Metagenome / Metatranscriptome Family F092315

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092315
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	83 residues
Representative Sequence	MAKTSCRYQLRPKAGTQYHLCPEKDVETALELAAIKIPNPKSTIHIPGRAYTFSPGEEITPEKEKILLDFLTYCGEFELVKVPV
Number of Associated Samples	62
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	74.77 %
% of genes near scaffold ends (potentially truncated)	26.17 %
% of genes from short scaffolds (< 2000 bps)	85.05 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.402 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (25.234 % of family members)
Environment Ontology (ENVO)	Unclassified (30.841 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (32.710 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.43% β-sheet: 16.96% Coil/Unstructured: 61.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01790	LGT	7.48
PF03401	TctC	3.74
PF13180	PDZ_2	3.74
PF02653	BPD_transp_2	2.80
PF14384	BrnA_antitoxin	1.87
PF03960	ArsC	1.87
PF14306	PUA_2	0.93
PF00717	Peptidase_S24	0.93
PF01914	MarC	0.93
PF02746	MR_MLE_N	0.93
PF13098	Thioredoxin_2	0.93
PF13370	Fer4_13	0.93
PF08240	ADH_N	0.93
PF07883	Cupin_2	0.93
PF16561	AMPK1_CBM	0.93
PF01070	FMN_dh	0.93
PF00216	Bac_DNA_binding	0.93
PF13607	Succ_CoA_lig	0.93
PF08299	Bac_DnaA_C	0.93
PF00378	ECH_1	0.93
PF01522	Polysacc_deac_1	0.93
PF00850	Hist_deacetyl	0.93
PF05239	PRC	0.93
PF04358	DsrC	0.93
PF04199	Cyclase	0.93
PF00873	ACR_tran	0.93
PF00364	Biotin_lipoyl	0.93
PF04365	BrnT_toxin	0.93
PF00989	PAS	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	7.48
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.74
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.87
COG1393	Arsenate reductase or related protein, glutaredoxin family	Inorganic ion transport and metabolism [P]	1.87
COG4948	L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	Cell wall/membrane/envelope biogenesis [M]	1.87
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.93
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	0.93
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.93
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.93
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.93
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.93
COG2920	Sulfur transfer complex TusBCD TusE component, DsrC family (tRNA 2-thiouridine synthesizing protein C)	Translation, ribosomal structure and biogenesis [J]	0.93
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
All Organisms	root	All Organisms	48.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
cellular organisms	root	All Organisms → cellular organisms	48.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.76 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	14.02 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.80 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.93 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	14.02 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.87 %
unclassified Zetaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria	0.93 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.93 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.74 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	3.74 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.93 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.93 %
unclassified Clostridia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia	0.93 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.87 %
unclassified Syntrophobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → unclassified Syntrophobacterales	1.87 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1.87 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	0.93 %
Deltaproteobacteria bacterium RBG_19FT_COMBO_52_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_19FT_COMBO_52_11	0.93 %
Deltaproteobacteria bacterium SM23_61	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium SM23_61	0.93 %
Peptococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae	0.93 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.93 %
Thermoactinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	0.93 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Syntrophobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → unclassified Syntrophobacterales → Syntrophobacterales bacterium	1.87 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.87 %
Desulfotomaculum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfotomaculum	0.93 %
unclassified Syntrophaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae	0.93 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	0.93 %
Deltaproteobacteria bacterium RBG_19FT_COMBO_52_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_19FT_COMBO_52_11	0.93 %
Deltaproteobacteria bacterium SM23_61	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium SM23_61	0.93 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.93 %
Thermoactinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	0.93 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.40 %
Syntrophobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → unclassified Syntrophobacterales → Syntrophobacterales bacterium	1.87 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.87 %
Syntrophaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium	0.93 %
Desulfotomaculum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfotomaculum	0.93 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	0.93 %
Deltaproteobacteria bacterium RBG_19FT_COMBO_52_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_19FT_COMBO_52_11	0.93 %
Deltaproteobacteria bacterium SM23_61	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium SM23_61	0.93 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.93 %
Thermoactinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	0.93 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_101137993	Not Available	835	Open in IMG/M
3300003852\|Ga0031655_10051450	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1803	Open in IMG/M
3300006224\|Ga0079037_100010541	All Organisms → cellular organisms → Bacteria	5988	Open in IMG/M
3300006224\|Ga0079037_100222237	All Organisms → cellular organisms → Bacteria → Proteobacteria	1710	Open in IMG/M
3300006224\|Ga0079037_101271526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → unclassified Syntrophobacterales → Syntrophobacterales bacterium	732	Open in IMG/M
3300006224\|Ga0079037_101495907	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300006224\|Ga0079037_101814439	Not Available	609	Open in IMG/M
3300009087\|Ga0105107_10795656	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300009091\|Ga0102851_10024275	All Organisms → cellular organisms → Bacteria → Proteobacteria	4521	Open in IMG/M
3300009091\|Ga0102851_11217527	Not Available	829	Open in IMG/M
3300009091\|Ga0102851_11257432	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → unclassified Syntrophobacterales → Syntrophobacterales bacterium	817	Open in IMG/M
3300009091\|Ga0102851_11258363	Not Available	816	Open in IMG/M
3300009111\|Ga0115026_10387785	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300009111\|Ga0115026_10892998	Not Available	702	Open in IMG/M
3300009157\|Ga0105092_10473231	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	717	Open in IMG/M
3300009167\|Ga0113563_11873362	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	714	Open in IMG/M
3300009167\|Ga0113563_12288295	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	650	Open in IMG/M
3300009167\|Ga0113563_13254481	Not Available	550	Open in IMG/M
3300009548\|Ga0116107_1168941	Not Available	592	Open in IMG/M
3300012931\|Ga0153915_10085544	All Organisms → cellular organisms → Bacteria	3315	Open in IMG/M
3300012931\|Ga0153915_10422896	Not Available	1512	Open in IMG/M
3300012931\|Ga0153915_10757562	Not Available	1124	Open in IMG/M
3300012931\|Ga0153915_10807818	Not Available	1087	Open in IMG/M
3300012931\|Ga0153915_12076143	Not Available	665	Open in IMG/M
3300012931\|Ga0153915_13355676	Not Available	519	Open in IMG/M
3300012931\|Ga0153915_13475651	Not Available	510	Open in IMG/M
3300012964\|Ga0153916_10142485	All Organisms → cellular organisms → Bacteria	2329	Open in IMG/M
3300012964\|Ga0153916_10213699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1928	Open in IMG/M
3300012964\|Ga0153916_11210767	Not Available	834	Open in IMG/M
3300012964\|Ga0153916_11313259	Not Available	801	Open in IMG/M
3300012964\|Ga0153916_12851301	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	545	Open in IMG/M
3300014502\|Ga0182021_10388177	Not Available	1655	Open in IMG/M
3300014502\|Ga0182021_12283428	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_19FT_COMBO_52_11	651	Open in IMG/M
3300014638\|Ga0181536_10384356	Not Available	631	Open in IMG/M
3300017929\|Ga0187849_1010288	All Organisms → cellular organisms → Bacteria	6278	Open in IMG/M
3300017939\|Ga0187775_10169611	Not Available	791	Open in IMG/M
3300017944\|Ga0187786_10235145	Not Available	717	Open in IMG/M
3300017944\|Ga0187786_10619833	Not Available	510	Open in IMG/M
3300017959\|Ga0187779_10679679	Not Available	695	Open in IMG/M
3300017961\|Ga0187778_10098255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1817	Open in IMG/M
3300017961\|Ga0187778_10436856	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	862	Open in IMG/M
3300017961\|Ga0187778_10879177	Not Available	615	Open in IMG/M
3300017966\|Ga0187776_10202867	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300017966\|Ga0187776_10273574	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300017973\|Ga0187780_11307922	Not Available	533	Open in IMG/M
3300017974\|Ga0187777_10834766	Not Available	660	Open in IMG/M
3300018015\|Ga0187866_1106616	Not Available	1148	Open in IMG/M
3300018021\|Ga0187882_1072812	Not Available	1537	Open in IMG/M
3300018029\|Ga0187787_10004447	All Organisms → cellular organisms → Bacteria	3255	Open in IMG/M
3300018029\|Ga0187787_10305131	Not Available	599	Open in IMG/M
3300018032\|Ga0187788_10080139	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300018058\|Ga0187766_10276305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	1082	Open in IMG/M
3300018058\|Ga0187766_10406901	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300018064\|Ga0187773_10009100	All Organisms → cellular organisms → Bacteria	4109	Open in IMG/M
3300018086\|Ga0187769_10090466	Not Available	2187	Open in IMG/M
3300018088\|Ga0187771_10015376	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5623	Open in IMG/M
3300018088\|Ga0187771_10344452	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium	1253	Open in IMG/M
3300018088\|Ga0187771_10838303	Not Available	780	Open in IMG/M
3300018089\|Ga0187774_10006516	All Organisms → cellular organisms → Bacteria	4184	Open in IMG/M
3300018090\|Ga0187770_10005599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfotomaculum	7555	Open in IMG/M
3300018090\|Ga0187770_10284520	Not Available	1285	Open in IMG/M
3300019275\|Ga0187798_1103619	Not Available	577	Open in IMG/M
3300020814\|Ga0214088_1528131	Not Available	1121	Open in IMG/M
3300024056\|Ga0124853_1174977	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	2460	Open in IMG/M
3300024056\|Ga0124853_1337193	All Organisms → cellular organisms → Bacteria	2202	Open in IMG/M
3300026464\|Ga0256814_1015288	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300027680\|Ga0207826_1090048	Not Available	844	Open in IMG/M
3300027680\|Ga0207826_1201014	Not Available	537	Open in IMG/M
3300027703\|Ga0207862_1115500	Not Available	806	Open in IMG/M
3300027818\|Ga0209706_10377655	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300027877\|Ga0209293_10722687	Not Available	528	Open in IMG/M
3300027887\|Ga0208980_10630334	Not Available	610	Open in IMG/M
3300027896\|Ga0209777_10241254	All Organisms → cellular organisms → Bacteria	1427	Open in IMG/M
3300031862\|Ga0315280_10427416	Not Available	600	Open in IMG/M
3300031949\|Ga0214473_10122008	All Organisms → cellular organisms → Bacteria	3042	Open in IMG/M
3300031949\|Ga0214473_11131434	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	816	Open in IMG/M
3300032069\|Ga0315282_10020192	All Organisms → cellular organisms → Bacteria	9324	Open in IMG/M
3300032783\|Ga0335079_11039708	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300032829\|Ga0335070_11516233	Not Available	611	Open in IMG/M
3300032892\|Ga0335081_11612804	Not Available	712	Open in IMG/M
3300032892\|Ga0335081_12348040	Not Available	556	Open in IMG/M
3300033004\|Ga0335084_12008064	Not Available	563	Open in IMG/M
3300033408\|Ga0316605_10698156	Not Available	957	Open in IMG/M
3300033413\|Ga0316603_10281360	Not Available	1460	Open in IMG/M
3300033414\|Ga0316619_10957442	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300033414\|Ga0316619_11321351	Not Available	641	Open in IMG/M
3300033418\|Ga0316625_100871142	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300033419\|Ga0316601_101341267	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	719	Open in IMG/M
3300033433\|Ga0326726_10152534	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2108	Open in IMG/M
3300033433\|Ga0326726_11217157	Not Available	732	Open in IMG/M
3300033434\|Ga0316613_10735380	Not Available	676	Open in IMG/M
3300033480\|Ga0316620_10130900	Not Available	1972	Open in IMG/M
3300033480\|Ga0316620_10196300	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium SM23_61	1677	Open in IMG/M
3300033480\|Ga0316620_10436017	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300033480\|Ga0316620_10905933	Not Available	853	Open in IMG/M
3300033480\|Ga0316620_11229526	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300033482\|Ga0316627_100296110	Not Available	1325	Open in IMG/M
3300033485\|Ga0316626_11094930	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300033486\|Ga0316624_10531578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	1011	Open in IMG/M
3300033486\|Ga0316624_11800249	Not Available	567	Open in IMG/M
3300033487\|Ga0316630_10610668	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300033513\|Ga0316628_101239382	Not Available	993	Open in IMG/M
3300033513\|Ga0316628_101243800	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300033513\|Ga0316628_101535162	Not Available	887	Open in IMG/M
3300033513\|Ga0316628_102129343	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300033513\|Ga0316628_102842005	Not Available	636	Open in IMG/M
3300034090\|Ga0326723_0565532	Not Available	525	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.94%
Aquatic	Environmental → Aquatic	41.12%
Bioreactor	Engineered → Bioreactor	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.14%
Freshwater	Environmental → Aquatic → Freshwater	39.25%
Peat	Environmental → Terrestrial → Peat	2.80%
Marine	Environmental → Aquatic → Marine	1.87%
Anaerobic	Engineered → Bioreactor → Anaerobic	0.93%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	50.47%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	29.91%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.61%
Loam	Environmental → Terrestrial → Soil → Loam	2.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.80%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.87%
Lake	Environmental → Aquatic → Freshwater → Lake	1.87%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	1.87%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	48.60%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	25.23%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.80%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.87%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.87%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.87%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	25.23%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	22.43%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	13.08%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	11.21%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.80%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	2.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.80%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.80%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.87%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.87%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.93%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.93%
Granular Sludge	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009548	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020814	Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit	Engineered	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300026464	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 CS5	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027818	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1011379932	3300001213	Wetland	MPKELPRYQLRPKLGTPYHLCPEKDIETAFELAEINVPNPRSTAHVAGRTYTFYSASQITPEAEKILLDTLKYFGEFELIKVPG*
Ga0031655_100514502	3300003852	Freshwater Lake Sediment	MAKTPCRYQLRPKVGTQYHLCPEKDVETAIELAAIKIPNPRSTIHIPGRAYTFFSAEEITPEKEKILLDFLTYCGEFELVKVPV*
Ga0079037_1000105411	3300006224	Freshwater Wetlands	HELLSITSYLKVHPSPMTKTYHRYQLRPKAGTQYHLCPEKDVETALELAALKIENPKSTIYVPGRTYTFSQTEEIAADKEKALLDFLTYCGEIELVRVP*
Ga0079037_1002222371	3300006224	Freshwater Wetlands	MKTFHRYQLRPKAGTRYHLCPEKDVETALELAALKIGNPKSTVHVPGRTYTFSQTEEIPAEKEKALLEFLTYCGEFELVKLP*
Ga0079037_1012715262	3300006224	Freshwater Wetlands	MPKAVQRYQLRPKTGSQYHLCPEKDIETAFQLVGIKIPNPKSTVHVAGRTYTFSPDEEITPEQENIILDALRYCGEFELVKVLG*
Ga0079037_1014959071	3300006224	Freshwater Wetlands	CKAMTISRYQLRPKTGPQYHLCPPKDLETALELAGIVPNPKSTAHVAGRTYTFTPGEEITPEKEKILLDCLSYCGEFELIKIA*
Ga0079037_1018144392	3300006224	Freshwater Wetlands	MGKITCRYQLRPKNGTQYHLCPEKEVETALELAAIKIPNPKSTVYVAGRNYTFSPSEEIPLEQEKILLDCLTYCGEFELIKIPG*
Ga0105107_107956561	3300009087	Freshwater Sediment	MQKEHSRYQLRPKTGTQYHLCPEKDIETAFELAEIIIPNPRSTAHVAGRTFTFFPGKEITPEQAKTLLDALSYCGEFE
Ga0102851_100242756	3300009091	Freshwater Wetlands	MKTFHRYQLRPKAGTRYHLCPEKDVETALELAALKIGNPKSAVHFPGRTYTFSQTEEIPAEKEKALLEFLTYCGEFELVKLP*
Ga0102851_112175271	3300009091	Freshwater Wetlands	MIRTPCRYQLRPKTGTQYHLCPEKEVEAALDLAAIKIPHPQSTISVAGRAYTFFPDEAITSEKEKILLDFLTYCGEFELVKIPV*
Ga0102851_112574322	3300009091	Freshwater Wetlands	MPKAVQRYQLRPKTGSQYHLCPEKDIETAFQLAGIKIPNPKSTVHVAGRTYTFSPDEEITPEQENIILDALRYCGEFELVKVLG*
Ga0102851_112583631	3300009091	Freshwater Wetlands	MTKTFHRYQLRPKAGTQYHLCPEKDVETALELSDLKIENPKSTIYAPGRTYTFSQTEEIPAEKQKALLDFLTY
Ga0115026_103877852	3300009111	Wetland	MKTFHRYQLRPKAGTQYHLCPEKDVETALELAALKIENPKSTIYVPGRTYTFSQTEEIAADKEKALLDFLTYCGEFELGRVP*
Ga0115026_108929981	3300009111	Wetland	LKKEKGPIENIVWSWRSIPMKTFHRYQLRPKAGTRYHLCPEKDVETALELAALKIGNPKSTVHVPGRTYTFSQTEEIPAEKEKALLEFLTYCGEFELVKLP*
Ga0105092_104732312	3300009157	Freshwater Sediment	MQKEHSRYQLRPKAGTRYHLCPEKDIEAAFELAGIHVPNRKSTAYVAGRTFTFSPEVEITPETEKMLLDSLSYCGEFELIKTPG*
Ga0113563_118733621	3300009167	Freshwater Wetlands	MQMGKITCRYQLRPKIGTQYHLCPEQEVETALELAAIKIPNPKSTVYVTGRTYTFSPAEEIPPEQEKILLDCLTYCGEFELVKIPG*
Ga0113563_122882952	3300009167	Freshwater Wetlands	MQKEHVRYQLRPKTGTRYHLCPEKDIETALELAGIRVPNPKSTVHMAGRTYTFSPAEEISQEAENALLDSLAYCGEFELIKTPG*
Ga0113563_132544812	3300009167	Freshwater Wetlands	MSKTTCRYQLRPKTGTQYHLCPEKEVEAALDLAAIKIPNPKSTISVAGRTYTFFADKEITSEKEKILLDFLTYCGEFELIKI
Ga0116107_11689411	3300009548	Peatland	MDKPHYRYQLRPKAGTQYHLCPEKDVETALELAAIKIPNPKSTIHIPGRAYTFSPGEEINPEKGKILLDFLAYCGEFELVKVPV*
Ga0153915_100855445	3300012931	Freshwater Wetlands	MIKTPSRYQLRPKTGTQYHLCPEKEVEAALDLAAIKIPHPQSTISVVGRTYTFSPDEAITSEKEKILLDFLTYCGEFELVKIPA*
Ga0153915_104228961	3300012931	Freshwater Wetlands	MIKTPCRYQLRPKTGTQYHLCPEKEVETALDLASIKIPNPKSTVYVTGRNYTFSPAEEIPPEQEKILLDCLTYCGEFELVKIPG*
Ga0153915_107575624	3300012931	Freshwater Wetlands	MKAMAKISCRYQLRPKAGTQYHLCPEKDVETALELAEIKVPNSKSIVHVPGRAYTFSPGEEISPEKEKALLDCLNYCGEFELVRVQG*
Ga0153915_108078182	3300012931	Freshwater Wetlands	MPKGLCRYQLRPKAGSQYHLCPEKDIETALDLAEIPRPNPKSTVYVAGRTYTFSPDEEITPEKKKMLLDSLSYCGEFELIKVP*
Ga0153915_120761431	3300012931	Freshwater Wetlands	MPKALSRYQLRPKAGSQYHLCPEKDIETAFDLTEIPRPNPKSTVYVAGRTYTFSLDEEITPEKKKTLLD
Ga0153915_133556761	3300012931	Freshwater Wetlands	MIKTPCRYQLRPKTGTQYHLCPEKEVEAALDLAAIKIPRPQSTISVAGRTYTFSPDEAITSEKEKILLDFLTYCGEFELVKIPV*
Ga0153915_134756512	3300012931	Freshwater Wetlands	MIRTPCRYQLRPKTGTQYHLCPEKEVETALDLAAIKIPNPKSTFSVAGRTYTFSPDEEITSEKEKILLDFLTYCGEFELVKIPV*
Ga0153916_101424853	3300012964	Freshwater Wetlands	MIKTPCRYQLRPKTGTQYHLCPEKEVEAALDLAAIKIPNPKSTFSVAGRTYTFSSEAEITSEKEKILLDFLTYCGEFELVKIPV*
Ga0153916_102136992	3300012964	Freshwater Wetlands	MKPMAKNSCRYQLRPKTGTQYHLCPEKDVETALELAEIIVPNSKSVVHVPGRAYTFSPREEISPEKEKALLDSLNYCGEFELVRVQG*
Ga0153916_112107673	3300012964	Freshwater Wetlands	MMKTPCRYQLQPKTGIPYHLCPEKEVETALGLTAIRIPNPKSTISVAGRTYTFSPDEEISSEKEKILLDFLTYCGEFELIKLPV*
Ga0153916_113132591	3300012964	Freshwater Wetlands	MPKALSRYQLRPKAGSQYHLCPEKDIETALDLAEIPRPNPKSTVYVAGRTYTFSPDEEITPEKKKILLDSLSYCGEFELVKVP*
Ga0153916_128513011	3300012964	Freshwater Wetlands	RALSMPKELCRYQLRPKAGSRYHLCPEKDIETALDLAEISRPNPKSTVYVAGRTYTFSLDEEITPEKKEVLLDSLSYCGEFELVKVP*
Ga0182021_103881773	3300014502	Fen	MAKILYRYQLRPKTGTQYHLCPEKDVETALELAALKIPNPKATIYVAGRTYTFSQSEEIPEEKEKILLDFLTYCGEFELIRVM*
Ga0182021_122834282	3300014502	Fen	LRPKVGTRYHLCPEKDVETALELAAIKIPNPRSTIHIPGRAYTFFPGEEITPETEKILLDFLTYCGEFELVRVPV
Ga0181536_103843561	3300014638	Bog	MDKPHYRYQLRPKAGTQYHLCPEKDVETALELAAIKIPNPKSTIHIPGRAYTFSPGEEINPEKGKILLDF
Ga0187849_10102881	3300017929	Peatland	MDKPHYRYQLRPKAGTQYHLCPEKDVETALELAAIKIPNPKSTIHIPGRAYTFSPGEEINPEKGKILLDFLAYCGEFELVKVPV
Ga0187775_101696112	3300017939	Tropical Peatland	MSQVLWRYQLRPKVGTQYHLCPEKDVQTALELAGIRIPHPQSTAYVAGRTYTFSPGEEIAPEKIKALLDFLAYCGEFELIRVLG
Ga0187786_102351451	3300017944	Tropical Peatland	PKAGTQYHLCPEKDVETALELSAIKIDNPKSVVYTPGRAYTFSQIEEISAQKEKVLLEFLTYCGEFELVRIP
Ga0187786_106198331	3300017944	Tropical Peatland	MSQVLWRYQLRPKVGTQYHLCPEKDVEAALELAGIRIPHPQSTAYVPGRTYTFSPGEEITPEKIKALLDFLAYCGEFELIRVLG
Ga0187779_106796792	3300017959	Tropical Peatland	VSQVFYRYQLRPKVGTPYHLCPEKDVETALELAGIRIPHPQSTAHVAGRTYTFSPGEEIAPEKIKALLDFLAYCGEFELIRVLG
Ga0187778_100982552	3300017961	Tropical Peatland	MAKTPCRYQLRPKAGTQYHLCPEKDVETALELAAIKIPNPKSTIHIPGRAYTFSPGEEINPEKGKILLDFLAYCGEFELVKVPV
Ga0187778_104368562	3300017961	Tropical Peatland	MTKTSCRYQLRPKTGTQYHLCPEKDVEAALELAAIKIPNPRSTVYVAGRTYTFSPGEEIASEKEKILLDFLAYCGEFELVKISV
Ga0187778_108791771	3300017961	Tropical Peatland	MSQILCRYQLRPKAGTQYHLCPEKDVEAALELAGIRIPHPQSTAYVAGRTYTFSPGEEIAPEKIKALLDFLAY
Ga0187776_102028672	3300017966	Tropical Peatland	LRPKVGTQYHLCPEKDVEAALELAGIRIPNPRSTAHVSGRTYTFSAGEEISPEKIKALLDFLAYCGEFELIRVLG
Ga0187776_102735741	3300017966	Tropical Peatland	MIKTPCRYQLRPKTGTRYHLCPEKEVETALDLASIKVPNPKSTISVAGRTYTFSPDQEITPEKEKILLDFLTYCGEFELVRIPV
Ga0187780_113079221	3300017973	Tropical Peatland	MAKTPCRYQLRPKAGTQYHLCPEKDVETALELAAIKIPNPQSTIHIPGRAYTFSPGEEINPEKGKILLDFL
Ga0187777_108347661	3300017974	Tropical Peatland	MAKTSCRYQLRPKAGTQYHLCPEKDVETALELAAIKIPNPQSTIHIPGRAYTFSPGEEINPEKGKILLDFLAYCGEFELVKVPV
Ga0187866_11066161	3300018015	Peatland	MAKTPCRYQLRPKVGTQYHLCPEKDVETALELAAIKIPNPKSTIHIPGRAYTFSPGEEINPEKGKILLDFLAYCGEFELVKVPV
Ga0187882_10728121	3300018021	Peatland	KAGTQYHLCPEKDVETALELAAIKIPNPKSTIHIPGRAYTFSPGEEINPEKGKILLDFLAYCGEFELVKVPV
Ga0187787_100044473	3300018029	Tropical Peatland	MIKTPCRYQLRPKTGTQYHLCPEKEVETALDLASIKIPNPKSTITVAGRTYTFSPDQEITPEKEKILLDFLTYCGEFELVRIPV
Ga0187787_103051311	3300018029	Tropical Peatland	MPRELSRYQLRPKTGSQYHLCPEKDIETALDLAEIAIPNRKSTAYVSGRTFTFSPDQEITPEKKKVLLDSLSYCGEFELVKVP
Ga0187788_100801392	3300018032	Tropical Peatland	MIKTPCRYQLRPKTGTQYHLCPEKEVETALDLASIKIPNPKSTITVAGRTYTFSPDQEITPEKEKILLDFLTYCGEFELVKIPV
Ga0187766_102763052	3300018058	Tropical Peatland	KPMAKTPCRYQLRPKAGTQYHLCPEKDVETALELAAIKIPNPKSTIHIPGRAYTFSPGEEINPEKGKILLDFLAYCGEFELVKVPV
Ga0187766_104069012	3300018058	Tropical Peatland	MAKTSCRYQLRPKAGTQYHLCPEKDVETALELAAIKIPNPKSTIHIPGRAYTFSPGEEITPEKEKILLDFLTYCGEFELVKVPV
Ga0187773_100091003	3300018064	Tropical Peatland	MIKTPCRYQLRPKTGTQYHLCPEKEVETALDLASIKVPNPKSTISVAGRTYTFSPDQEITPEKGKILLDFLTYCGEFELVRIPV
Ga0187769_100904662	3300018086	Tropical Peatland	MSQVLWRYQLRPKVGTQYHLCPEKDVQTALELAGIRIPHPQSTAYVAGRTYTFSPGEEIAPEKIKALLDFLAYCGEFEVIRILG
Ga0187771_100153762	3300018088	Tropical Peatland	MTKTSCRYQLRPKTGTQYHLCPEKDVEAALELAAIKIPNPRSTVYVAGRTYTFSSGEEIASEREKILLDFLAYCGEFELVKISV
Ga0187771_103444522	3300018088	Tropical Peatland	MSQVLCRYQLRPKVGTQYHLCPEKDVEAALELAGIRIPHPQSTAYVAGRTYTFTPGEEIAPEKIKALLDFLAYCGEFELIRVLG
Ga0187771_108383031	3300018088	Tropical Peatland	MAKIFCRYQLRPKTGTQYHLCPEKDVETALELAAIKIPNPRSTIYVSGRTYTFSPGEEIPPEKERVLLDCLTYCGEFELVRVPG
Ga0187774_100065163	3300018089	Tropical Peatland	MIKTPCRYQLRPKTGTQYHLCPEKEVETALDLASIKVPNPKSTISVAGRTYTFSPDQEITPEKEKILLDFLTYCGEFELVKIPV
Ga0187770_100055998	3300018090	Tropical Peatland	CRYQLRPKTGTQYHLCPEKDVEAALELAAIKIPNPRSTVYVAGRTYTFSPGEEIASEKEKILLDFLAYCGEFELVKISV
Ga0187770_102845202	3300018090	Tropical Peatland	MSQVLCRYQLRPKVGTQYHLCPEKDVEAALELAGIRIPHPQSTAYVAGRTYTFTPGEEIAPEKIKALLDFLAYCGEFELIRILG
Ga0187798_11036191	3300019275	Peatland	LTEVRPMSQVLCRYQLRPKVGTQYHLCPEKDVEAALELAGIRIPHPQSTAYVAGRTYTFTPGEEIAPEKIKALLDFLAYCGEFELIRVLG
Ga0214088_15281312	3300020814	Granular Sludge	MATFLSRYQLRPKSGTQYHLCPQKDVETALELAAINVRNPASTVYIAGRTYTFCPGEDITPEKEKALLDSLTYCGEFELVKVP
Ga0124853_11749775	3300024056	Freshwater Wetlands	MPAERYRYQLRPKAGSRYHLCPEKDIETGLDLAEIPRPNPKSTVSVAGRTYTFSSDKEITLEKENVLLDSLGFCGEFELVKVP
Ga0124853_13371933	3300024056	Freshwater Wetlands	MKTFHRYQLRPKAGTRYHLCPEKDVETALELAALKIGNPKSTVHVPGRTYTFSQTEEIPAEKEKALLEF
Ga0256814_10152881	3300026464	Sediment	MIKTPCRYQLRPKTGTPYHLCPGKEVEAALDLAAIKIPHPQSTISVAGRTYTFSPDEAITSEKEKILLDFLTYCGEFELIKI
Ga0207826_10900481	3300027680	Tropical Forest Soil	LSWRVDSMAKILYRYQLRPKAGTQYHLCPEKDVETALELAALKIPNPKSTIYVAGKTYTFSQSEEIPAEKEKILLDFLTYCGEFELIRVM
Ga0207826_12010141	3300027680	Tropical Forest Soil	MSQVLCRYQLRPKAGTQYHLCPEKDVETALELAGIRIPNPQSTAYVTGRTYTFSPGQEIAPESERVLLECLAYCGEFELIRIPA
Ga0207862_11155002	3300027703	Tropical Forest Soil	MAKILYRYQLRPKAGTQYHLCPEKDVETALELAALKIPNPKSTIYVAGKTYTFSQSEEIPAEKEKILLDFLTYCGEFELIRVM
Ga0209706_103776551	3300027818	Freshwater Sediment	MQKEHSRYQLRPKTGTQYHLCPEKDIETAFELAEIIIPNPRSTAHVAGRTFTFFPGKEITPEQAKTLLDALSYCGEFEL
Ga0209293_107226871	3300027877	Wetland	MKTFHRYQLRPKAGTRYHLCPEKDVETALELAALKIGNPKSTVHVPGRTYTFSQTEEIPAEKEKALLEFLTYCGEFELVKLP
Ga0208980_106303341	3300027887	Wetland	YQLRPKAGTQYHLCPEKDVETALELAAIKIENPKSTIYSPGRTYTFSQTKEIPPEKEKALLEFLTYCGEFELVRLP
Ga0209777_102412542	3300027896	Freshwater Lake Sediment	MAKTPCRYQLRPKVGTQYHLCPEKDVETAIELAAIKIPNPRSTIHIPGRAYTFFSAEEITPEKEKILLDFLTYCGEFELVKVPV
Ga0315280_104274162	3300031862	Sediment	FKGEPEKKTEKPPTGRMKHMVNRHSRYQLRPKAGTQYHLCPEKDVETALELAAIKIPNAKSTVYVAGRTYTFSPDEEITPEQEKILLDSLTYCGEFELVRIP
Ga0214473_101220084	3300031949	Soil	MWLTTEPMQKEHSRYQLRPKTGTRYHLCPEKDIETALELAGIIIPNPRSTAHAAGRTFTFFPDKEITSEQAKTLLDALSYCGEFELVKIPG
Ga0214473_111314341	3300031949	Soil	MWLTTEPMQKEHSRYQLRPKTGTQYHLCPEKDIETAFELVGINIPNPRSTAHVAGRTFTFFPDREITPEQAKTLLDALSYCGEFELIKIPG
Ga0315282_100201928	3300032069	Sediment	MTKTFHRYQLRPKAGTQYHLCPEKDVKTALELADMKIENPKSTIYIPGRTYTFSQSEGLQAEKQKALLDFLTYCGEFELVKIP
Ga0335079_110397081	3300032783	Soil	MPKTHCRYQLRPKAGTQYHLCPEKDVETALELATIKIPNPKSTIHIPGRAYTFSLGEEITPEKEKILLDFLTYCGEFELVKVPV
Ga0335070_115162332	3300032829	Soil	MINPALNPISGRMKAMPQVLYRYQLRPKVGTQYHLCPEKDVEAALELAGIRIPHPQSTAHVAGRTYTFSPGEEIAPEKMKALLDFLTYCGEFELIRVLG
Ga0335081_116128041	3300032892	Soil	IVVISLTRGKTHMTKILCRYQLRPKTGTQYHLCPEKDVETALELAAIKTPNPRSTVYVAGRTYTFSPGEEITSEKEKILLEFLTYCGEFELVKIPV
Ga0335081_123480401	3300032892	Soil	MAKTHCRYQLRPKAGTQYHLCPEKDVETALELATIKIPNPKSTIHIPGRAYTFSPGEEISPEKEKILLDFLTYCGEFELVKVPV
Ga0335084_120080642	3300033004	Soil	MAKTSCRYQLHPKAGTQYHLCPEKEVEAALDLAAIRIPHPQSIVSVAGRTYTFSPDEAITSEKEKILLDFLTYCGEFELVKISG
Ga0316605_106981561	3300033408	Soil	MKTFHRYQLRPKAGTQYHLCPEKDVETALELAAIKIENPKSTIYSPGRTYTFSQTEAIPVEKEKALLEFLTYCGEFELVRLP
Ga0316603_102813601	3300033413	Soil	MTKTFHRYQLRPKAGTQYHLCPEKDVETALELSDLKIENPKSTIYAPGRTYTFSQSEEIPAEKQKALLDFLTYCGEFELVKIP
Ga0316619_109574421	3300033414	Soil	LSIAAKAGTQYHLCPEKDVETALELAALKIENPKSTIYVPGRTYTFSQTEEIAADKEKALLDFLTYCGEFELGRVP
Ga0316619_113213511	3300033414	Soil	MTISRYQLRPKTGPQYHLCPPKDLETALELAGIVPNPKSTAHVAGRTYTFTPGEEITPEKEKILLDCLSYCGEFELIKIA
Ga0316625_1008711422	3300033418	Soil	MTKTFHRYQLRPKAGTQYHLCPEKDVETALELAALKIENPKSTIYVPGRTYTFSQTEEIAADKEKALLDFLTYCGEFELGRVP
Ga0316601_1013412672	3300033419	Soil	MQKEHVRYQLRPKTGTRYHLCPEKDIETAFELAGIRVPNPKSTVHMAGRTYTFSPAEEISQEAENALLDSLAYCGEFELIKTPG
Ga0326726_101525342	3300033433	Peat Soil	MTKTFHRYQLRPKAGTQYHLCPEKDVETALELAALKIENPKSTIYAPGRTYTFSQSEEIPAEKEKALLDFLAYCGEFELVRIP
Ga0326726_112171572	3300033433	Peat Soil	MIKTPCRYQLRPKTGTQYHLCPEKEVETALDLASIKIPNPKSTISVAGRTYTFSPDQEITLEKEKILLDFLTYCGEFELVKILV
Ga0316613_107353801	3300033434	Soil	MKTFHRYQLRPKAGTRYHLCPEKDVETALELAALKIGNPKSAVHVPGRTYTFSQTEEIPAEKEKALLEFLTYCGEFELVKLP
Ga0316620_101309002	3300033480	Soil	MGKITCRYQLRPKIGTQYHLCPEQEVETALELAAIKIPNPKSTVYVTGRNYTFSPAEEIPLEQEKILLDCLNYCGEFELVKIPG
Ga0316620_101963002	3300033480	Soil	MMKTPCRYQLRPKTGTPYHLCPEKEVETALDLAAIRIPNPKSTISVAGRTYTFSPDEEISSEKEKISLDFLTYCGEFELIKLPV
Ga0316620_104360172	3300033480	Soil	MIRTPCRYQLRPKTGTQYHLCPEKEVEAALDLAAIKIPHPQSTISVAGRAYTFFPDEAITSEKEKILLDFLTYCGEFELVKIPV
Ga0316620_109059332	3300033480	Soil	MSKTACRYQLRPKTGTPYHLCPEKEVETALDLAGIRIPNPKSTVSVAGRTYTFFPEEEITSEKEKILLDFLTYCGEFELVRILV
Ga0316620_112295262	3300033480	Soil	MIKTPSRYQLRPKTGTQYHLCPEKEVEAALDLAAIKIPHPQSTISVVGRTYTFSPDEAITSEKEKILLDFLT
Ga0316627_1002961101	3300033482	Soil	PTAGTRYHLCPEKDVETALELAALKIGNPKSTVHVPGRTYTFSQTEEIPAEKEKALLEFLTYCGEFELVKLP
Ga0316626_110949302	3300033485	Soil	MTKTYHRYQLRPKAGTQYHLCPEKDVETALELAALKIENPKSTIYVPGRTYTFSQTEEIAADKEKALLDFLTYCGEIELVRVP
Ga0316624_105315783	3300033486	Soil	MITNHSRYQLRPKSGTAYHLCPSQDVETALELAAIKIPNPRSTTYVAGRTYTFFPSEEITAEKEKTLLESLSYCGEFELIRVP
Ga0316624_118002491	3300033486	Soil	MGKITCRYQLRPKIGTQYHLCPEQEVETALELAAIKIPNPKSTVYVPGRNYTFSPAEEIPLEQEKILLDCLTYCGEFELVKIPG
Ga0316630_106106683	3300033487	Soil	MKTFHRYQLRPKAGTRYHLCPEKDVETALELAALKIGNPKSAVHFPGRTYTFSQTEEIPAEKEKALLEFLTYCGEFELVKLP
Ga0316628_1012393822	3300033513	Soil	MSKTACRYQLRPKTGTPYHLCPEKEVETALDLAGIKIPNPKSTVSVAGRTYTFFPEEEITSEKEEILLDFLTYCGEFELVRIPV
Ga0316628_1012438002	3300033513	Soil	MIKTPSRYQLRPKTGTQYHLCPEKEVEAALDLAAIKIPHPQSTISVVGRTYTFSPDEAITSEKEKILLDFLTYCGEFELVKIPA
Ga0316628_1015351622	3300033513	Soil	MAPTHCRYQLRPKTGTEYHLCPPKDVETALELAAIKVLNPQSTAYVPGRSYTFSLGEEITPEKEKMLLDCLNYCGEFELVRVRV
Ga0316628_1021293431	3300033513	Soil	MIKTPCRYQLRPKTGTQYHLCPEKEVETALELASIKIPNPKSTISVAGRTYTFSSDQEITLEKEKILLDFLT
Ga0316628_1028420051	3300033513	Soil	KAGTQYHLCPEKDVETALELAEIKVPNSKSIVHVPGRAYTFSPGEEISPEKEKALLDCLNYCGEFELVRVQG
Ga0326723_0565532_266_523	3300034090	Peat Soil	MNPMTKTFHRYQLRPKAGTQYHLCPEKDVETALELAALKIENPKSTIYAPGRTYTFSQSEEIPAEKEKALLDFLAYCGEFELVRIP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092315

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences