETAKYNCSD
Ga0207681_108712012	3300025923	Switchgrass Rhizosphere	MAQRTRPIDISVREARHTIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETAKYNCSD
Ga0207701_100243026	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MAQRRSNEISVLEARHKIFNQLCIAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVRGELIVEMFERKGERYIRLGETAKYNCSD
Ga0207709_107155481	3300025935	Miscanthus Rhizosphere	MAQRRSNEISVLEARHKIFNQLCIAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERNGERYIRLGETAKYNCSD
Ga0207669_105929631	3300025937	Miscanthus Rhizosphere	MAQRRSNEISVLEARHKIFNQLCIAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFVDVNGEFIVEMFERNGERYIRLGETAKYNCSD
Ga0207704_111048461	3300025938	Miscanthus Rhizosphere	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPNFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD
Ga0207712_109145911	3300025961	Switchgrass Rhizosphere	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETAKYNCSD
Ga0209481_101866822	3300027880	Populus Rhizosphere	MGQSRSTEIPVLEARHKIFNRLCSAYRRAGQDPDFGLRGYDVMVELAIPRNVFAEALDGFADARGELIVVMFERDGERYIRLGETAKYNCSD
Ga0207428_100868091	3300027907	Populus Rhizosphere	MAQRTRSIDISVREARHKVYNELCTAYRRSGQDADFGLRADDVIGDLAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD
Ga0307469_101981503	3300031720	Hardwood Forest Soil	MAQRRSNEISVLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERNGERYIRLGETAKYNCSD
Ga0307469_104652021	3300031720	Hardwood Forest Soil	QRTRSIDISVREARHKIFNKLCSAYRRSGQDLDFGLRADDIIEELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGETSKYNCSD
Ga0307469_116838531	3300031720	Hardwood Forest Soil	SIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVRGELIVEMFERNGERYIRLGETAKYNCSD
Ga0307468_1000306471	3300031740	Hardwood Forest Soil	MAQRTRSIDISVREARHKIFNKLCSAYRRSGQDPDFGLRADDIIGELAIPRNVFAEALDGFADVKGELIVEMFERNGERYIRLGKHRSITAVIDTST
Ga0307468_1010849981	3300031740	Hardwood Forest Soil	MAQSRSTEISLLEARHKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFERNGERYIRLGETAKYNCSD
Ga0307471_1006707722	3300032180	Hardwood Forest Soil	VLEARHKIFNQLCTAYRRSAQDPDFGLRAYDVMVELAIPLSLFAEALDGFADVNGELIVEMFERNGERYIRLGETAKYNCSD
Ga0307472_1027847951	3300032205	Hardwood Forest Soil	MAQSRSTEISLLEARHKIFNKLCSAYRRAGQDANFGLLAYDVMVELAIPRNVFAEALDGFADVRGELIVEMFERNGERYIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092332

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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