Metagenome Family F092314

Basic Information
Family ID	F092314
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	59 residues
Representative Sequence	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTS
Number of Associated Samples	40
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	90.65 %
% of genes near scaffold ends (potentially truncated)	8.41 %
% of genes from short scaffolds (< 2000 bps)	66.36 %
Associated GOLD sequencing projects	38
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (85.047 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (71.028 % of family members)
Environment Ontology (ENVO)	Unclassified (79.439 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (74.766 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1JGI26437J51864_100018323 2Ga0069718_1003949214 3Ga0069718_120931652 4Ga0069718_154781661 5Ga0069718_156102353 6Ga0079037_1000336163 7Ga0079303_101346313 8Ga0105152_102154723 9Ga0115028_104227821 10Ga0114919_102837451 11Ga0114919_109967022 12Ga0153916_100113525 13Ga0153916_100179042 14Ga0153916_100443233 15Ga0153916_105823053 16Ga0163200_12599852 17Ga0172365_105066751 18Ga0172366_102258461 19Ga0172366_104840352 20Ga0172363_106957122 21Ga0194041_102651522 22Ga0208045_11293112 23Ga0209182_100175025 24Ga0209182_102328492 25Ga0209293_102876501 26Ga0209254_100604593 27Ga0209254_101518831 28Ga0209254_105585412 29Ga0209254_110173911 30Ga0209668_111728831 31Ga0315291_1001104314 32Ga0315291_100562685 33Ga0315291_104220503 34Ga0315291_105031613 35Ga0315291_108177931 36Ga0315291_111680392 37Ga0315293_100133358 38Ga0315293_100363863 39Ga0315293_100367924 40Ga0315293_101207112 41Ga0315293_101239714 42Ga0315293_101517933 43Ga0315293_107905113 44Ga0315293_110570691 45Ga0315288_100290959 46Ga0315288_104006853 47Ga0315288_106846373 48Ga0315288_107579702 49Ga0315288_113746273 50Ga0315288_113841632 51Ga0315280_101272193 52Ga0315297_100082988 53Ga0315285_1001558212 54Ga0315285_1003007610 55Ga0315285_101582893 56Ga0315285_101859753 57Ga0315285_105320711 58Ga0315285_106579843 59Ga0315285_108161543 60Ga0315294_100459495 61Ga0315294_101275483 62Ga0315294_103066644 63Ga0315294_104307743 64Ga0315278_100150775 65Ga0315274_101782385 66Ga0315274_103726743 67Ga0315274_110698793 68Ga0315274_119339733 69Ga0315296_1000175910 70Ga0315296_101044241 71Ga0315289_100972864 72Ga0315284_100229384 73Ga0315284_103600682 74Ga0315284_104918373 75Ga0315284_106151042 76Ga0315284_115256121 77Ga0315284_122475062 78Ga0315282_101743381 79Ga0315282_102067633 80Ga0315282_102353742 81Ga0315282_104474303 82Ga0315279_1002284210 83Ga0315279_100939651 84Ga0315279_101392322 85Ga0315279_102585813 86Ga0315295_100123175 87Ga0315295_100657323 88Ga0315295_102212751 89Ga0315295_112960561 90Ga0315295_116573362 91Ga0315281_103164802 92Ga0315281_104974591 93Ga0315281_107977882 94Ga0315283_107578773 95Ga0315283_107915083 96Ga0315287_101766395 97Ga0315287_107673333 98Ga0315287_113469651 99Ga0315287_113933881 100Ga0315287_119544761 101Ga0315273_1003641612 102Ga0315273_102154233 103Ga0316604_101200282 104Ga0316620_100025541 105Ga0316620_100073523 106Ga0316620_118026073 107Ga0299912_103349542
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1JGI26437J51864_100018323 2Ga0069718_1003949214 3Ga0069718_120931652 4Ga0079037_1000336163 5Ga0115028_104227821 6Ga0114919_102837451 7Ga0153916_100179042 8Ga0163200_12599852 9Ga0172363_106957122 10Ga0194041_102651522 11Ga0209182_100175025 12Ga0315293_101207112 13Ga0315288_104006853
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1Ga0209254_110173911 2JGI26437J51864_100018323 3Ga0069718_1003949214 4Ga0069718_120931652 5Ga0069718_156102353 6Ga0079303_101346313 7Ga0115028_104227821 8Ga0114919_102837451 9Ga0153916_100113525 10Ga0153916_100179042 11Ga0153916_105823053 12Ga0163200_12599852 13Ga0172366_102258461 14Ga0172363_106957122 15Ga0194041_102651522 16Ga0209182_100175025 17Ga0209182_102328492 18Ga0209293_102876501 19Ga0209254_101518831 20Ga0315291_100562685 21Ga0315293_100133358 22Ga0315293_100363863 23Ga0315285_1001558212 24Ga0315285_1003007610 25Ga0315285_108161543 26Ga0315294_100459495 27Ga0315274_110698793 28Ga0315284_103600682 29Ga0315284_106151042 30Ga0315284_122475062 31Ga0315295_100123175 32Ga0316620_118026073
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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.94% β-sheet: 27.59% Coil/Unstructured: 57.47%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF08291	Peptidase_M15_3	10.28
PF13385	Laminin_G_3	1.87
PF00535	Glycos_transf_2	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	14.95 %
Unclassified	root	N/A	85.05 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	14.02 %
Unclassified	root	N/A	85.05 %
Viruses	superkingdom	All Organisms → Viruses	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.02 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.93 %
Unclassified	root	N/A	85.05 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	8.41 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
Unclassified	root	N/A	85.05 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	8.41 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %
Unclassified	root	N/A	85.05 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.93 %

Name	Rank	Taxonomy	Distribution
candidate division TA06	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06	0.93 %
candidate division WOR-3	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	6.54 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
Unclassified	root	N/A	85.05 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
candidate division TA06 bacterium DG_78	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium DG_78	0.93 %
candidate division WOR-3	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	6.54 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Unclassified	root	N/A	85.05 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
candidate division TA06 bacterium DG_78	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium DG_78	0.93 %
candidate division WOR-3	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	6.54 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.93 %
Unclassified	root	N/A	85.05 %

Name	Rank	Taxonomy	Distribution
candidate division TA06 bacterium DG_78	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium DG_78	0.93 %
candidate division WOR-3	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	6.54 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Unclassified	root	N/A	85.05 %
unclassified Siphoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae	0.93 %

Name	Rank	Taxonomy	Distribution
candidate division TA06 bacterium DG_78	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium DG_78	0.93 %
candidate division WOR-3	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	6.54 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Synechococcus phage S-CBS4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	0.93 %
Unclassified	root	N/A	85.05 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300013127\|Ga0172365_10506675	Not Available	697	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10225846	Not Available	1189	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10484035	Not Available	744	Open in IMG/M
(restricted) 3300013130\|Ga0172363_10695712	Not Available	637	Open in IMG/M
3300003910\|JGI26437J51864_10001832	Not Available	4896	Open in IMG/M
3300004481\|Ga0069718_10039492	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	9054	Open in IMG/M
3300004481\|Ga0069718_12093165	Not Available	555	Open in IMG/M
3300004481\|Ga0069718_15478166	Not Available	662	Open in IMG/M
3300004481\|Ga0069718_15610235	All Organisms → cellular organisms → Bacteria	2721	Open in IMG/M
3300006224\|Ga0079037_100033616	Not Available	3826	Open in IMG/M

Showing 1 to 10 of 107 entries

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	94.39%
Terrestrial	Environmental → Terrestrial	5.61%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.93%
Freshwater	Environmental → Aquatic → Freshwater	92.52%
Marine	Environmental → Aquatic → Marine	1.87%
Soil	Environmental → Terrestrial → Soil	4.67%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	76.64%
Lentic	Environmental → Aquatic → Freshwater → Lentic	5.61%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.74%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	73.83%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	5.61%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.80%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.93%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.87%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.93%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.87%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	5.61%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	3.74%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.93%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	2.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	71.03%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	3.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.87%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003910	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300009039	Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013088	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_200m	Environmental	Open in IMG/M
3300013127 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26437J51864_100018323	3300003910	Freshwater Lake Sediment	MLQKILNWILARTTFKLYTSATPLGRRLGGHDIPGVTDSYIILELSISGIIAFTGHFQTA
Ga0069718_1003949214	3300004481	Sediment	LSTILNWILKRVTFRLYNSSTPIGRRLGGHDIPGVTDSYIILELELAGVTAFTGHFQAS*
Ga0069718_120931652	3300004481	Sediment	VSAILNWILRRVTFRLYNSNVAQGRRLGGHDIPGVDDSYIILELVLADVIVFCGYFQTS*
Ga0069718_154781661	3300004481	Sediment	LSTILNWILKRVTFRLYNSSTPIGRRLGGHNIPDVVDSYIILELVIAGVTAFSGYFQAT*
Ga0069718_156102353	3300004481	Sediment	LSTILNWILKRVTFRLYNSSTPIGRRLGGHNIPDIVDSYIILELVLAGVTAFTGYFQTS*
Ga0079037_1000336163	3300006224	Freshwater Wetlands	MSALIRKIFNWIIARATFKLYNSSTPIGRRLGGHNIPDVLDQYIILEIGLTGVLTFTGYFQTS*
Ga0079303_101346313	3300006930	Deep Subsurface	MAWILNWILKRVTFKLYNSSTPIGKRLGGHDIPDVVDSYIILELVIVGVSAFSGYFQSS*
Ga0105152_102154723	3300009039	Lake Sediment	MSWLLNWLLKRVTFRLYNSSSPIGRRLGGHDIPGVTDSYIILELTLSGVLAFTGYFQTS*
Ga0115028_104227821	3300009179	Wetland	MIWRWILNWVLSHVTFKLYNSDRPAGRRLGGHDIPNVIDAYIILEMGISGVSSFVGYFQTA*
Ga0114919_102837451	3300009529	Deep Subsurface	MSTILNWILKRVTFRLYNSNSPIGRRLGGHDIPNVIDTYIILELSVSSAIAFSG
Ga0114919_109967022	3300009529	Deep Subsurface	LSTILNWILKRVTFRLYNSSTPIGRRLGGHDIPNVTDSYIILELVLAGVTAFTGYFQTS*
Ga0153916_100113525	3300012964	Freshwater Wetlands	MAWLLNWILKRVTFRLYNSSTPIGRRLGGHDIPDVVDSYIILELTIAGVTAFTGYFQTS*
Ga0153916_100179042	3300012964	Freshwater Wetlands	MAWLLNWILKRVTFKLYNSSTPLGRRLGGHNIPDVIDSYIIIELVISGVTAFTGYFQTS*
Ga0153916_100443233	3300012964	Freshwater Wetlands	MIWRWILNWVLSHVTFKLYNSDRPAGRRLGGHDIPNVIDAYIILEMGISGVSSFVGYFQTS*
Ga0153916_105823053	3300012964	Freshwater Wetlands	MAWLLNWLLKRATFKLYNSSTPLGTRLGGHDIPNVTDSYIILELEIGHVSAFTGHFQTS*
Ga0163200_12599852	3300013088	Freshwater	MSWILNWVLKRVSFKLYNSSTPIGKRLGGHNIPNVLDSYIILEMGIAGISAFIGYFQTS*
(restricted) Ga0172365_105066751	3300013127	Sediment	VSAILNWILKRVTFRLYNSSTPLGRRLGGHDIPGVTDSFIILELQLQDVAVFVGHFQTS*
(restricted) Ga0172366_102258461	3300013128	Sediment	VSVILNWILKRVSFRLYNSSSPLGRRLGGHDIPGVTDSFIIIELQLQDVAVFVGHFQTS*
(restricted) Ga0172366_104840352	3300013128	Sediment	VSVILNWILKRVTFKLYNSNLAQGRRLGGHDIPGVDDSFIILELVLADVIVFCGYFQTS*
(restricted) Ga0172363_106957122	3300013130	Sediment	LTWLLNWILKRATLKIYASSTPIGRRLGGHDLPHVVDSYIILEIGLHGVLTFSGYFQTS*
Ga0194041_102651522	3300021340	Anoxic Zone Freshwater	MSWLLNWILKRVTFNLFNSSTPIGSRLGGHDIPNVVDSYIILQLSLSSVISFTGYFQTT
Ga0208045_11293112	3300025306	Freshwater	MSWILNWVLKRVSFKLYNSSTPIGKRLGGHNIPNVLDSYIILEMGIAGISAFIGYFQTS
Ga0209182_100175025	3300025843	Lake Sediment	MLWRLLLNWIVNHVTFKLYNSNRPIGRRLGGHDIPGVADAYIILELWVEGVISFSGYFQT
Ga0209182_102328492	3300025843	Lake Sediment	MSWLLNWLLKRVTFRLYNSSSPIGRRLGGHDIPGVTDSYIILELTLSGVLAFTGYFQTS
Ga0209293_102876501	3300027877	Wetland	MSALIRKIFNWIIARATFKLYNSSTPIGRRLGGHNIPDVLDQYIILEIGLTGVLTFTGYFQTS
Ga0209254_100604593	3300027897	Freshwater Lake Sediment	MAWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTS
Ga0209254_101518831	3300027897	Freshwater Lake Sediment	MSALIRKFFNWIIARATFRLYNSSTPIGRRLGGHDIPNVLDQYIILEIGIAGVLSFTGYFQTS
Ga0209254_105585412	3300027897	Freshwater Lake Sediment	MSWILNWLLKRVTFRLYNSSTPIGKRLGGHDIPRVIDSYIILELVIAGVSAFTGYFQTS
Ga0209254_110173911	3300027897	Freshwater Lake Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTS
Ga0209668_111728831	3300027899	Freshwater Lake Sediment	LAALIRKVFNWIIARANFRLYNSSTPIGRRLGGHDIPNVLDQYIILEIGIRDVLTFTGYFQTS
Ga0315291_1001104314	3300031707	Sediment	MNWILNWLLKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTS
Ga0315291_100562685	3300031707	Sediment	MLQKILNWILARCTFKLYSSGFPEGRRLGGHDIPGITDSYVIIELSLSGLIAFVGYFQSA
Ga0315291_104220503	3300031707	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDNYIILELVIAGVSAYTGYFQTT
Ga0315291_105031613	3300031707	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDNYIIIELIIAGASAFTGYFQTT
Ga0315291_108177931	3300031707	Sediment	MSWILNWILKRVTFRLFNSSTPIGKRLGGHDIPNVIDNYIILELIIAGVSAFTGYFQTT
Ga0315291_111680392	3300031707	Sediment	MSWILNWIMKRVTFSLFNSATPIGKRLGGHDIPNVIDSYIILELIIGGASAFTGYFQTT
Ga0315293_100133358	3300031746	Sediment	MLWLLNWLLKRVTFHLYNSSTPIGKRLGGHDIPNVIDSYIILEVMMSGVSAFHGYFQTS
Ga0315293_100363863	3300031746	Sediment	MSWLLNWLLNRVSFKLYNSSTPIGKRLGGHDIPHVVDSYIILEMTIAGVTAFTGYFQTS
Ga0315293_100367924	3300031746	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDNYIILELVIAGVSAFTGYFQTS
Ga0315293_101207112	3300031746	Sediment	MWKVLLNWLLAHATLKLYNSDRPAGRRLGGHDIPGVTDAYIILEIALSGVISFTGYFQTS
Ga0315293_101239714	3300031746	Sediment	MLQKILNWILARCTFKLYSSGFPEGRRLGGHDIPGITDSYIILELSLSGLIAFVGHFQTA
Ga0315293_101517933	3300031746	Sediment	MSWILNWILKRVTFKLYNSSTPIGKRLGGHDIPAVIDSYIILELVIAGVSIFSGYFQTS
Ga0315293_107905113	3300031746	Sediment	VSWLLNWLLKRVSFKLYNSSTPIGKRLGGHDIPHVVDSYIILEMTIAGVTAFTGYFQTS
Ga0315293_110570691	3300031746	Sediment	MSWVLNWILKRVTFKLYNSSSPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTS
Ga0315288_100290959	3300031772	Sediment	MFWRLLLNWLVNHASFKLYNSDRPLGRRLGGHDIPGVLDAYIVLEMDIEGVTSFTGYFQT
Ga0315288_104006853	3300031772	Sediment	MSWILNWMLKRATFRLYNNNSPIGKRLGGHDIPNVIDSYIILELVIAGFTAFTGYFQTT
Ga0315288_106846373	3300031772	Sediment	MAWILNWILKRVTFKLYNSSSPIGKRLGGHDIPNVINSYIILELVIAGVSAFTGYFQTS
Ga0315288_107579702	3300031772	Sediment	MSWILNWILKRVTFKLYNSSSPIGKRLGGHDIPNVTDCYIILELVIAGVSAFTGYFQTS
Ga0315288_113746273	3300031772	Sediment	MSWILNWILKRATFRLHNSNTPIGKRLGGHDIPNVIDSYIILELVIAGFTAFTGYFQTT
Ga0315288_113841632	3300031772	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDNYIILELVIAGASAFIGYFQTS
Ga0315280_101272193	3300031862	Sediment	MNWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFT
Ga0315297_100082988	3300031873	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILEMTIAGVTAFTGYFQTS
Ga0315285_1001558212	3300031885	Sediment	MFWRLLLNWLVNHVDFKLYNSVSPIGRRLGGPDILSVTDAYIILEFWVEGVIRFTGYFQT
Ga0315285_1003007610	3300031885	Sediment	MFWRLLLNWLVNHASFKLYNSDRPLGRRLGGHDIPGVLDAYIVLEMGIEGVTSFIGYFQT
Ga0315285_101582893	3300031885	Sediment	MSWILNWILKRVTFKLYNSSSPIGKRLGGHDIPNVIDSYIILELVIAGVSAYTGYFQTS
Ga0315285_101859753	3300031885	Sediment	MSWILNWILKRVTFKLYNSSSPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTS
Ga0315285_105320711	3300031885	Sediment	MSWILNWILKRATFRLYNNNSPIGKRLGGHNIPNVIDSYIILELVIAGFTAFTG
Ga0315285_106579843	3300031885	Sediment	MSWILNWILKRATFRLYNSNTPIGKRLGGHDIPNVIDSYIIIELIIAGVSAFTGYFQTT
Ga0315285_108161543	3300031885	Sediment	MSWILNWILKRVTFSLFNSSTPIGKRLGGHDIPNVIDNYIIIELIIAGASAFTGYFQTT
Ga0315294_100459495	3300031952	Sediment	MLQKILNWILARTTFKLYNSDRPAGRRLGGHDIPGVTDAYIILDLALSGVIVFTGYFQTS
Ga0315294_101275483	3300031952	Sediment	MSSILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTS
Ga0315294_103066644	3300031952	Sediment	MSWILNWILKRVTFKLYNSSTPIGKRLGGHDIPAVIDSYIILELVIAGVSAFSGYFQTS
Ga0315294_104307743	3300031952	Sediment	MSWILNWILKRVTFRLYNSSTPVGKRLGGHDIPNVIDSYIILELVIAGVSAFIGYFQTS
Ga0315278_100150775	3300031997	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDNYIIIELIIDGASAFTGYFQTT
Ga0315274_101782385	3300031999	Sediment	MSWILNWILKRVTFKLYNSSSPIGKRLGGHDIPNVTDSYIILELVIAGVSAFTGYFQTS
Ga0315274_103726743	3300031999	Sediment	MLQKLLNWILARTTFKLYNSDRPAGRRLGGHDIPGVTDAYIILDLALSGVIAFTGYFQTS
Ga0315274_110698793	3300031999	Sediment	MSWILNWILKRATFRLYNNNSPIGKRLGGHNIPNVIDSYIILELVIAGFTAFTGYFQTT
Ga0315274_119339733	3300031999	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTT
Ga0315296_1000175910	3300032020	Sediment	MFWRLLLNWLVNHVTFKLYNSDRPLGRRLGGHDIPGVLDAYIVLEMGIEGVTSFTGYFQT
Ga0315296_101044241	3300032020	Sediment	MSWILNWILKRVTFRLYNSSTPIGKSLGGHDIPKVIDSYIILELVIAGVSAFTGYFQTS
Ga0315289_100972864	3300032046	Sediment	MSWILNWILKRATFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFIGYFQTS
Ga0315284_100229384	3300032053	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFSGYFQTS
Ga0315284_103600682	3300032053	Sediment	MWKVLLNWLLAHATLKLYNSDRPAGRRLGGHDIPGVTDAYIILDIALSGVISFTGYFQTA
Ga0315284_104918373	3300032053	Sediment	MSWILNWILKRVTFKLYNSSSPFGKRLGGHDIPNVIDNYIILELVIAGVSAFTGYFQTS
Ga0315284_106151042	3300032053	Sediment	MAWILNWILKRATFKLYNSSTPLGRRLGGHDIPAVIDSYIILELVIAGVSAFTGYFQAS
Ga0315284_115256121	3300032053	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDNYIILELVIAGVSAFTGYF
Ga0315284_122475062	3300032053	Sediment	MLKKILNWILARTTFKLYNSSTPLGRRLGGHDIPGVTDSYIILELSLSGLIAFVGYFQTA
Ga0315282_101743381	3300032069	Sediment	MSWILNWILKRVTFRLFNSSTPIGKRLGGHDIPNVIDNYIILELVIAGVSAFTGYFQTT
Ga0315282_102067633	3300032069	Sediment	MSWILNWILKRVTFKLYSSNSPIGKRLGGHDIPNVIDSYIILELVIDGVSAFTGYFQTS
Ga0315282_102353742	3300032069	Sediment	MSWILNWILKRVTFRLFNSSTPIGKRLGGHDIPNVIDNYIILELIIAGVSAFTGYFQTS
Ga0315282_104474303	3300032069	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDNYIIIELIIAGTSAFTGYFQTT
Ga0315279_1002284210	3300032070	Sediment	MSWILNWILKRVTFSLFNSSTPIGKRLGGHDIPNVIESYIIIELIIDGVSAFTGYFQTS
Ga0315279_100939651	3300032070	Sediment	MSWILNWLLKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTS
Ga0315279_101392322	3300032070	Sediment	MSWILYWILKRVTFKLYNSSTPIGKRLGGHDIPAVIDSYIILELVIAGVSAFSGYFQTS
Ga0315279_102585813	3300032070	Sediment	MSWILNWILKRVTFKLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTS
Ga0315295_100123175	3300032156	Sediment	MLQKILNWILARTTFMLYTSCMPLGRRLGGHDIPGVTDSYIILELALSGIIAFVGHFQTA
Ga0315295_100657323	3300032156	Sediment	MLQKILNWILTRTTFKLYNSSTPLGRRLGGHDIPGVTDSYIILELALSGIIAFVGHFQTA
Ga0315295_102212751	3300032156	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDNYIIIELIIAGASAFTGYFQTS
Ga0315295_112960561	3300032156	Sediment	GGSMSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTT
Ga0315295_116573362	3300032156	Sediment	MAWILNWILKRVTFKLYNSSTPIGKRLGGHDIPDVVDSYIILELVIAGVSAFTGYFQTS
Ga0315281_103164802	3300032163	Sediment	MNWILNWLLKRVTFRLYNSSTPIGKRLGGHDIPNVTDSYIILELVIAGVSAFTGYFQTS
Ga0315281_104974591	3300032163	Sediment	MNWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTS
Ga0315281_107977882	3300032163	Sediment	MSWILNWILKRATFRLHNSNTPIGKRLGGHNIPNVIDSYIILELVIAGFTAFTGYFQTT
Ga0315283_107578773	3300032164	Sediment	MSWILNWILKRVTFRLYNSSTPFGKRLGGHDLPNVIDNYIILELVIDGVSAFTGYFQTT
Ga0315283_107915083	3300032164	Sediment	MSWILNWILKRVTFRLYNSSTPIGKSLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTT
Ga0315287_101766395	3300032397	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDNYIIIELIIAGASAFTGYFQ
Ga0315287_107673333	3300032397	Sediment	MSWILNWILKRATFRLYNNNSPIGKRLGGHDIPNVIDSYIILELVIAGFTAFTGYFQTT
Ga0315287_113469651	3300032397	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQ
Ga0315287_113933881	3300032397	Sediment	LLNWLLAHATLKLYNSDRPAGRRLGGHDIPGVTDAYIILDIALSGVISFTGYFQTA
Ga0315287_119544761	3300032397	Sediment	MSWILNWILKRVTFRLYNSSTPIGKRLGGHDIPNVIDSYIILELVIAGVSAFSGY
Ga0315273_1003641612	3300032516	Sediment	MSWILNWILKRVTFKLYNSSSPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQSS
Ga0315273_102154233	3300032516	Sediment	MSWILNWILKRVTFKLYNSSTPIGKRLGGHDIPNVIDNYIIIELIIAGASAFTGYFQTT
Ga0316604_101200282	3300033406	Soil	MAWILNWILKRVTFKLYNSSTPIGKRLGGHDIPDVVDSYIILELVIVGVSAFSGYFQSS
Ga0316620_100025541	3300033480	Soil	MSAIIREFFNWIIARATFRLYNSSTPIGRRLAGHDIPNVLDQYIILEIGIRDVLTFTGYFQTS
Ga0316620_100073523	3300033480	Soil	MAWLLNWILKRVTFKLYNSSTPLGRRLGGHNIPDVIDSYIIIELVISGVTAFTGYFQTS
Ga0316620_118026073	3300033480	Soil	MAWLLNWILSKVTFKLYVSSQPLGRRLGGHNIPNVTDSYIILELDIKQVISFIGYFQTT
Ga0299912_103349542	3300033489	Soil	MAWILNWILKRVTFKLYNSATPIGKRLGGHDIPNVIDSYIILELVIAGVSAFTGYFQTS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters